BALL::SolventExcludedSurface Class Reference

#include <BALL/STRUCTURE/solventExcludedSurface.h>

Public Types
Type definitions
typedef std::vector< SESVertex * > ::iterator	VertexIterator
typedef std::vector< SESVertex * > ::const_iterator	ConstVertexIterator
typedef std::vector< SESEdge * > ::iterator	EdgeIterator
typedef std::vector< SESEdge * > ::const_iterator	ConstEdgeIterator
typedef std::list< SESEdge * > ::iterator	SingularEdgeIterator
typedef std::list< SESEdge * > ::const_iterator	ConstSingularEdgeIterator
typedef std::vector< SESFace * > ::iterator	ContactFaceIterator
typedef std::vector< SESFace * > ::const_iterator	ConstContactFaceIterator
typedef std::vector< SESFace * > ::iterator	SphericFaceIterator
typedef std::vector< SESFace * > ::const_iterator	ConstSphericFaceIterator
typedef std::vector< SESFace * > ::iterator	ToricFaceIterator
typedef std::vector< SESFace * > ::const_iterator	ConstToricFaceIterator

Public Member Functions
Constructors and Destructors
	SolventExcludedSurface ()
	SolventExcludedSurface (const SolventExcludedSurface &ses, bool=false)
	SolventExcludedSurface (ReducedSurface *reduced_surface)
virtual	~SolventExcludedSurface ()
Accessors
void	clear ()
void	clean (const double &density)
void	compute () throw (Exception::GeneralException)
void	splitSphericFaces ()
bool	check ()
External Iterators
VertexIterator	beginVertex ()
ConstVertexIterator	beginVertex () const
VertexIterator	endVertex ()
ConstVertexIterator	endVertex () const
EdgeIterator	beginEdge ()
ConstEdgeIterator	beginEdge () const
EdgeIterator	endEdge ()
ConstEdgeIterator	endEdge () const
SingularEdgeIterator	beginSingularEdge ()
ConstSingularEdgeIterator	beginSingularEdge () const
SingularEdgeIterator	endSingularEdge ()
ConstSingularEdgeIterator	endSingularEdge () const
ContactFaceIterator	beginContactFace ()
ConstContactFaceIterator	beginContactFace () const
ContactFaceIterator	endContactFace ()
ConstContactFaceIterator	endContactFace () const
SphericFaceIterator	beginSphericFace ()
ConstSphericFaceIterator	beginSphericFace () const
SphericFaceIterator	endSphericFace ()
ConstSphericFaceIterator	endSphericFace () const
ToricFaceIterator	beginToricFace ()
ConstToricFaceIterator	beginToricFace () const
ToricFaceIterator	endToricFace ()
ConstToricFaceIterator	endToricFace () const

Protected Attributes
Position	number_of_vertices_
::std::vector< SESVertex * >	vertices_
Position	number_of_edges_
::std::vector< SESEdge * >	edges_
Position	number_of_singular_edges_
::std::list< SESEdge * >	singular_edges_
Position	number_of_contact_faces_
::std::vector< SESFace * >	contact_faces_
Position	number_of_toric_faces_
::std::vector< SESFace * >	toric_faces_
Position	number_of_spheric_faces_
::std::vector< SESFace * >	spheric_faces_
ReducedSurface *	reduced_surface_

Private Member Functions
void	splitSphericFace (Position i)
void	deleteSmallToricFace (SESFace *face)
void	deleteSmallSingularToricFace (SESFace *face)
bool	cleanToricFace (SESFace *face, const double &sqrt_density)
bool	cleanSingularToricFace (SESFace *face, const double &sqrt_density)
void	cleanVertices ()
void	cleanEdges ()
void	cleanContactFaces ()
void	cleanToricFaces ()
void	cleanSphericFaces ()

Friends
Class friends
class SESComputer class SESSingularityCleaner class TriangulatedSES class SESTriangulator
class	SESComputer
class	SESSingularityCleaner
class	TriangulatedSES
class	SESTriangulator

Detailed Description

Generic SolventExcludedSurface Class.

Definition at line 66 of file solventExcludedSurface.h.

