BALL: peptides.h Source File

00001 // -*- Mode: C++; tab-width: 2; -*-
00002 // vi: set ts=2:
00003 //
00004 // $Id: peptides.h,v 1.10 2005/12/23 17:02:03 amoll Exp $
00005 //
00006 
00007 #ifndef BALL_STRUCTURE_PEPTIDES_H
00008 #define BALL_STRUCTURE_PEPTIDES_H
00009 
00010 #ifndef BALL_COMMON_H
00011 # include <BALL/common.h>
00012 #endif
00013 
00014 #ifndef BALL_KERNEL_PROTEIN_H
00015 # include <BALL/KERNEL/protein.h>
00016 #endif
00017 
00018 namespace BALL 
00019 {
00020 
00021   namespace Peptides
00022   {
00027 
00029     typedef std::list<String> ThreeLetterAASequence;
00030 
00032     typedef String OneLetterAASequence;
00034 
00039 
00044     BALL_EXPORT char OneLetterCode(const String& aa);
00045 
00051     BALL_EXPORT String ThreeLetterCode(char aa);
00052 
00056     BALL_EXPORT OneLetterAASequence ThreeLetterToOneLetter(const ThreeLetterAASequence& sequence);
00057   
00061     BALL_EXPORT ThreeLetterAASequence OneLetterToThreeLetter(const OneLetterAASequence& sequence);
00062 
00068     BALL_EXPORT OneLetterAASequence GetSequence(const Protein& protein);
00070     
00071   }  // namespace Peptides
00072 
00073 } // namespace BALL
00074 
00075 #endif // BALL_STRUCTURE_PEPTIDES_H_
00076 
00077