Class List

Here are the classes, structs, unions and interfaces with brief descriptions:

BALL::VIEW::AddBackboneModel	AddBackboneModel class
BALL::VIEW::AddBallAndStickModel	AddBallAndStickModel class
BALL::VIEW::AddCartoonModel	AddCartoonModel class
BALL::AddHydrogenProcessor	Saturate atoms with hydrogen atoms
BALL::Addition< First, Second, DataType >	Addition class
BALL::PDB::AdditionalAtomInfo	A structure tracking the current values of all auxiliary information required to write ATOM or HETATM records
BALL::VIEW::AddLineModel	AddLineModel class
BALL::VIEW::AddSurfaceModel	AddSurfaceModel class
BALL::VIEW::AddVanDerWaalsModel	AddVanDerWaalsModel class
BALL::AmberBend	Amber bond stretch component
BALL::VIEW::AmberConfigurationDialog	Dialog for changing the options of the AMBER forcefield
BALL::AmberEvaluation	A class for energetic evaluators of docking results using an AMBER force field as scoring function
BALL::AmberFF	AMBER force field class
BALL::AmberFF::AmberFF::Default	Default values for AMBER options
BALL::AmberFF::AmberFF::Option	Option names
BALL::AmberNonBonded	Amber NonBonded (VdW + Electrostatic) component
BALL::AmberStretch	Amber bond stretch component
BALL::AmberTorsion	Amber bond stretch component
BALL::Peptides::AminoAcidDescriptor	This class represents one amino acid in the sequence
BALL::AnisotropyShiftProcessor	Shift assignment processor implementing Anisotropy
BALL::AromaticBondsPredicate	Predicate class for atoms bearing a certain number of aromatic bonds
BALL::AromaticityProcessor	Processor method to detect aromaticity of AtomContainers
BALL::AromaticityProcessor::AromaticityProcessor::Default	Default values for options
BALL::AromaticityProcessor::AromaticityProcessor::Option	Option names
BALL::AssignBaseProcessor	Only used for deriving interface
BALL::VIEW::AssignBondOrderConfigurationDialog	Dialog for changing the options of the assignBondOrderProcessor
BALL::AssignBondOrderProcessor	Bond Order assignment processor
BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Default	Default values for options
BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option	Option names
BALL::VIEW::AssignBondOrderResultsDialog	Dialog for presenting the bond order assingment sets and generating structures for each found solution
BALL::AssignChargeProcessor	Assigns a charge to each atom
BALL::AssignRadiusProcessor	Assigns the radius to each atom
BALL::AssignShiftProcessor	Set a property called chemical_shift
BALL::AssignTypeNameProcessor	Assign type names to atoms
BALL::AssignTypeProcessor	Type assignment processor
BALL::Atom	Atom class
BALL::AtomBijection	Atom bijection
BALL::VIEW::AtomBondModelBaseProcessor	AtomBondModelBaseProcessor class
BALL::VIEW::AtomChargeColorProcessor	AtomChargeColorProcessor class
BALL::AtomContainer	Atom Container Base Class
BALL::AtomContainerIteratorTraits	Traits class for the AtomContainerIterators
BALL::VIEW::AtomDistanceColorProcessor	AtomDistanceColorProcessor class
BALL::AtomicPolarizabilities	This descriptor adds up the atomic polarizabilities for all atoms
BALL::AtomInformationContent	This descriptor is $n$ times MeanAtomInformationContent
BALL::AtomIteratorTraits	Traits class for the AtomIterators
BALL::AtomNamePredicate	Predicate for matching atom names
BALL::VIEW::AtomOverview	Dialog for creating labels for a selection of molecular objects
