| AddBackboneModel() | BALL::VIEW::AddBackboneModel | |
| AddBackboneModel(const AddBackboneModel &add_Backbone_model) | BALL::VIEW::AddBackboneModel | |
| AddCartoonModel() | BALL::VIEW::AddCartoonModel | |
| AddCartoonModel(const AddCartoonModel &cartoon_model) | BALL::VIEW::AddCartoonModel | |
| argument_pointer typedef | BALL::UnaryFunctor< Composite, Processor::Result > | |
| argument_reference typedef | BALL::UnaryFunctor< Composite, Processor::Result > | |
| argument_type typedef | BALL::UnaryFunctor< Composite, Processor::Result > | |
| arrow_width_ | BALL::VIEW::AddCartoonModel | protected |
| assignModelType(ModelPart &part) | BALL::VIEW::AddCartoonModel | protectedvirtual |
| assignNucleotideAtoms_(Residue &r, Size nr_atoms, String atom_names[10], Atom *atoms[10]) | BALL::VIEW::AddCartoonModel | protected |
| backbone_ | BALL::VIEW::AddBackboneModel | protected |
| beginNamedProperty() | BALL::PropertyManager | |
| calculateComplementaryBases_(const Composite &composite) | BALL::VIEW::AddCartoonModel | protected |
| calculateGuidePoints_() | BALL::VIEW::AddBackboneModel | protectedvirtual |
| calculateModelParts(Protein &protein) | BALL::VIEW::AddCartoonModel | protectedvirtual |
| calculateRibbonEllipse_(float ribbon_width, float ribbon_height) | BALL::VIEW::AddBackboneModel | inlineprotected |
| calculateRibbonPoints_(Vector3 xn, Vector3 dir, vector< Vector3 > &points) | BALL::VIEW::AddBackboneModel | inlineprotected |
| calculateTubePoints_(Vector3 right, Vector3 dir, vector< Vector3 > &points) | BALL::VIEW::AddBackboneModel | inlineprotected |
| care_for_SS_ | BALL::VIEW::AddBackboneModel | protected |
| clear() | BALL::VIEW::AddBackboneModel | virtual |
| clear_() | BALL::VIEW::AddBackboneModel | protectedvirtual |
| clearComposites() | BALL::VIEW::ModelProcessor | inlinevirtual |
| clearProperty(Property property) | BALL::PropertyManager | |
| clearProperty(const string &name) | BALL::PropertyManager | |
| collectPositions(vector< Residue * > residues) | BALL::VIEW::AddBackboneModel | protectedvirtual |
| complementary_bases_ | BALL::VIEW::AddCartoonModel | protected |
| const_argument_pointer typedef | BALL::UnaryFunctor< Composite, Processor::Result > | |
| const_argument_reference typedef | BALL::UnaryFunctor< Composite, Processor::Result > | |
| countNamedProperties() const | BALL::PropertyManager | |
| countProperties() const | BALL::PropertyManager | |
| create6Ring_(vector< Vector3 > positions) | BALL::VIEW::AddCartoonModel | protected |
| createDoubleRing_(const vector< Vector3 > &positions) | BALL::VIEW::AddCartoonModel | protected |
| createGeometricObjects() | BALL::VIEW::AddBackboneModel | virtual |
| createHelix_(Position set_first, Position part_pos) | BALL::VIEW::AddCartoonModel | protected |
| createModel_(Position set_pos, Position part_pos) | BALL::VIEW::AddCartoonModel | protectedvirtual |
| createRibbon_(Position set_pos, Position model_pos) | BALL::VIEW::AddBackboneModel | protectedvirtual |
| createSimpleNucleicAcid_(Position set_pos, Position part_pos) | BALL::VIEW::AddCartoonModel | protected |
| createStrand_(Position set_pos, Position part_pos) | BALL::VIEW::AddCartoonModel | protected |
| createTube_(Position set_pos, Position model_pos) | BALL::VIEW::AddBackboneModel | protectedvirtual |
| createTubeHelix_(Position set_first, Position part_pos) | BALL::VIEW::AddCartoonModel | protected |
| createWatsonCrickModel_(Position set_pos, Position part_pos) | BALL::VIEW::AddCartoonModel | protected |
| destroy() | BALL::PropertyManager | virtual |
| DNA_base_radius_ | BALL::VIEW::AddCartoonModel | protected |
| DNA_helix_radius_ | BALL::VIEW::AddCartoonModel | protected |
| DNA_ladder_radius_ | BALL::VIEW::AddCartoonModel | protected |
| draw_DNA_as_ladder_ | BALL::VIEW::AddCartoonModel | protected |
| draw_ribbon_ | BALL::VIEW::AddCartoonModel | protected |
| drawDNAAsLadderModel() | BALL::VIEW::AddCartoonModel | inline |
| drawing_precision_ | BALL::VIEW::ModelProcessor | protected |
| drawRiboseAtoms_(const Atom *atom1, const Atom *atom2, const Vector3 &v1, const Vector3 &v2) | BALL::VIEW::AddCartoonModel | protected |
