OpenMS
SimpleTSGXLMS Member List

This is the complete list of members for SimpleTSGXLMS, including all inherited members.

add_a_ions_SimpleTSGXLMSprotected
add_abundant_immonium_ions_SimpleTSGXLMSprotected
add_b_ions_SimpleTSGXLMSprotected
add_c_ions_SimpleTSGXLMSprotected
add_charges_SimpleTSGXLMSprotected
add_first_prefix_ion_SimpleTSGXLMSprotected
add_isotopes_SimpleTSGXLMSprotected
add_k_linked_ions_SimpleTSGXLMSprotected
add_losses_SimpleTSGXLMSprotected
add_precursor_peaks_SimpleTSGXLMSprotected
add_x_ions_SimpleTSGXLMSprotected
add_y_ions_SimpleTSGXLMSprotected
add_z_ions_SimpleTSGXLMSprotected
addKLinkedIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int charge) constSimpleTSGXLMSprotectedvirtual
addLinearPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge=1, Size link_pos_2=0) constSimpleTSGXLMSprotectedvirtual
addLosses_(std::vector< SimplePeak > &spectrum, double mono_weight, int charge, LossIndex &losses) constSimpleTSGXLMSprotectedvirtual
addPrecursorPeaks_(std::vector< SimplePeak > &spectrum, double precursor_mass, int charge) constSimpleTSGXLMSprotectedvirtual
addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, int charge, Size link_pos_2=0) constSimpleTSGXLMSprotectedvirtual
addXLinkIonPeaks_(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, Residue::ResidueType res_type, std::vector< LossIndex > &forward_losses, std::vector< LossIndex > &backward_losses, LossIndex &losses_peptide2, int charge) constSimpleTSGXLMSprotectedvirtual
check_defaults_DefaultParamHandlerprotected
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
error_name_DefaultParamHandlerprotected
getBackwardLosses_(AASequence &peptide) constSimpleTSGXLMSprotected
getDefaults() constDefaultParamHandler
getForwardLosses_(AASequence &peptide) constSimpleTSGXLMSprotected
getLinearIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, int charge=1, Size link_pos_2=0) constSimpleTSGXLMSvirtual
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, AASequence &peptide, Size link_pos, double precursor_mass, int mincharge, int maxcharge, Size link_pos_2=0) constSimpleTSGXLMSvirtual
getXLinkIonSpectrum(std::vector< SimplePeak > &spectrum, OPXLDataStructs::ProteinProteinCrossLink &crosslink, bool frag_alpha, int mincharge, int maxcharge) constSimpleTSGXLMSvirtual
loss_db_SimpleTSGXLMSprotected
loss_H2O_SimpleTSGXLMSprotected
loss_NH3_SimpleTSGXLMSprotected
max_isotope_SimpleTSGXLMSprotected
operator=(const SimpleTSGXLMS &tsg)SimpleTSGXLMS
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
pre_int_SimpleTSGXLMSprotected
pre_int_H2O_SimpleTSGXLMSprotected
pre_int_NH3_SimpleTSGXLMSprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
SimpleTSGXLMS()SimpleTSGXLMS
SimpleTSGXLMS(const SimpleTSGXLMS &source)SimpleTSGXLMS
subsections_DefaultParamHandlerprotected
updateMembers_() overrideSimpleTSGXLMSvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
~DefaultParamHandler()DefaultParamHandlervirtual
~SimpleTSGXLMS() overrideSimpleTSGXLMS