BALL::AtomTypePredicate	Predicate for matching atom types
BALL::AtomTyper	Base class for a programable Atom typer
BALL::AtomTypes	Force Field Atom Type Class
BALL::AtomVector	Atom vector class
BALL::AutoDeletable	Auto-deletable concept
BALL::AxialPredicate	Axial predicate
BALL::BackBonePredicate	Predicate indicating backbone atoms
BALL::BalabanIndexJ	The Balaban index J is topological index
BALL::VIEW::BALLThread	Baseclass for threads in BALL
BALL::BaseIterator< Container, DataType, Position, Traits >	Generic Iterator Class
BALL::BidirectionalIterator< Container, DataType, Position, Traits >	Mutable bidirectional iterator
BALL::BinaryFileAdaptor< T >	Helper class for data conversion
BALL::BinaryFunctor< FirstArgumentType, SecondArgumentType, ResultType >	Generic Binary Functor Class
BALL::BinaryPredicate< T1, T2 >	Generic Binary Predicate Class
BALL::BinaryProcessor< T1, T2 >	Generic Binary Processor Class
BALL::BindingPocketProcessor	This processor searches for binding pockets in a given atom container
BALL::BindingPocketProcessor::BindingPocketProcessor::Default	Defaults
BALL::BindingPocketProcessor::BindingPocketProcessor::Option	Options
BALL::Bit	Bit Class
BALL::Bit::Bit::IllegalOperation	Exception thrown if a file could not be processed right
BALL::BitVector	Bit vector class
BALL::Bond	Bond class
BALL::Bond::Bond::NotBound	Not bound to two atoms
BALL::BondPolarizabilities	This descriptor is calculated by adding up the differences in atomic polarizabilities of the both participating atoms through all bonds
BALL::VIEW::BondProperties	Dialog for showing and changing the properties of the bonds of an atom
BALL::PDB::BookKeeping	This struct contains the number of records in a PDB file as required for the MASTER record
BALL::BoundingBoxProcessor	Bounding box creating processor
BALL::VIEW::Box	Box class
BALL::Bruker1DFile	Bruker 1D spectrum format
BALL::Bruker2DFile	Bruker 2D spectrum format
BALL::VIEW::BufferedRenderer	Interface for Buffered Rendering
BALL::Exception::BufferOverflow	Buffer overflow exception
BALL::BuildBondsProcessor	Bond creation processor
BALL::BuildBondsProcessor::BuildBondsProcessor::Default	Default values for options
BALL::BuildBondsProcessor::BuildBondsProcessor::Option	Option names
BALL::BuriedPolar	Fresno buried polar component
BALL::BuriedPolar::BuriedPolar::Default	Default values for SLICK options
BALL::BuriedPolar::BuriedPolar::Option	Option names
BALL::VIEW::ButtonEvent	This event encodes button states of a custom input device
BALL::VIEW::Camera	Camera with viewpoint, a look at point and an up-vector
BALL::CanonicalMD	A MD simulation in the canoncial ensemble
BALL::CanonicalMD::CanonicalMD::AuxFactors	Helper class containing auxiliary factors
BALL::Chain	Protein chain class
BALL::ChainBuilder	This class provides methods for analysis of the chains in a molecule
BALL::ChainIteratorTraits	Traits class for the various ChainIterators
BALL::ChainPredicate	Predicate for matching chains
BALL::ChargePredicate	Charge predicate
BALL::ChargeRuleProcessor	Charge Rule Processor
BALL::CharmmBend	Charmm bond stretch component
BALL::VIEW::CharmmConfigurationDialog	Dialog for changing the options of the CHARMM forcefield
BALL::CharmmEEF1	Force Field Parameter Section for CHARMM EEF1
BALL::CharmmEEF1::CharmmEEF1::Data	?????
BALL::CharmmEEF1::CharmmEEF1::Values	?????