| drawStrand_(const Vector3 &start, Vector3 &right, Vector3 &hn, float arrow_width, Position &last_vertices, Mesh &mesh) | BALL::VIEW::AddCartoonModel | inlineprotected |
| dummy_chain_ | BALL::VIEW::AddBackboneModel | protected |
| dummy_protein_ | BALL::VIEW::AddBackboneModel | protected |
| dummy_ss_ | BALL::VIEW::AddBackboneModel | protected |
| dump(std::ostream &s=std::cout, Size depth=0) const | BALL::VIEW::AddBackboneModel | virtual |
| enableRibbons(bool state) | BALL::VIEW::AddCartoonModel | inline |
| endNamedProperty() | BALL::PropertyManager | |
| evaluateBSpline(const Vector3 &v1, const Vector3 &v2, const Vector3 &v3, float x, Vector3 &result) | BALL::VIEW::AddBackboneModel | inlineprotected |
| finish() | BALL::UnaryProcessor< Composite > | inlinevirtual |
| geometric_objects_ | BALL::VIEW::ModelProcessor | protected |
| get(PropertyManager &property_manager) const | BALL::PropertyManager | |
| getArrowWidth() const | BALL::VIEW::AddCartoonModel | inline |
| getBitVector() | BALL::PropertyManager | |
| getBitVector() const | BALL::PropertyManager | |
| getDNABaseRadius() const | BALL::VIEW::AddCartoonModel | inline |
| getDNAHelixRadius() const | BALL::VIEW::AddCartoonModel | inline |
| getDNALadderRadius() const | BALL::VIEW::AddCartoonModel | inline |
| getDrawingPrecision() const | BALL::VIEW::ModelProcessor | |
| getGeometricObjects() | BALL::VIEW::ModelProcessor | inline |
| getGeometricObjects() const | BALL::VIEW::ModelProcessor | inline |
| getHelixRadius() const | BALL::VIEW::AddCartoonModel | inline |
| getNamedProperty(Position index) const | BALL::PropertyManager | |
| getNamedProperty(Position index) | BALL::PropertyManager | |
| getProperty(const string &name) const | BALL::PropertyManager | |
| getStrandHeight() const | BALL::VIEW::AddCartoonModel | inline |
| getStrandWidth() const | BALL::VIEW::AddCartoonModel | inline |
| getSurfaceDrawingPrecision() const | BALL::VIEW::ModelProcessor | |
| getTubeRadius() const | BALL::VIEW::AddBackboneModel | inline |
| guide_points_ | BALL::VIEW::AddBackboneModel | protected |
| hasProperty(Property property) const | BALL::PropertyManager | |
| hasProperty(const string &name) const | BALL::PropertyManager | |
| HELIX enum value | BALL::VIEW::AddCartoonModel | |
| helix_height_ | BALL::VIEW::AddCartoonModel | protected |
| helix_radius_ | BALL::VIEW::AddCartoonModel | protected |
| helix_width_ | BALL::VIEW::AddCartoonModel | protected |
| insertTriangle_(Position v1, Position v2, Position v3, Mesh &mesh) | BALL::VIEW::AddCartoonModel | protected |
| interpolate_() | BALL::VIEW::AddBackboneModel | protectedvirtual |
| interpolated_points_ | BALL::VIEW::AddBackboneModel | protected |
| interpolation_steps_ | BALL::VIEW::AddBackboneModel | protected |
| isValid() const | BALL::VIEW::ModelProcessor | inlinevirtual |
| last_protein_ | BALL::VIEW::AddBackboneModel | protected |
| middle_ribbon_ | BALL::VIEW::AddBackboneModel | protected |
| middle_slide_ | BALL::VIEW::AddBackboneModel | protected |
| model_parts_ | BALL::VIEW::AddBackboneModel | protected |
| ModelProcessor() | BALL::VIEW::ModelProcessor | |
| ModelProcessor(const ModelProcessor &model_processor) | BALL::VIEW::ModelProcessor | |
| ModelTypes enum name | BALL::VIEW::AddBackboneModel | protected |
| NUCLEIC_ACID enum value | BALL::VIEW::AddBackboneModel | protected |
| number_of_ribbons_ | BALL::VIEW::AddBackboneModel | protected |
| offsets_ | BALL::VIEW::AddBackboneModel | protected |
| operator BitVector &() | BALL::PropertyManager | |
| operator!=(const PropertyManager &pm) const | BALL::PropertyManager | |
| operator()(Composite &composite) | BALL::VIEW::AddBackboneModel | virtual |
| operator=(const PropertyManager &property_manager) | BALL::PropertyManager | |
| operator==(const PropertyManager &pm) const | BALL::PropertyManager | |
| PropertyManager() | BALL::PropertyManager | |
| PropertyManager(const PropertyManager &property_manager) | BALL::PropertyManager | |
| read(PersistenceManager &pm) | BALL::PropertyManager | |
| refineGuidePoints_() | BALL::VIEW::AddCartoonModel | protectedvirtual |
