abortPipeline() | TOPPASScene | slot |
action_mode_ | TOPPASScene | protected |
ActionMode enum name | TOPPASScene | |
addEdge(TOPPASEdge *te) | TOPPASScene | |
addHoveringEdge(const QPointF &pos) | TOPPASScene | slot |
addVertex(TOPPASVertex *tv) | TOPPASScene | |
allowed_threads_ | TOPPASScene | protected |
AM_MOVE enum value | TOPPASScene | |
AM_NEW_EDGE enum value | TOPPASScene | |
askForOutputDir(bool always_ask=true) | TOPPASScene | |
changed_ | TOPPASScene | protected |
changedOutputFolder() | TOPPASScene | slot |
changedParameter(const bool invalidates_running_pipeline) | TOPPASScene | slot |
checkIfWeAreDone() | TOPPASScene | |
clipboard_ | TOPPASScene | protected |
connectEdgeSignals(TOPPASEdge *e) | TOPPASScene | |
connectMergerVertexSignals(TOPPASMergerVertex *tmv) | TOPPASScene | |
connectOutputVertexSignals(TOPPASOutputVertex *oflv) | TOPPASScene | |
connectToolVertexSignals(TOPPASToolVertex *ttv) | TOPPASScene | |
connectVertexSignals(TOPPASVertex *tv) | TOPPASScene | |
ConstEdgeIterator typedef | TOPPASScene | |
ConstVertexIterator typedef | TOPPASScene | |
contextMenuEvent(QGraphicsSceneContextMenuEvent *event) override | TOPPASScene | protected |
copySelected() | TOPPASScene | |
createResources(TOPPASResources &resources) | TOPPASScene | |
description_text_ | TOPPASScene | protected |
dfsVisit_(TOPPASVertex *vertex) | TOPPASScene | protected |
dry_run_ | TOPPASScene | protected |
dryRunFinished(int, QProcess::ExitStatus) | TOPPASScene | signal |
EdgeContainer typedef | TOPPASScene | |
EdgeIterator typedef | TOPPASScene | |
edges_ | TOPPASScene | protected |
edgesBegin() | TOPPASScene | |
edgesEnd() | TOPPASScene | |
enqueueProcess(const TOPPProcess &process) | TOPPASScene | |
entirePipelineFinished() | TOPPASScene | signal |
error_occured_ | TOPPASScene | protected |
file_name_ | TOPPASScene | protected |
finishHoveringEdge() | TOPPASScene | slot |
getActionMode() | TOPPASScene | |
getDescription() const | TOPPASScene | |
getHoveringEdge() | TOPPASScene | |
getOutDir() const | TOPPASScene | |
getSaveFileName() | TOPPASScene | |
getTempDir() const | TOPPASScene | |
getVertexAt_(const QPointF &pos) | TOPPASScene | protected |
gui_ | TOPPASScene | protected |
hover_edge_ | TOPPASScene | protected |
include(TOPPASScene *new_scene, QPointF pos=QPointF()) | TOPPASScene | |
isDryRun() const | TOPPASScene | |
isEdgeAllowed_(TOPPASVertex *u, TOPPASVertex *v) | TOPPASScene | protected |
isGUIMode() const | TOPPASScene | |
isPipelineRunning() const | TOPPASScene | |
itemClicked() | TOPPASScene | slot |
itemReleased() | TOPPASScene | slot |
load(const String &file) | TOPPASScene | |
loadResources(const TOPPASResources &resources) | TOPPASScene | |
logOutputFileWritten(const String &file) | TOPPASScene | slot |
logToolCrashed() | TOPPASScene | slot |
logToolFailed() | TOPPASScene | slot |
logToolFinished() | TOPPASScene | slot |
logToolStarted() | TOPPASScene | slot |
logTOPPOutput(const QString &out) | TOPPASScene | slot |
mainWindowNeedsUpdate() | TOPPASScene | signal |
messageReady(const QString &msg) | TOPPASScene | signal |
moveSelectedItems(qreal dx, qreal dy) | TOPPASScene | slot |
openInTOPPView(QStringList all_files) | TOPPASScene | signal |
out_dir_ | TOPPASScene | protected |
paste(QPointF pos=QPointF()) | TOPPASScene | |
pipelineErrorSlot(int return_code=-1, const QString &msg="") | TOPPASScene | slot |
pipelineExecutionFailed(int return_code=-1) | TOPPASScene | signal |
potential_target_ | TOPPASScene | protected |
processFinished() | TOPPASScene | slot |
quitWithError(int exit_code) | TOPPASScene | slot |
refreshParameters() | TOPPASScene | |
RefreshStatus enum name | TOPPASScene | |
removeSelected() | TOPPASScene | |
requestClipboardContent() | TOPPASScene | signal |
resetDownstream(TOPPASVertex *vertex) | TOPPASScene | |
resetProcessesQueue() | TOPPASScene | |
resume_source_ | TOPPASScene | protected |
runNextProcess() | TOPPASScene | |
running_ | TOPPASScene | protected |
runPipeline() | TOPPASScene | |
sanityCheck_(bool allowUserOverride) | TOPPASScene | protected |
saveIfChanged() | TOPPASScene | |
saveMe() | TOPPASScene | signal |
selectionCopied(TOPPASScene *ts) | TOPPASScene | signal |
setActionMode(ActionMode mode) | TOPPASScene | |
setAllowedThreads(int num_threads) | TOPPASScene | |
setChanged(bool b) | TOPPASScene | |
setClipboard(TOPPASScene *clipboard) | TOPPASScene | |
setDescription(const QString &desc) | TOPPASScene | |
setOutDir(const QString &dir) | TOPPASScene | |
setPipelineRunning(bool b=true) | TOPPASScene | slot |
setSaveFileName(const String &name) | TOPPASScene | |
snapToGrid() | TOPPASScene | slot |
ST_REFRESH_CHANGED enum value | TOPPASScene | |
ST_REFRESH_CHANGEINVALID enum value | TOPPASScene | |
ST_REFRESH_NOCHANGE enum value | TOPPASScene | |
ST_REFRESH_REMAINSINVALID enum value | TOPPASScene | |
store(const String &file) | TOPPASScene | |
terminateCurrentPipeline() | TOPPASScene | signal |
threads_active_ | TOPPASScene | protected |
tmp_path_ | TOPPASScene | protected |
topoSort(bool resort_all=true) | TOPPASScene | |
topp_processes_queue_ | TOPPASScene | protected |
TOPPASScene(QObject *parent, const QString &tmp_path, bool gui=true) | TOPPASScene | |
unselectAll() | TOPPASScene | |
updateEdgeColors() | TOPPASScene | |
updateHoveringEdgePos(const QPointF &new_pos) | TOPPASScene | slot |
user_specified_out_dir_ | TOPPASScene | protected |
VertexContainer typedef | TOPPASScene | |
VertexIterator typedef | TOPPASScene | |
vertices_ | TOPPASScene | protected |
verticesBegin() | TOPPASScene | |
verticesEnd() | TOPPASScene | |
wasChanged() const | TOPPASScene | |
writeToLogFile_(const QString &text) | TOPPASScene | protected |
~TOPPASScene() override | TOPPASScene | |