BALL::CharmmFF	CHARMM force field class
BALL::CharmmFF::CharmmFF::Default	Default values
BALL::CharmmFF::CharmmFF::Option	Options names
BALL::CharmmImproperTorsion	Charmm improper torsion component
BALL::CharmmNonBonded	Charmm NonBonded component
BALL::CharmmStretch	Charmm bond stretch component
BALL::CharmmTorsion	CHARMM torsion component
BALL::ChemScoreMetal	ChemScore Metal component { Definition:} {BALL/MOLMEC/SLICK/chemScoreMetal.h}
BALL::CHPI	SLICK ringstacking component
BALL::CHPI::CHPI::AromaticRing	A class for storing aromatic rings and information associated with them
BALL::CHPI::CHPI::CHGroup	A class for storing aliphatic CH groups suitable for building CH- interactions with aromatic rings
BALL::ClaverieParameter	ClaverieParameter class
BALL::ClearChargeProcessor	Clears the charge on all atoms
BALL::ClearRadiusProcessor	Clears the radius of all atoms
BALL::ClearShiftProcessor	Clear assigned shift data of all atoms
BALL::Client	Client class
BALL::Client::Client::InvalidClient	InvalidClient exception class
BALL::Client::Client::NoPersistentObject	NoPersistentObject exception class
BALL::VIEW::ClippingDialog	Dialog for selcting which Representations are clipped by one clipping plane
BALL::VIEW::ClippingPlane	ClippingPlane
BALL::VIEW::ColorExtension2	Base class for geometric objects that need two colors
BALL::VIEW::ColorHSV	ColorHSV class
BALL::VIEW::ColoringSettingsDialog	Dialog for the molecular model coloring settings
BALL::VIEW::ColorMap	This class is used to implement a color Map that can be used to map a floating point value into a color
BALL::VIEW::ColorProcessor	Calculating colors for given GeometricObject instances
BALL::VIEW::ColorRGBA	ColorRGBA class
BALL::VIEW::ColorUnit	ColorUnit class
BALL::VIEW::ColorUnit::ColorUnit::NotInHexFormat	NotInHexFormat Exception class
BALL::VIEW::ColorUnitHue	Value for the hue component of the class ColorHSV
BALL::Comparator< T >	Generic Comparator Class
BALL::ComposedEnergyProcessor	A class for composed energy calculations
BALL::Composite	Composite Class
BALL::CompositeIteratorTraits	Composite Iterator Traits This class is used in the implementation of the kernel iterators
BALL::VIEW::CompositeManager	CompositeManager class
BALL::VIEW::CompositeMessage	CompositeMessage is the base class of all messages concerning the change of one Composite
BALL::VIEW::CompositeProperties	Dialog for showing and changing the properties of an Composite, e.g
BALL::Conformation4C1Predicate	Predicate for determining whether a sugar ring is in 4C1 conformation
BALL::ConformationSet	Data structure for conformation results
BALL::ConjugateGradientMinimizer	A minimizer for geometry optimization based on different conjugate gradient (CG) algorithms
BALL::ConjugateGradientMinimizer::ConjugateGradientMinimizer::Default	Defaults for all options
BALL::ConjugateGradientMinimizer::ConjugateGradientMinimizer::Option	Options names
BALL::ConnectedToPredicate	Predicate class for atoms being connected to a constellation defined by an expression
BALL::VIEW::ConnectionObject	Base class for all widgets and dialogs that handles communication through message posting
BALL::ConnectivityBase	Generic QSAR molecular connectivity descriptors class \
BALL::Constant	Python constants namespace wrapper
BALL::ConstantFunction< constant_template >	Constant function class
BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >	Constant Bidirectional Iterator
BALL::ConstForwardIterator< Container, DataType, Position, Traits >	Generic non-mutable forward itterator
BALL::VIEW::ContourSurfaceDialog	Dialog for creating contour surfaces from RegularData3D
BALL::VIEW::ControlSelectionMessage	Used to inform MainControl of selection in MolecularControl (not the one of the checkboxes!) and the other way round
BALL::CosineTorsion	Cosine Torsion
BALL::VIEW::CreateRepresentationMessage	Notify the DisplayProperties dialog so that it creates a new Representation
BALL::CreateSpectrumProcessor	Processor creates peaklist_
BALL::CubicFunction< Function, DataType >	CubicFunction class
