File List

Here is a list of all documented files with brief descriptions:

addHydrogenProcessor.h [code]
amber.h [code]
amberBend.h [code]
amberConfigurationDialog.h [code]
amberConfigurationDialogData.h [code]
amberEvaluation.h [code]
amberNonBonded.h [code]
amberStretch.h [code]
amberTorsion.h [code]
analyticalGeometry.h [code]
analyticalSES.h [code]
angle.h [code]
anisotropyShiftProcessor.h [code]
aromaticityProcessor.h [code]
aromaticRingStacking.h [code]
assignBondOrderConfigurationDialog.h [code]
assignBondOrderConfigurationDialogData.h [code]
assignBondOrderProcessor.h [code]
assignBondOrderResultsDialog.h [code]
assignBondOrderResultsDialogData.h [code]
assignShiftProcessor.h [code]
assignTypes.h [code]
atom.h [code]
atomBijection.h [code]
atomBondModelBaseProcessor.h [code]
atomContainer.h [code]
atomContainerIterator.h [code]
atomicContactEnergy.h [code]
atomIterator.h [code]
atomOverview.h [code]
atomOverviewData.h [code]
atomTyper.h [code]
atomTypes.h [code]
atomVector.h [code]
autoDeletable.h [code]
backboneModel.h [code]
ballAndStickModel.h [code]
BALLPlugin.h [code]
baseFunction.h [code]
baseFunctor.h [code]
baseIterator.h [code]
benchmark.h [code]
bidirectionalIterator.h [code]
bindingPocketProcessor.h [code]
bitVector.h [code]
bond.h [code]
bondIterator.h [code]
bondProperties.h [code]
bondPropertiesData.h [code]
box.h [code]
box3.h [code]
bruker1DFile.h [code]
bruker2DFile.h [code]
bufferedRenderer.h [code]
buildBondsProcessor.h [code]
buriedPolar.h [code]
buttonEvent.h [code]
canonicalMD.h [code]
canvasWidget.h [code]
cartoonModel.h [code]
chain.h [code]
chainBuilder.h [code]
chainIterator.h [code]
chargeRuleProcessor.h [code]
charmm.h [code]
charmmBend.h [code]
charmmConfigurationDialog.h [code]
charmmConfigurationDialogData.h [code]
charmmEEF1.h [code]
charmmImproperTorsion.h [code]
charmmNonBonded.h [code]
charmmStretch.h [code]
charmmTorsion.h [code]
CHPI.h [code]
circle3.h [code]
classTest.h [code]
claverieParameter.h [code]
clearShiftProcessor.h [code]
client.h [code]
clippingDialog.h [code]
clippingDialogData.h [code]
clippingPlane.h [code]
colorExtensions.h [code]
colorHSV.h [code]
coloringSettingsDialog.h [code]
coloringSettingsDialogData.h [code]
colorMap.h [code]
colorProcessor.h [code]
colorRGBA.h [code]
colorUnit.h [code]
colorUnitHue.h [code]
common.h [code]
MATHS/common.h [code]
VIEW/KERNEL/common.h [code]
comparator.h [code]
complex.h [code]
composedEnergyProcessor.h [code]
composite.h [code]
compositeManager.h [code]
compositeProperties.h [code]
compositePropertiesData.h [code]
concept.h [code]
config.h [code]
conformationSet.h [code]
conjugateGradient.h [code]
connectionObject.h [code]
connectivityBase.h [code]
connectivityDescriptors.h [code]
constants.h [code]
contour.h [code]
contourLine.h [code]
contourSurface.h [code]
contourSurfaceDialog.h [code]
contourSurfaceDialogData.h [code]
cosineTorsion.h [code]
coulomb.h [code]
create.h [code]
createSpectrumProcessor.h [code]
dataset.h [code]
datasetControl.h [code]
datatype.h [code]
DBInterface.h [code]
DCDFile.h [code]
debug.h [code]
defaultProcessors.h [code]
descriptor.h [code]
deviceEvent.h [code]
directory.h [code]
disc.h [code]
displayProperties.h [code]
displayPropertiesData.h [code]
distanceCoulomb.h [code]
DNAMutator.h [code]
dockDialog.h [code]
dockDialogData.h [code]
dockingAlgorithm.h [code]
dockingController.h [code]
dockProgressDialog.h [code]
dockProgressDialogData.h [code]
dockResult.h [code]
dockResultDialog.h [code]