Member Typedef Documentation

typedef std::vector<SESFace*>::const_iterator BALL::SolventExcludedSurface::ConstContactFaceIterator

Definition at line 104 of file solventExcludedSurface.h.

typedef std::vector<SESEdge*>::const_iterator BALL::SolventExcludedSurface::ConstEdgeIterator

Definition at line 96 of file solventExcludedSurface.h.

typedef std::list<SESEdge*>::const_iterator BALL::SolventExcludedSurface::ConstSingularEdgeIterator

Definition at line 100 of file solventExcludedSurface.h.

typedef std::vector<SESFace*>::const_iterator BALL::SolventExcludedSurface::ConstSphericFaceIterator

Definition at line 108 of file solventExcludedSurface.h.

typedef std::vector<SESFace*>::const_iterator BALL::SolventExcludedSurface::ConstToricFaceIterator

Definition at line 112 of file solventExcludedSurface.h.

typedef std::vector<SESVertex*>::const_iterator BALL::SolventExcludedSurface::ConstVertexIterator

Definition at line 92 of file solventExcludedSurface.h.

typedef std::vector<SESFace*>::iterator BALL::SolventExcludedSurface::ContactFaceIterator

Definition at line 102 of file solventExcludedSurface.h.

typedef std::vector<SESEdge*>::iterator BALL::SolventExcludedSurface::EdgeIterator

Definition at line 94 of file solventExcludedSurface.h.

typedef std::list<SESEdge*>::iterator BALL::SolventExcludedSurface::SingularEdgeIterator

Definition at line 98 of file solventExcludedSurface.h.

typedef std::vector<SESFace*>::iterator BALL::SolventExcludedSurface::SphericFaceIterator

Definition at line 106 of file solventExcludedSurface.h.

typedef std::vector<SESFace*>::iterator BALL::SolventExcludedSurface::ToricFaceIterator

Definition at line 110 of file solventExcludedSurface.h.

typedef std::vector<SESVertex*>::iterator BALL::SolventExcludedSurface::VertexIterator

Definition at line 90 of file solventExcludedSurface.h.

Constructor & Destructor Documentation

BALL::SolventExcludedSurface::SolventExcludedSurface

(

)

Default constructor. This method creates a new SolventExcludedSurface object.

BALL::SolventExcludedSurface::SolventExcludedSurface	(	const SolventExcludedSurface &	ses,
		bool	= false
	)

Copy constructor. Create a new SolventExcludedSurface object from another.

Parameters

ses	the SolventExcludedSurface object to be copied
bool	ignored - just for interface consistency

BALL::SolventExcludedSurface::SolventExcludedSurface

(

ReducedSurface *

reduced_surface

)

Detailed constructor

virtual BALL::SolventExcludedSurface::~SolventExcludedSurface ( )

virtual

Destructor. As there are no dynamic data structures, nothing happens.

Member Function Documentation

ContactFaceIterator BALL::SolventExcludedSurface::beginContactFace

(

)

ConstContactFaceIterator BALL::SolventExcludedSurface::beginContactFace

(

)

const

EdgeIterator BALL::SolventExcludedSurface::beginEdge

(

)

ConstEdgeIterator BALL::SolventExcludedSurface::beginEdge

(

)

const

SingularEdgeIterator BALL::SolventExcludedSurface::beginSingularEdge

(

)

ConstSingularEdgeIterator BALL::SolventExcludedSurface::beginSingularEdge

(

)

const

SphericFaceIterator BALL::SolventExcludedSurface::beginSphericFace

(

)

ConstSphericFaceIterator BALL::SolventExcludedSurface::beginSphericFace

(

)

const

ToricFaceIterator BALL::SolventExcludedSurface::beginToricFace

(

)

ConstToricFaceIterator BALL::SolventExcludedSurface::beginToricFace

(

)

const

VertexIterator BALL::SolventExcludedSurface::beginVertex

(

)

ConstVertexIterator BALL::SolventExcludedSurface::beginVertex

(

)

const

bool BALL::SolventExcludedSurface::check

(

)

void BALL::SolventExcludedSurface::clean

(

const double &

density

)

void BALL::SolventExcludedSurface::cleanContactFaces ( )

private

void BALL::SolventExcludedSurface::cleanEdges ( )

private

bool BALL::SolventExcludedSurface::cleanSingularToricFace ( SESFace *  face, const double &  sqrt_density  )

private

void BALL::SolventExcludedSurface::cleanSphericFaces ( )

private

bool BALL::SolventExcludedSurface::cleanToricFace ( SESFace *  face, const double &  sqrt_density  )

private

void BALL::SolventExcludedSurface::cleanToricFaces ( )

private

void BALL::SolventExcludedSurface::cleanVertices ( )

private

void BALL::SolventExcludedSurface::clear

(

)

void BALL::SolventExcludedSurface::compute

(

)

throw (Exception::GeneralException)