BALL::Exception::CUDAError	CUDA Error CUDA or any of its calls caused an error
BALL::VIEW::CustomColorProcessor	CustomColorProcessor colorizes every GeometricObject with the default color
BALL::VIEW::Dataset	Baseclass for datasets
BALL::VIEW::DatasetControl	DatasetControl is a widget to manage and manipulate arbitrary data types
BALL::VIEW::DatasetController	Controller base class for one type of Dataset A DatasetController provides all neccessary means to manage and manipulate a kind of data in the DatasetControl
BALL::VIEW::DatasetMessage	Message to notify about changes in a Dataset
BALL::DCDFile	DCD Trajectory file format
BALL::Density	This descriptor calculates the density of the molecule, by deviding the molecular weight by the van der Waals surface area
BALL::Descriptor	Generic QSAR molecular descriptor class
BALL::VIEW::DeselectControlsMessage	Message send by one GenericControl to notify all other GenericControl instances to deselect their QListView
BALL::Directory	Directory class
BALL::VIEW::Disc	Disc class
BALL::VIEW::DisplayProperties	Dialog for creating and changing representations for a selection of molecular objects
BALL::Division< First, Second, DataType >	Division class
BALL::Exception::DivisionByZero	Division by zero error
BALL::VIEW::DockDialog	Dialog for docking / redocking two systems
BALL::DockingAlgorithm	Interface class for docking algorithms
BALL::VIEW::DockingController	Class for docking two systems
BALL::VIEW::DockingFinishedMessage	Message to notify docking has finished
BALL::VIEW::DockingThread	Thread for Docking
BALL::VIEW::DockProgressDialog	Dialog for showing the progress during a docking calculation
BALL::DockResult	Result of a (re)docking calculation
BALL::DockResult::DockResult::Compare_	Nested class in DockResult
BALL::DockResult::DockResult::Scoring_	Nested class in DockResult
BALL::VIEW::DockResultController	Controller base class for one type of Dataset
BALL::VIEW::DockResultDialog	Dialog for showing the docking results
BALL::VIEW::DockResultDialog::DockResultDialog::Compare_	Nested class in DockResultDialog
BALL::VIEW::DockWidget	Class for ModularWidget, which can be docked in the MainApplication window
BALL::DoubleBondsPredicate	Predicate for atoms bearing double bonds
BALL::VIEW::DownloadPDBFile	Dialog to search for and download structure files from the PDB data bank
BALL::DSN6File	DSN6 density map file format
BALL::VIEW::EditableScene	Extended 3D view for editing molecules
BALL::VIEW::EditFunctions	EditFunctions class
BALL::VIEW::EditOperationDialog	Dialog for storing the undo Operations of EditableScene
BALL::VIEW::EditSettings	EditSettings is a widget that will be inserted into the tab dialog Preferences
BALL::VIEW::EditSingleShortcut	Widget for customizing BALLView shortcuts
BALL::EFShiftProcessor	Shift assignment processor implementing the electric field effect
BALL::ElectrostaticPotentialCalculator	This class is used to compute the electrostatic potential for of a system
BALL::ElectrostaticPotentialCalculator::ElectrostaticPotentialCalculator::Default	Default values for the options in ElectrostaticPotentialCalculator::options
BALL::ElectrostaticPotentialCalculator::ElectrostaticPotentialCalculator::Option	Symbolic names for option keys
BALL::Element	Element class
BALL::VIEW::ElementColorProcessor	ElementColorProcessor class
BALL::ElementPredicate	Predicate for matching elements
BALL::Embeddable	Python Embedding Base Class
BALL::EnergeticEvaluation	Base class for energetic evaluators of docking results
BALL::EnergyMinimizer	EnergyMinimizer
BALL::EnergyMinimizer::EnergyMinimizer::Option	Option names
BALL::VIEW::EnergyMinimizerThread	Thread for EnergyMinimization
BALL::EnergyProcessor	Processor for energy calculations
BALL::Enumerator< Container, SiteIterator, Variant >	Enumerator class
BALL::EnumeratorIndex	EnumeratorIndex class
BALL::EnumeratorIndex::EnumeratorIndex::IncompatibleIndex	Exception for reporting incompatible EnumeratorIndex instances, i.e
BALL::Experiment< PeakListType >	Class describing a certain type of NMR experiment