dockResultDialogData.h [code]
dockWidget.h [code]
downloadPDBFile.h [code]
downloadPDBFileData.h [code]
DSN6File.h [code]
editableScene.h [code]
editFunctions.h [code]
editOperationDialog.h [code]
editSettings.h [code]
editSettingsData.h [code]
editSingleShortcut.h [code]
editSingleShortcutData.h [code]
EFShiftProcessor.h [code]
electrostaticPotentialCalculator.h [code]
embeddable.h [code]
energeticEvaluation.h [code]
energy.h [code]
energyMinimizer.h [code]
energyProcessor.h [code]
enumerator.h [code]
exception.h [code]
experiment.h [code]
exportGeometryDialog.h [code]
exportGeometryDialogData.h [code]
expression.h [code]
expressionParser.h [code]
expressionPredicate.h [code]
expressionTree.h [code]
extractors.h [code]
factory.h [code]
fakeDriver.h [code]
FDPBDialog.h [code]
FDPBDialogData.h [code]
fermiBaseFunction.h [code]
FFT1D.h [code]
FFT2D.h [code]
FFT3D.h [code]
fftwCommon.h [code]
fieldLineCreator.h [code]
fieldLinesDialog.h [code]
fieldLinesDialogData.h [code]
file.h [code]
fileObserver.h [code]
fileSystem.h [code]
forceField.h [code]
forceFieldComponent.h [code]
forceFieldEvaluation.h [code]
forceFieldParameters.h [code]
forceModel.h [code]
DATATYPE/forEach.h [code]
KERNEL/forEach.h [code]
format.h [code]
forwardIterator.h [code]
fragment.h [code]
fragmentDB.h [code]
fragmentIterator.h [code]
fresnoTypes.h [code]
function.h [code]
GAFFCESParser.h [code]
GAFFTypeProcessor.h [code]
GAMESSDatFile.h [code]
GAMESSLogFile.h [code]
generalizedBornCase.h [code]
genericControl.h [code]
genericMolFile.h [code]
geometricControl.h [code]
geometricFit.h [code]
geometricFitDialog.h [code]
geometricFitDialogData.h [code]
geometricObject.h [code]
geometricProperties.h [code]
geometricTransformations.h [code]
glDisplayList.h [code]
COMMON/global.h [code]
KERNEL/global.h [code]
glOffscreenTarget.h [code]
glRenderer.h [code]
glRenderWindow.h [code]
gradient.h [code]
graphEdge.h [code]
graphFace.h [code]
graphVertex.h [code]
gridVisualisation.h [code]
gridVisualizationDialog.h [code]
gridVisualizationDialogData.h [code]
haighMallionShiftProcessor.h [code]
hash.h [code]
hashGrid.h [code]
hashMap.h [code]
hashSet.h [code]
HBondModel.h [code]
HBondProcessor.h [code]
HBondShiftProcessor.h [code]
headTrackingEvent.h [code]
helpViewer.h [code]
HINFile.h [code]
hybridisationProcessor.h [code]
hydrogenBond.h [code]
INIFile.h [code]
init.h [code]
inputDeviceDriver.h [code]
inputDevPluginHandler.h [code]
inputPlugin.h [code]
iterator.h [code]
JCAMPFile.h [code]
johnsonBoveyShiftProcessor.h [code]
KCFFile.h [code]
kekulizer.h [code]
kernel.h [code]
label.h [code]
labelDialog.h [code]
labelDialogData.h [code]
labelModel.h [code]
lennardJones.h [code]
lightSettings.h [code]
lightSettingsData.h [code]
limits.h [code]
line.h [code]
line3.h [code]
linearBaseFunction.h [code]
lineBasedFile.h [code]
lineModel.h [code]
lineSearch.h [code]
lipophilic.h [code]
list.h [code]
logStream.h [code]
logView.h [code]
macros.h [code]
mainControl.h [code]
mainControlPreferences.h [code]
mainControlPreferencesData.h [code]
materialSettings.h [code]
materialSettingsData.h [code]
maths.h [code]
matrix44.h [code]
MD5Hash.h [code]
mesh.h [code]
message.h [code]
metal.h [code]
microCanonicalMD.h [code]
minimizationDialog.h [code]
minimizationDialogData.h [code]
MMFF94.h [code]
MMFF94ConfigurationDialog.h [code]
MMFF94ConfigurationDialogData.h [code]
MMFF94NonBonded.h [code]
MMFF94OutOfPlaneBend.h [code]
MMFF94Parameters.h [code]
MMFF94Processors.h [code]
MMFF94StretchBend.h [code]