| refineModelParts_() | BALL::VIEW::AddBackboneModel | protectedvirtual |
| renderNucleotideOutline_(const vector< Vector3 > &positions, Vector3 uv, Mesh &mesh) | BALL::VIEW::AddCartoonModel | protected |
| residues_to_be_rendered_ | BALL::VIEW::AddBackboneModel | protected |
| residuesAreConnected_(Residue &residue1, Residue &residue2) | BALL::VIEW::AddBackboneModel | inlineprotected |
| result_type typedef | BALL::UnaryFunctor< Composite, Processor::Result > | |
| RIBBON enum value | BALL::VIEW::AddBackboneModel | protected |
| ribbon_height_ | BALL::VIEW::AddBackboneModel | protected |
| ribbon_mode_ | BALL::VIEW::AddBackboneModel | protected |
| ribbon_radius_ | BALL::VIEW::AddCartoonModel | protected |
| ribbon_width_ | BALL::VIEW::AddCartoonModel | protected |
| ribbonModeEnabled() const | BALL::VIEW::AddBackboneModel | inline |
| ribbonsEnabled() const | BALL::VIEW::AddCartoonModel | inline |
| set(const PropertyManager &property_manager) | BALL::PropertyManager | |
| setArrowWidth(float width) | BALL::VIEW::AddCartoonModel | inline |
| setDNABaseRadius(float r) | BALL::VIEW::AddCartoonModel | inline |
| setDNAHelixRadius(float r) | BALL::VIEW::AddCartoonModel | inline |
| setDNALadderRadius(float r) | BALL::VIEW::AddCartoonModel | inline |
| setDrawDNAAsLadderModel(bool state) | BALL::VIEW::AddCartoonModel | inline |
| setDrawingPrecision(Index precision) | BALL::VIEW::ModelProcessor | |
| setHelixRadius(float radius) | BALL::VIEW::AddCartoonModel | inline |
| setProperty(Property property) | BALL::PropertyManager | |
| setProperty(const NamedProperty &property) | BALL::PropertyManager | |
| setProperty(const string &name) | BALL::PropertyManager | |
| setProperty(const string &name, bool value) | BALL::PropertyManager | |
| setProperty(const string &name, int value) | BALL::PropertyManager | |
| setProperty(const string &name, unsigned int value) | BALL::PropertyManager | |
| setProperty(const string &name, float value) | BALL::PropertyManager | |
| setProperty(const string &name, double value) | BALL::PropertyManager | |
| setProperty(const string &name, const string &value) | BALL::PropertyManager | |
| setProperty(const string &name, const PersistentObject &value) | BALL::PropertyManager | |
| setRibbonMode(bool state) | BALL::VIEW::AddBackboneModel | inline |
| setStrandHeight(float heigth) | BALL::VIEW::AddCartoonModel | inline |
| setStrandWidth(float w) | BALL::VIEW::AddCartoonModel | inline |
| setSurfaceDrawingPrecision(float precision) | BALL::VIEW::ModelProcessor | |
| setTubeRadius(float radius) | BALL::VIEW::AddBackboneModel | inline |
| slides_ | BALL::VIEW::AddBackboneModel | protected |
| slides_angle_ | BALL::VIEW::AddBackboneModel | protected |
| ss_ | BALL::VIEW::AddBackboneModel | protected |
| start() | BALL::VIEW::AddBackboneModel | virtual |
| STRAND enum value | BALL::VIEW::AddCartoonModel | |
| strand_height_ | BALL::VIEW::AddCartoonModel | protected |
| strand_width_ | BALL::VIEW::AddCartoonModel | protected |
| surface_drawing_precision_ | BALL::VIEW::ModelProcessor | protected |
| swap(PropertyManager &property_manager) | BALL::PropertyManager | |
| temp_matrix_ | BALL::VIEW::AddBackboneModel | protected |
| toggleProperty(Property property) | BALL::PropertyManager | |
| TUBE enum value | BALL::VIEW::AddBackboneModel | protected |
| tube_radius_ | BALL::VIEW::AddBackboneModel | protected |
| Types enum name | BALL::VIEW::AddCartoonModel | |
| UnaryProcessor() | BALL::UnaryProcessor< Composite > | inline |
| UnaryProcessor(const UnaryProcessor &) | BALL::UnaryProcessor< Composite > | inline |
| write(PersistenceManager &pm) const | BALL::PropertyManager | |
| xs_ | BALL::VIEW::AddBackboneModel | protected |
| ys_ | BALL::VIEW::AddBackboneModel | protected |
| ~AddBackboneModel() | BALL::VIEW::AddBackboneModel | virtual |
| ~AddCartoonModel() | BALL::VIEW::AddCartoonModel | virtual |
| ~ModelProcessor() | BALL::VIEW::ModelProcessor | virtual |
| ~PropertyManager() | BALL::PropertyManager | virtual |
| ~UnaryProcessor() | BALL::UnaryProcessor< Composite > | inlinevirtual |
1.8.3.1