BALL::Expression	Expression class
BALL::ExpressionParser	Expression Parser
BALL::ExpressionParser::ExpressionParser::SyntaxTree	SyntaxTree
BALL::ExpressionPredicate	ExpressionPredicate
BALL::ExpressionTree	Expression tree class
BALL::Factory< T >	Factory class
BALL::FalsePredicate	False predicate
BALL::FDPB	Finite Difference Poisson Boltzmann Solver
BALL::FDPB::FDPB::Boundary	This struct contains symbols for the available boundary conditions
BALL::FDPB::FDPB::ChargeDistribution	Constants to define the charge distribution methods
BALL::FDPB::FDPB::Default	Default values for FDPB options
BALL::FDPB::FDPB::DielectricSmoothing	Constants to define the dielectric smoothing methods
BALL::FDPB::FDPB::FastAtomStruct	Compact internal datastructure for the administration of the atoms extracted from the system
BALL::FDPB::FDPB::Option	Symbolic names for option keys
BALL::VIEW::FDPBDialog	Dialog for performing Finite Distance Poisson Bolzmann calculations
BALL::FermiBaseFunction	Sigmoidal base function
BALL::VIEW::FetchHTMLThread	Thread to fetch a file over TCP network traffic
BALL::VIEW::FieldLineCreator	FieldLineCreator class
BALL::VIEW::FieldLinesDialog	Dialog for creating field lines
BALL::File	File Class
BALL::File::File::CannotWrite	Exception CannotWrite A given file could not be written, either because its not open or it has a wrong open mode
BALL::Exception::FileNotFound	File not found
BALL::VIEW::FileObserver	Class for observing changes in a molecular file
BALL::FileSystem	File System Class This class is a wrapper around some very basic properties of the machine's file system properties
BALL::VIEW::ForceColorProcessor	Coloring by the forces, acting on atoms
BALL::ForceField	Force field class
BALL::ForceFieldComponent	Generic force field component class
BALL::ForceFieldEvaluation	Base class for energetic evaluators of docking results using a force field as scoring function
BALL::ForceFieldParameters	Force field parameter class
BALL::VIEW::ForceModel	ForceModel class
BALL::FormalCharge	This descriptor adds up the formal charges
BALL::Exception::FormatUnsupported	BufferedRenderer error An unsuported format was requested from BufferedRenderer via setFrameBufferFormat
BALL::ForwardIterator< Container, DataType, Position, Traits >	Generic mutable forward iterator class
BALL::Fragment	Fragment class
BALL::FragmentDB	FragmentDB - fragment database class
BALL::FragmentDB::FragmentDB::BuildBondsProcessor	Bond creation processor
BALL::FragmentDB::FragmentDB::NoFragmentNode	No fragment node found
BALL::FragmentDB::FragmentDB::NormalizeNamesProcessor	Name normalization processor
BALL::FragmentDistanceCollector	Collects all MolecularFragments that are close enough to another molecular fragment
BALL::FragmentIteratorTraits	Traits class for the FragmentIterator
BALL::VIEW::FrameBufferFormat	This is used by the RenderTarget to specify in which formats it can provide buffers
BALL::GAFFTypeProcessor::GAFFTypeProcessor::TypeDefinition	Nested class definitions
BALL::GAMESSDatFile	GAMESSDat file class
BALL::GAMESSDatFile::GAMESSDatFile::block	Nested class for the data blocks of the GAMESSFile
BALL::GAMESSDatFile::GAMESSDatFile::State	State of the parser
BALL::GAMESSLogFile	GAMESSLog file class
BALL::GAMESSLogFile::GAMESSLogFile::State	State of the parser
BALL::Exception::GeneralException	General exception class
BALL::GeneralizedBornModel	Compute the electrostatics of a molecule in solution
BALL::VIEW::GenericControl	GenericControl is a widget to display the structure of Composite objects
BALL::GenericMolFile	Base class for all molecule file format classes
BALL::VIEW::GenericSelectionMessage	GenericSelectionMessage class
BALL::GeometricCenterProcessor	Calculates the geometric center of a given Composite object
BALL::VIEW::GeometricControl	GeometricControl is a widget to display the list of representations
BALL::GeometricFit	GeometricFit This class is derived from class DockingAlgorithm
BALL::GeometricFit::GeometricFit::Option	Symbolic names for option keys