MMFF94Torsion.h [code]
modelInformation.h [code]
modelProcessor.h [code]
modelSettingsDialog.h [code]
modelSettingsDialogData.h [code]
modifyRepresentationDialog.h [code]
modifyRepresentationDialogData.h [code]
modularWidget.h [code]
MOL2File.h [code]
molecularControl.h [code]
molecularDynamics.h [code]
molecularDynamicsDialog.h [code]
molecularDynamicsDialogData.h [code]
molecularFileDialog.h [code]
molecularGraph.h [code]
molecularInformation.h [code]
molecularStructure.h [code]
molecularSurfaceGrid.h [code]
molecule.h [code]
moleculeAssembler.h [code]
moleculeIterator.h [code]
moleculeObjectCreator.h [code]
MOLFile.h [code]
molFileFactory.h [code]
molmec.h [code]
motionTrackingEvent.h [code]
multiLine.h [code]
mutex.h [code]
networking.h [code]
networkPreferences.h [code]
networkPreferencesData.h [code]
nmr.h [code]
NMRStarFile.h [code]
nonpolarSolvation.h [code]
notification.h [code]
nucleicAcid.h [code]
nucleicAcidIterator.h [code]
nucleotide.h [code]
nucleotideIterator.h [code]
numericalIntegrator.h [code]
numericalSAS.h [code]
object.h [code]
objectCreator.h [code]
ooiEnergy.h [code]
openBruker1DFile.h [code]
openBruker2DFile.h [code]
openSavePreferences.h [code]
openSavePreferencesData.h [code]
options.h [code]
pair6_12InteractionEnergyProcessor.h [code]
pair6_12RDFIntegrator.h [code]
pairExpInteractionEnergyProcessor.h [code]
pairExpRDFIntegrator.h [code]
parameters.h [code]
parameterSection.h [code]
parsedFunction.h [code]
parsedFunctionDialog.h [code]
parsedFunctionDialogData.h [code]
parserDefinitions.h [code]
partialChargeBase.h [code]
partialChargeDescriptors.h [code]
partialChargeProcessor.h [code]
path.h [code]
PCMCavFreeEnergyProcessor.h [code]
PDBAtom.h [code]
PDBAtomIterator.h [code]
PDBdefs.h [code]
PDBFile.h [code]
PDBInfo.h [code]
PDBRecords.h [code]
peak.h [code]
peakList.h [code]
peptideBuilder.h [code]
peptideDialog.h [code]
peptideDialogData.h [code]
peptides.h [code]
periodicBoundary.h [code]
persistenceManager.h [code]
persistentObject.h [code]
piecewiseFunction.h [code]
piecewisePolynomial.h [code]
pierottiCavFreeEnergyProcessor.h [code]
pixelFormat.h [code]
plane3.h [code]
pluginDialog.h [code]
pluginDialogData.h [code]
pluginHandler.h [code]
pluginManager.h [code]
point.h [code]
poissonBoltzmann.h [code]
polarSolvation.h [code]
potential1210.h [code]
POVRenderer.h [code]
CONCEPT/predicate.h [code]
KERNEL/predicate.h [code]
preferences.h [code]
preferencesData.h [code]
preferencesEntry.h [code]
preferencesObject.h [code]
processor.h [code]
property.h [code]
protein.h [code]
proteinIterator.h [code]
PTE.h [code]
PTEDialog.h [code]
PTEDialogData.h [code]
pubchemDialog.h [code]
pubchemDialogData.h [code]
pyBALLSipHelper.h [code]
pyColorRGBAVector.h [code]
pyCompositeList.h [code]
pyConstant.h [code]
pyDatasetVector.h [code]
pyIndexList.h [code]
pyInterpreter.h [code]
pyListHelper.h [code]
pythonSettings.h [code]
pythonSettingsData.h [code]
pyWidget.h [code]
quadMesh.h [code]
quadraticAngleBend.h [code]
quadraticBondStretch.h [code]
quadraticImproperTorsion.h [code]
quadruple.h [code]
quaternion.h [code]
radialDistributionFunction.h [code]
radiusRuleProcessor.h [code]
randomAccessIterator.h [code]
randomCoilShiftProcessor.h [code]
randomEvaluation.h [code]
randomNumberGenerator.h [code]
raytraceableContourSurfaceDialog.h [code]
raytraceableContourSurfaceDialogData.h [code]
raytraceableGrid.h [code]
RDFIntegrator.h [code]
RDFParameter.h [code]
RDFSection.h [code]
reconstructFragmentProcessor.h [code]
