OpenMS
MRMScoring Member List

This is the complete list of members for MRMScoring, including all inherited members.

calcLibraryScore(OpenSwath::IMRMFeature *mrmfeature, const std::vector< TransitionType > &transitions, double &correlation, double &norm_manhattan, double &manhattan, double &dotprod, double &spectral_angle, double &rmsd)MRMScoringstatic
calcMIPrecursorCombinedScore()MRMScoring
calcMIPrecursorContrastScore()MRMScoring
calcMIPrecursorScore()MRMScoring
calcMIScore()MRMScoring
calcMIWeightedScore(const std::vector< double > &normalized_library_intensity)MRMScoring
calcRTScore(const PeptideType &peptide, double normalized_experimental_rt)MRMScoringstatic
calcSeparateMIContrastScore()MRMScoring
calcSeparateSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators)MRMScoringstatic
calcSeparateXcorrContrastCoelutionScore()MRMScoring
calcSeparateXcorrContrastShapeScore()MRMScoring
calcSNScore(OpenSwath::IMRMFeature *mrmfeature, std::vector< OpenSwath::ISignalToNoisePtr > &signal_noise_estimators)MRMScoringstatic
calcXcorrCoelutionScore()MRMScoring
calcXcorrCoelutionWeightedScore(const std::vector< double > &normalized_library_intensity)MRMScoring
calcXcorrContrastCoelutionScore()MRMScoring
calcXcorrContrastShapeScore()MRMScoring
calcXcorrPrecursorCoelutionScore()MRMScoring
calcXcorrPrecursorCombinedCoelutionScore()MRMScoring
calcXcorrPrecursorCombinedShapeScore()MRMScoring
calcXcorrPrecursorContrastCoelutionScore()MRMScoring
calcXcorrPrecursorContrastShapeScore()MRMScoring
calcXcorrPrecursorContrastSumFragCoelutionScore()MRMScoring
calcXcorrPrecursorContrastSumFragShapeScore()MRMScoring
calcXcorrPrecursorShapeScore()MRMScoring
calcXcorrShapeScore()MRMScoring
calcXcorrShapeWeightedScore(const std::vector< double > &normalized_library_intensity)MRMScoring
FeatureType typedefMRMScoring
getMIContrastMatrix() constMRMScoring
getMIMatrix() constMRMScoring
getMIPrecursorCombinedMatrix() constMRMScoring
getMIPrecursorContrastMatrix() constMRMScoring
getXCorrContrastMatrix() constMRMScoring
getXCorrMatrix() constMRMScoring
getXCorrPrecursorCombinedMatrix() constMRMScoring
getXCorrPrecursorContrastMatrix() constMRMScoring
initializeMIContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids_set1, const std::vector< std::string > &native_ids_set2)MRMScoring
initializeMIMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids)MRMScoring
initializeMIPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)MRMScoring
initializeMIPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)MRMScoring
initializeMIPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids)MRMScoring
initializeXCorrContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids_set1, const std::vector< std::string > &native_ids_set2)MRMScoring
initializeXCorrMatrix(const std::vector< std::vector< double > > &data)MRMScoring
initializeXCorrMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &native_ids)MRMScoring
initializeXCorrPrecursorCombinedMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)MRMScoring
initializeXCorrPrecursorContrastMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids, const std::vector< std::string > &native_ids)MRMScoring
initializeXCorrPrecursorContrastMatrix(const std::vector< std::vector< double > > &data_precursor, const std::vector< std::vector< double > > &data_fragments)MRMScoring
initializeXCorrPrecursorMatrix(OpenSwath::IMRMFeature *mrmfeature, const std::vector< std::string > &precursor_ids)MRMScoring
mi_contrast_matrix_MRMScoringprivate
mi_matrix_MRMScoringprivate
mi_precursor_combined_matrix_MRMScoringprivate
mi_precursor_contrast_matrix_MRMScoringprivate
mi_precursor_matrix_MRMScoringprivate
PeptideType typedefMRMScoring
ProteinType typedefMRMScoring
SpectrumType typedefMRMScoring
TransitionType typedefMRMScoring
xcorr_contrast_matrix_MRMScoringprivate
xcorr_contrast_matrix_max_peak_sec_MRMScoringprivate
xcorr_matrix_MRMScoringprivate
xcorr_matrix_max_peak_MRMScoringprivate
xcorr_matrix_max_peak_sec_MRMScoringprivate
xcorr_precursor_combined_matrix_MRMScoringprivate
xcorr_precursor_contrast_matrix_MRMScoringprivate
xcorr_precursor_matrix_MRMScoringprivate
XCorrArrayType typedefMRMScoring
XCorrMatrixType typedefMRMScoring