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FeatureFindingMetabo Member List

This is the complete list of members for FeatureFindingMetabo, including all inherited members.

charge_lower_bound_FeatureFindingMetaboprivate
charge_upper_bound_FeatureFindingMetaboprivate
check_defaults_DefaultParamHandlerprotected
chrom_fwhm_FeatureFindingMetaboprivate
CMD enum valueProgressLogger
computeAveragineSimScore_(const std::vector< double > &intensities, const double &molecular_weight) constFeatureFindingMetaboprivate
computeCosineSim_(const std::vector< double > &, const std::vector< double > &) constFeatureFindingMetaboprivate
current_logger_ProgressLoggermutableprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
elements_FeatureFindingMetaboprivate
elementsFromString_(const std::string &elements_string) constFeatureFindingMetaboprivate
enable_RT_filtering_FeatureFindingMetaboprivate
endProgress(UInt64 bytes_processed=0) constProgressLogger
error_name_DefaultParamHandlerprotected
FeatureFindingMetabo()FeatureFindingMetabo
findLocalFeatures_(const std::vector< const MassTrace * > &candidates, double total_intensity, std::vector< FeatureHypothesis > &output_hypotheses) constFeatureFindingMetaboprivate
getDefaults() constDefaultParamHandler
getLogType() constProgressLogger
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
getTheoreticIsotopicMassWindow_(const std::vector< Element const * > &alphabet, int peakOffset) constFeatureFindingMetaboprivate
GUI enum valueProgressLogger
isLegalIsotopePattern_(const FeatureHypothesis &feat_hypo) constFeatureFindingMetaboprivate
isotope_filt_svm_FeatureFindingMetaboprivate
isotope_filtering_model_FeatureFindingMetaboprivate
last_invoke_ProgressLoggermutableprotected
loadIsotopeModel_(const String &)FeatureFindingMetaboprivate
local_mz_range_FeatureFindingMetaboprivate
local_rt_range_FeatureFindingMetaboprivate
LogType enum nameProgressLogger
nextProgress() constProgressLogger
NONE enum valueProgressLogger
OpenMS::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
OpenMS::ProgressLogger::operator=(const ProgressLogger &other)ProgressLogger
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
ProgressLogger()ProgressLogger
ProgressLogger(const ProgressLogger &other)ProgressLogger
recursion_depth_ProgressLoggerprotectedstatic
remove_single_traces_FeatureFindingMetaboprivate
report_chromatograms_FeatureFindingMetaboprivate
report_convex_hulls_FeatureFindingMetaboprivate
report_smoothed_intensities_FeatureFindingMetaboprivate
report_summed_ints_FeatureFindingMetaboprivate
run(std::vector< MassTrace > &input_mtraces, FeatureMap &output_featmap, std::vector< std::vector< OpenMS::MSChromatogram > > &output_chromatograms)FeatureFindingMetabo
scoreMZ_(const MassTrace &, const MassTrace &, Size isotopic_position, Size charge, Range isotope_window) constFeatureFindingMetaboprivate
scoreMZByExpectedMean_(Size iso_pos, Size charge, const double diff_mz, double mt_variances) constFeatureFindingMetaboprivate
scoreMZByExpectedRange_(Size charge, const double diff_mz, double mt_variances, Range isotope_window) constFeatureFindingMetaboprivate
scoreRT_(const MassTrace &, const MassTrace &) constFeatureFindingMetaboprivate
setLogger(ProgressLoggerImpl *logger)ProgressLogger
setLogType(LogType type) constProgressLogger
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
setProgress(SignedSize value) constProgressLogger
startProgress(SignedSize begin, SignedSize end, const String &label) constProgressLogger
subsections_DefaultParamHandlerprotected
svm_feat_centers_FeatureFindingMetaboprivate
svm_feat_scales_FeatureFindingMetaboprivate
type_ProgressLoggermutableprotected
updateMembers_() overrideFeatureFindingMetaboprotectedvirtual
use_mz_scoring_by_element_range_FeatureFindingMetaboprivate
use_mz_scoring_C13_FeatureFindingMetaboprivate
use_smoothed_intensities_FeatureFindingMetaboprivate
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~FeatureFindingMetabo() overrideFeatureFindingMetabo
~ProgressLogger()ProgressLoggervirtual