reducedSurface.h [code]
regularData1D.h [code]
regularData1DWidget.h [code]
regularData2D.h [code]
regularData2DWidget.h [code]
regularData3D.h [code]
regularExpression.h [code]
reissCavFreeEnergyProcessor.h [code]
renderer.h [code]
renderSetup.h [code]
renderTarget.h [code]
renderWindow.h [code]
representation.h [code]
representationManager.h [code]
residue.h [code]
residueChecker.h [code]
residueIterator.h [code]
residueRotamerSet.h [code]
residueTorsions.h [code]
resourceFile.h [code]
ringAnalyser.h [code]
ringClusterer.h [code]
ringPerceptionProcessor.h [code]
RMSDMinimizer.h [code]
rombergIntegrator.h [code]
rotamerLibrary.h [code]
rotationalEntropyLoss.h [code]
rsConstructor.h [code]
RSEdge.h [code]
RSFace.h [code]
RSVertex.h [code]
rtti.h [code]
ruleEvaluator.h [code]
ruleProcessor.h [code]
runGAMESSDialog.h [code]
SASEdge.h [code]
SASFace.h [code]
SASVertex.h [code]
scene.h [code]
scoringComponent.h [code]
scoringFunction.h [code]
scoringTypes.h [code]
SCWRLRotamerFile.h [code]
SDFile.h [code]
sdGenerator.h [code]
SDWidget.h [code]
secondaryStructure.h [code]
secondaryStructureIterator.h [code]
secondaryStructureProcessor.h [code]
selectable.h [code]
selector.h [code]
serverPreferences.h [code]
serverWidget.h [code]
SESEdge.h [code]
SESFace.h [code]
SESVertex.h [code]
setCamera.h [code]
setCameraData.h [code]
setClippingPlane.h [code]
setClippingPlaneData.h [code]
shiftedLVMM.h [code]
shiftModel.h [code]
shiftModule.h [code]
shortcutDialog.h [code]
shortcutDialogData.h [code]
shortcutRegistry.h [code]
shortcutTableView.h [code]
simpleBase.h [code]
simpleBox.h [code]
simpleBox3.h [code]
simpleDescriptors.h [code]
slickEnergy.h [code]
slickScore.h [code]
smartsMatcher.h [code]
smartsParser.h [code]
smilesParser.h [code]
snapShot.h [code]
snapShotManager.h [code]
snapShotVisualisation.h [code]
snapShotVisualisationData.h [code]
solvation.h [code]
solventAccessibleSurface.h [code]
solventDescriptor.h [code]
solventExcludedSurface.h [code]
solventParameter.h [code]
spectrum.h [code]
sphere.h [code]
sphere3.h [code]
stage.h [code]
stageSettings.h [code]
stageSettingsData.h [code]
standardColorProcessor.h [code]
standardDatasets.h [code]
standardPredicates.h [code]
steepestDescent.h [code]
stereoSettingsDialog.h [code]
stereoSettingsDialogData.h [code]
STLRenderer.h [code]
strangLBFGS.h [code]
string.h [code]
stringHashMap.h [code]
stringHashSet.h [code]
structure.h [code]
structureMapper.h [code]
support.h [code]
surface.h [code]
surfaceBase.h [code]
surfaceDescriptors.h [code]
surfaceModel.h [code]
surfaceProcessor.h [code]
sysinfo.h [code]
KERNEL/system.h [code]
system.h [code]
systemCalls.h [code]
TCPTransfer.h [code]
templates.h [code]
testFramework.h [code]
textPersistenceManager.h [code]
threads.h [code]
tilingRenderer.h [code]
timer.h [code]
timeStamp.h [code]
trajectoryFile.h [code]
transformationEvent6D.h [code]
triangle.h [code]
triangleEdge.h [code]
trianglePoint.h [code]
triangulatedSAS.h [code]
triangulatedSES.h [code]
triangulatedSurface.h [code]
triple.h [code]
TRRFile.h [code]
tube.h [code]
twoColoredLine.h [code]
twoColoredTube.h [code]
typenameRuleProcessor.h [code]
typeRuleProcessor.h [code]
UCK.h [code]
uhligCavFreeEnergyProcessor.h [code]
vanDerWaals.h [code]
vanDerWaalsModel.h [code]
vector2.h [code]
vector3.h [code]
vector4.h [code]
version.h [code]
vertex1.h [code]
vertex2.h [code]
vertexBuffer.h [code]
VIEWPlugin.h [code]
visitor.h [code]
VRMLRenderer.h [code]
XDRPersistenceManager.h [code]
XYZFile.h [code]