Computes the solvent excluded surface from a ReducedSurface object

void BALL::SolventExcludedSurface::deleteSmallSingularToricFace ( SESFace *  face )

private

void BALL::SolventExcludedSurface::deleteSmallToricFace ( SESFace *  face )

private

ContactFaceIterator BALL::SolventExcludedSurface::endContactFace

(

)

ConstContactFaceIterator BALL::SolventExcludedSurface::endContactFace

(

)

const

EdgeIterator BALL::SolventExcludedSurface::endEdge

(

)

ConstEdgeIterator BALL::SolventExcludedSurface::endEdge

(

)

const

SingularEdgeIterator BALL::SolventExcludedSurface::endSingularEdge

(

)

ConstSingularEdgeIterator BALL::SolventExcludedSurface::endSingularEdge

(

)

const

SphericFaceIterator BALL::SolventExcludedSurface::endSphericFace

(

)

ConstSphericFaceIterator BALL::SolventExcludedSurface::endSphericFace

(

)

const

ToricFaceIterator BALL::SolventExcludedSurface::endToricFace

(

)

ConstToricFaceIterator BALL::SolventExcludedSurface::endToricFace

(

)

const

VertexIterator BALL::SolventExcludedSurface::endVertex

(

)

ConstVertexIterator BALL::SolventExcludedSurface::endVertex

(

)

const

void BALL::SolventExcludedSurface::splitSphericFace ( Position  i )

private

void BALL::SolventExcludedSurface::splitSphericFaces

(

)

Friends And Related Function Documentation

friend class SESComputer

friend

Definition at line 78 of file solventExcludedSurface.h.

friend class SESSingularityCleaner

friend

Definition at line 79 of file solventExcludedSurface.h.

friend class SESTriangulator

friend

Definition at line 81 of file solventExcludedSurface.h.

friend class TriangulatedSES

friend

Definition at line 80 of file solventExcludedSurface.h.

Member Data Documentation

::std::vector<SESFace*> BALL::SolventExcludedSurface::contact_faces_

protected

Definition at line 281 of file solventExcludedSurface.h.

::std::vector<SESEdge*> BALL::SolventExcludedSurface::edges_

protected

Definition at line 269 of file solventExcludedSurface.h.

Position BALL::SolventExcludedSurface::number_of_contact_faces_

protected

Definition at line 278 of file solventExcludedSurface.h.

Position BALL::SolventExcludedSurface::number_of_edges_

protected

Definition at line 266 of file solventExcludedSurface.h.

Position BALL::SolventExcludedSurface::number_of_singular_edges_

protected

Definition at line 272 of file solventExcludedSurface.h.

Position BALL::SolventExcludedSurface::number_of_spheric_faces_

protected

Definition at line 290 of file solventExcludedSurface.h.

Position BALL::SolventExcludedSurface::number_of_toric_faces_

protected

Definition at line 284 of file solventExcludedSurface.h.

Position BALL::SolventExcludedSurface::number_of_vertices_

protected

Definition at line 260 of file solventExcludedSurface.h.

ReducedSurface* BALL::SolventExcludedSurface::reduced_surface_

protected

Definition at line 296 of file solventExcludedSurface.h.

::std::list<SESEdge*> BALL::SolventExcludedSurface::singular_edges_

protected

Definition at line 275 of file solventExcludedSurface.h.

::std::vector<SESFace*> BALL::SolventExcludedSurface::spheric_faces_

protected

Definition at line 293 of file solventExcludedSurface.h.

::std::vector<SESFace*> BALL::SolventExcludedSurface::toric_faces_

protected

Definition at line 287 of file solventExcludedSurface.h.

::std::vector<SESVertex*> BALL::SolventExcludedSurface::vertices_

protected

Definition at line 263 of file solventExcludedSurface.h.