ConsensusMap Member List

This is the complete list of members for ConsensusMap, including all inherited members.

addMetaValues(const MetaInfoInterface &from)	MetaInfoInterface
appendColumns(const ConsensusMap &rhs)	ConsensusMap
appendRows(const ConsensusMap &rhs)	ConsensusMap
applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true)	MapUtilities< ConsensusMap >	inline
applyFunctionOnPeptideHits(T &&f, bool include_unassigned=true) const	MapUtilities< ConsensusMap >	inline
applyFunctionOnPeptideHits_(std::vector< PeptideIdentification > &idvec, T &&f)	MapUtilities< ConsensusMap >	inlineprivate
applyFunctionOnPeptideHits_(const std::vector< PeptideIdentification > &idvec, T &&f) const	MapUtilities< ConsensusMap >	inlineprivate
applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true)	MapUtilities< ConsensusMap >	inline
applyFunctionOnPeptideIDs(T &&f, bool include_unassigned=true) const	MapUtilities< ConsensusMap >	inline
applyFunctionOnPeptideIDs_(std::vector< PeptideIdentification > &idvec, T &&f)	MapUtilities< ConsensusMap >	inlineprivate
applyFunctionOnPeptideIDs_(const std::vector< PeptideIdentification > &idvec, T &&f) const	MapUtilities< ConsensusMap >	inlineprivate
applyMemberFunction(Size(Type::*member_function)())	ConsensusMap	inline
applyMemberFunction(Size(Type::*member_function)() const) const	ConsensusMap	inline
assign(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
assignUnsafe(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
at(size_t i)	ExposedVector< ConsensusFeature >	inline
at(size_t i) const	ExposedVector< ConsensusFeature >	inline
back() noexcept	ExposedVector< ConsensusFeature >	inline
back() const noexcept	ExposedVector< ConsensusFeature >	inline
begin() noexcept	ExposedVector< ConsensusFeature >	inline
begin() const noexcept	ExposedVector< ConsensusFeature >	inline
cbegin() const noexcept	ExposedVector< ConsensusFeature >	inline
cend() const noexcept	ExposedVector< ConsensusFeature >	inline
clampTo(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
clampToUnsafe(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
clear(bool clear_meta_data=true)	ConsensusMap
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >::clear(const DIM_UNIT range)	RangeManager< RangeBases... >	inline
clearMetaInfo()	MetaInfoInterface
clearRanges()	RangeManager< RangeBases... >	inline
clearUniqueId()	UniqueIdInterface	inline
column_description_	ConsensusMap	protected
ColumnHeaders typedef	ConsensusMap
ConsensusMap()	ConsensusMap
ConsensusMap(const ConsensusMap &source)	ConsensusMap
ConsensusMap(ConsensusMap &&source)	ConsensusMap
ConsensusMap(size_type n)	ConsensusMap	explicit
const_iterator typedef	ExposedVector< ConsensusFeature >
const_reference typedef	ExposedVector< ConsensusFeature >
const_reverse_iterator typedef	ExposedVector< ConsensusFeature >
ConstIterator typedef	ConsensusMap
ConstReverseIterator typedef	ConsensusMap
containsAll(const RangeManager< RangeBasesOther... > &rhs) const	RangeManager< RangeBases... >	inline
createIfNotExists_()	MetaInfoInterface	inlineprotected
data_	ExposedVector< ConsensusFeature >	protected
data_processing_	ConsensusMap	protected
difference_type typedef	ExposedVector< ConsensusFeature >
DocumentIdentifier()	DocumentIdentifier
DocumentIdentifier(const DocumentIdentifier &)=default	DocumentIdentifier
DocumentIdentifier(DocumentIdentifier &&)=default	DocumentIdentifier
emplace_back(Args &&... args)	ExposedVector< ConsensusFeature >	inline
empty() const noexcept	ExposedVector< ConsensusFeature >	inline
end() noexcept	ExposedVector< ConsensusFeature >	inline
end() const noexcept	ExposedVector< ConsensusFeature >	inline
ensureUniqueId()	UniqueIdInterface
erase(const_iterator where) noexcept	ExposedVector< ConsensusFeature >	inline
erase(const_iterator from, const_iterator to) noexcept	ExposedVector< ConsensusFeature >	inline
experiment_type_	ConsensusMap	protected
ExposedVector()=default	ExposedVector< ConsensusFeature >
ExposedVector(const size_t n)	ExposedVector< ConsensusFeature >	inlineexplicit
ExposedVector(const size_t n, const ConsensusFeature &val)	ExposedVector< ConsensusFeature >	inline
ExposedVector(Iter begin, Iter end)	ExposedVector< ConsensusFeature >	inline
ExposedVector(const ExposedVector &rhs)=default	ExposedVector< ConsensusFeature >
ExposedVector(ExposedVector &&rhs) noexcept=default	ExposedVector< ConsensusFeature >
extend(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
extendUnsafe(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
FeatureType typedef	ConsensusMap
file_path_	DocumentIdentifier	protected
file_type_	DocumentIdentifier	protected
for_each_base_(Visitor &&visitor)	RangeManager< RangeBases... >	inlineprotected
for_each_base_(Visitor &&visitor) const	RangeManager< RangeBases... >	inlineprotected
getBase_() const	UniqueIdIndexer< ConsensusMap >	inlineprotected
getBase_()	UniqueIdIndexer< ConsensusMap >	inlineprotected
getColumnHeaders() const	ConsensusMap
getColumnHeaders()	ConsensusMap
getData() const	ExposedVector< ConsensusFeature >	inline
getData()	ExposedVector< ConsensusFeature >	inline
getDataProcessing() const	ConsensusMap
getDataProcessing()	ConsensusMap
getExperimentType() const	ConsensusMap
getIdentificationData() const	ConsensusMap
getIdentificationData()	ConsensusMap
getIdentifier() const	DocumentIdentifier
getKeys(std::vector< String > &keys) const	MetaInfoInterface
getKeys(std::vector< UInt > &keys) const	MetaInfoInterface
getLoadedFilePath() const	DocumentIdentifier
getLoadedFileType() const	DocumentIdentifier
getMetaValue(const String &name) const	MetaInfoInterface
getMetaValue(const String &name, const DataValue &default_value) const	MetaInfoInterface
getMetaValue(UInt index) const	MetaInfoInterface
getMetaValue(UInt index, const DataValue &default_value) const	MetaInfoInterface
getPrimaryMSRunPath(StringList &toFill) const	ConsensusMap
getProteinIdentifications() const	ConsensusMap
getProteinIdentifications()	ConsensusMap
getRange() const	RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >	inline
getRange()	RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >	inline
getRangeForDim(MSDim dim) const	RangeManager< RangeBases... >	inline
getRangeForDim(MSDim dim)	RangeManager< RangeBases... >	inline
getUnassignedIDMatches() const	ConsensusMap
getUnassignedPeptideIdentifications() const	ConsensusMap
getUnassignedPeptideIdentifications()	ConsensusMap
getUniqueId() const	UniqueIdInterface	inline
hasInvalidUniqueId() const	UniqueIdInterface	inline
hasRange() const	RangeManager< RangeBases... >	inline
hasValidUniqueId() const	UniqueIdInterface	inline
id_	DocumentIdentifier	protected
id_data_	ConsensusMap	protected
insert(const_iterator where, T from, T to)	ExposedVector< ConsensusFeature >	inline
INVALID enum value	UniqueIdInterface
isMapConsistent(Logger::LogStream *stream=nullptr) const	ConsensusMap
isMetaEmpty() const	MetaInfoInterface
isValid(UInt64 unique_id)	UniqueIdInterface	inlinestatic
iterator typedef	ExposedVector< ConsensusFeature >
Iterator typedef	ConsensusMap
meta_	MetaInfoInterface	protected
MetaInfoInterface()	MetaInfoInterface
MetaInfoInterface(const MetaInfoInterface &rhs)	MetaInfoInterface
MetaInfoInterface(MetaInfoInterface &&) noexcept	MetaInfoInterface
metaRegistry()	MetaInfoInterface	static
metaValueExists(const String &name) const	MetaInfoInterface
metaValueExists(UInt index) const	MetaInfoInterface
minSpanIfSingular(const double min_span)	RangeManager< RangeBases... >	inline
operator!=(const ConsensusMap &rhs) const	ConsensusMap
OpenMS::MetaInfoInterface::operator!=(const MetaInfoInterface &rhs) const	MetaInfoInterface
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >::operator!=(const RangeManager &rhs) const	RangeManager< RangeBases... >	inline
operator=(const ConsensusMap &source)	ConsensusMap
operator=(ConsensusMap &&source)=default	ConsensusMap
OpenMS::MetaInfoInterface::operator=(const MetaInfoInterface &rhs)	MetaInfoInterface
OpenMS::MetaInfoInterface::operator=(MetaInfoInterface &&) noexcept	MetaInfoInterface
OpenMS::DocumentIdentifier::operator=(const DocumentIdentifier &)=default	DocumentIdentifier
OpenMS::DocumentIdentifier::operator=(DocumentIdentifier &&) &=default	DocumentIdentifier
ExposedVector< ConsensusFeature >::operator=(const ExposedVector &rhs)=default	ExposedVector< ConsensusFeature >
ExposedVector< ConsensusFeature >::operator=(ExposedVector &&rhs) noexcept=default	ExposedVector< ConsensusFeature >
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface const &rhs)=default	UniqueIdInterface
OpenMS::UniqueIdInterface::operator=(UniqueIdInterface &&) &=default	UniqueIdInterface
operator==(const ConsensusMap &rhs) const	ConsensusMap
OpenMS::MetaInfoInterface::operator==(const MetaInfoInterface &rhs) const	MetaInfoInterface
RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >::operator==(const RangeManager &rhs) const	RangeManager< RangeBases... >	inline
OpenMS::DocumentIdentifier::operator==(const DocumentIdentifier &rhs) const	DocumentIdentifier
OpenMS::UniqueIdInterface::operator==(UniqueIdInterface const &rhs) const	UniqueIdInterface	inline
operator[](size_t i) noexcept	ExposedVector< ConsensusFeature >	inline
operator[](size_t i) const noexcept	ExposedVector< ConsensusFeature >	inline
pointer typedef	ExposedVector< ConsensusFeature >
pop_back() noexcept	ExposedVector< ConsensusFeature >	inline
printRange(std::ostream &out) const	RangeManager< RangeBases... >	inline
protein_identifications_	ConsensusMap	protected
push_back(const ConsensusFeature &f)	ExposedVector< ConsensusFeature >	inline
push_back(ConsensusFeature &&f)	ExposedVector< ConsensusFeature >	inline
pushInto(const RangeManager< RangeBasesOther... > &sandbox)	RangeManager< RangeBases... >	inline
pushIntoUnsafe(const RangeManager< RangeBasesOther... > &rhs)	RangeManager< RangeBases... >	inline
RangeManagerContainerType typedef	ConsensusMap
RangeManagerType typedef	ConsensusMap
reference typedef	ExposedVector< ConsensusFeature >
removeMetaValue(const String &name)	MetaInfoInterface
removeMetaValue(UInt index)	MetaInfoInterface
reserve(const size_t new_size)	ExposedVector< ConsensusFeature >	inline
resize(const size_t new_size)	ExposedVector< ConsensusFeature >	inline
resolveUniqueIdConflicts()	UniqueIdIndexer< ConsensusMap >	inline
reverse_iterator typedef	ExposedVector< ConsensusFeature >
ReverseIterator typedef	ConsensusMap
scaleBy(const double factor)	RangeManager< RangeBases... >	inline
setColumnHeaders(const ColumnHeaders &column_description)	ConsensusMap
setDataProcessing(const std::vector< DataProcessing > &processing_method)	ConsensusMap
setExperimentType(const String &experiment_type)	ConsensusMap
setIdentifier(const String &id)	DocumentIdentifier
setLoadedFilePath(const String &file_name)	DocumentIdentifier
setLoadedFileType(const String &file_name)	DocumentIdentifier
setMetaValue(const String &name, const DataValue &value)	MetaInfoInterface
setMetaValue(UInt index, const DataValue &value)	MetaInfoInterface
setPrimaryMSRunPath(const StringList &s)	ConsensusMap
setPrimaryMSRunPath(const StringList &s, MSExperiment &e)	ConsensusMap
setProteinIdentifications(const std::vector< ProteinIdentification > &protein_identifications)	ConsensusMap
setProteinIdentifications(std::vector< ProteinIdentification > &&protein_identifications)	ConsensusMap
setUnassignedPeptideIdentifications(const std::vector< PeptideIdentification > &unassigned_peptide_identifications)	ConsensusMap
setUniqueId()	UniqueIdInterface
setUniqueId(UInt64 rhs)	UniqueIdInterface	inline
setUniqueId(const String &rhs)	UniqueIdInterface
size() const noexcept	ExposedVector< ConsensusFeature >	inline
size_type typedef	ExposedVector< ConsensusFeature >
sortByIntensity(bool reverse=false)	ConsensusMap
sortByMaps()	ConsensusMap
sortByMZ()	ConsensusMap
sortByPosition()	ConsensusMap
sortByQuality(bool reverse=false)	ConsensusMap
sortByRT()	ConsensusMap
sortBySize()	ConsensusMap
sortPeptideIdentificationsByMapIndex()	ConsensusMap
split(SplitMeta mode=SplitMeta::DISCARD) const	ConsensusMap
SplitMeta enum name	ConsensusMap
static_for_each_base_(Visitor &&visitor)	RangeManager< RangeBases... >	inlineprotectedstatic
swap(ConsensusMap &from)	ConsensusMap
OpenMS::MetaInfoInterface::swap(MetaInfoInterface &rhs)	MetaInfoInterface
OpenMS::DocumentIdentifier::swap(DocumentIdentifier &from)	DocumentIdentifier
OpenMS::UniqueIdInterface::swap(UniqueIdInterface &from)	UniqueIdInterface	inline
UniqueIdIndexer< ConsensusMap >::swap(UniqueIdIndexer &rhs)	UniqueIdIndexer< ConsensusMap >	inline
ThisRangeType typedef	RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >
unassigned_peptide_identifications_	ConsensusMap	protected
unique_id_	UniqueIdInterface	protected
uniqueid_to_index_	UniqueIdIndexer< ConsensusMap >	mutableprotected
UniqueIdInterface()	UniqueIdInterface	inline
UniqueIdInterface(const UniqueIdInterface &rhs)=default	UniqueIdInterface
UniqueIdInterface(UniqueIdInterface &&rhs)=default	UniqueIdInterface
UniqueIdMap typedef	UniqueIdIndexer< ConsensusMap >
uniqueIdToIndex(UInt64 unique_id) const	UniqueIdIndexer< ConsensusMap >	inline
updateRanges() override	ConsensusMap	virtual
updateUniqueIdToIndex() const	UniqueIdIndexer< ConsensusMap >	inline
value_type typedef	ExposedVector< ConsensusFeature >
VecMember typedef	ExposedVector< ConsensusFeature >
~ConsensusMap() override	ConsensusMap
~DocumentIdentifier()	DocumentIdentifier	virtual
~MetaInfoInterface()	MetaInfoInterface
~RangeManagerContainer()=default	RangeManagerContainer< RangeRT, RangeMZ, RangeIntensity >	virtual
~UniqueIdInterface()=default	UniqueIdInterface	virtual