BALL::GeometricFit::GeometricFit::Peak_	Nested class Peak_ This class is needed for an efficient handling of all peaks corresponding to one orientation in a multiset
BALL::GeometricFit::GeometricFit::RotationAngles_	Nested class RotationAngles_
BALL::VIEW::GeometricFitDialog	Dialog for options of the docking algorithm GeometricFit
BALL::VIEW::GeometricObject	GeometricObject class
BALL::VIEW::GeometricObjectSelectionMessage	GeometricObjectSelectionMessage class
BALL::VIEW::GLDisplayList	GLDisplayList class
BALL::VIEW::GLDisplayList::GLDisplayList::DisplayListRedeclaration	DisplayListRedeclaration exception class
BALL::VIEW::GLDisplayList::GLDisplayList::NestedDisplayList	NestedDisplayList exception class
BALL::VIEW::GLDisplayList::GLDisplayList::NoDisplayListAvailable	NoDisplayListAvailable exception class
BALL::Exception::GlobalExceptionHandler	Class handling uncaught exception globally
BALL::GlobalInitializer	General initialization class for the BALL library
BALL::VIEW::GLOffscreenTarget	Model of the RenderWindow which uses OpenGL to render its buffer into a file
BALL::VIEW::GLRenderer	GLRenderer Renderer which provides hardware accelerated OPENGL rendering
BALL::VIEW::GLRenderer::GLRenderer::WrongModes	WrongModes Exception class
BALL::VIEW::GLRenderWindow	Model of the RenderWindow which uses OpenGL to render its buffer to the screen
BALL::Gradient	Gradient class
BALL::GraphEdge< Vertex, Edge, Face >	Generic GraphEdge Class
BALL::GraphFace< Vertex, Edge, Face >	Generic GraphFace Class
BALL::GraphTriangle< Vertex, Edge, Face >	Generic GraphTriangle Class
BALL::GraphVertex< Vertex, Edge, Face >	Generic GraphVertex Class
BALL::VIEW::GridVisualisation	GridVisualisation
BALL::VIEW::GridVisualizationDialog	Dialog for visualizing grids
BALL::HaighMallionShiftProcessor	Shift assignment processor implementing Haigh Mallion theory
BALL::HashFunction< T >	General Hash Function Template
BALL::HashGrid3< Item >	Three-dimensional Hash Grid Class
BALL::HashGridBox3< Item >	Grid Box Class
BALL::HashGridBox3< Item >::HashGridBox3::DataItem	?????
BALL::HashMap< Key, T >	HashMap class based on the STL map (containing serveral convenience functions)
BALL::HashMap< Key, T >::HashMap::IllegalKey	HashMap illegal key exception
BALL::HashSet< Key >	Generic Hash Set Class
BALL::HashSet< Key >::HashSet::IllegalKey	Illegal key exception
BALL::VIEW::HBondModelProcessor	HBondModelProcessor class
BALL::HBondProcessor	This processor computes all hydrogen bonds occuring between amino acids in the composite it is applied to
BALL::HBondShiftProcessor	Shift assignment processor implementing the effect of hydrogen bonds
BALL::VIEW::HelpViewer	DockWidget to show online help texts e.g
BALL::HINFile	HyperChem file class
BALL::VIEW::HotkeyTable	Class for storing Python hotkeys in a GUI table
BALL::HybridisationProcessor	Hybridisation processor
BALL::HybridisationProcessor::HybridisationProcessor::AtomNames_	The atom names for each bond angle
BALL::HybridisationProcessor::HybridisationProcessor::Default	Default values for options
BALL::HybridisationProcessor::HybridisationProcessor::Elements_	Struct for atom types and hybridization states
BALL::HybridisationProcessor::HybridisationProcessor::Option	Option names
BALL::HydrogenBond	Fresno Hydrogen Bond component
BALL::HydrogenBond::HydrogenBond::Default	Default values for SLICK options
BALL::HydrophobicVdWSurface	This descriptor calculates the sum of atomic SAS van der Waals surface areas of the molecule, of the hydrophobic atoms
BALL::Exception::IllegalPosition	Invalid Position
BALL::Exception::IllegalSelfOperation	Illegal self operation
BALL::Exception::IllegalTreeOperation	Illegal tree operation
BALL::Exception::IncompatibleIterators	Incompatible iterator
BALL::Exception::IndexOverflow	Index overflow
BALL::Exception::IndexUnderflow	Index underflow
BALL::INIFile	INIFile
BALL::INIFile::INIFile::IteratorTraits_	Interface for the LineIterator
BALL::INIFile::INIFile::Section	A section within an INI file
BALL::VIEW::InputDevPluginHandler	See PluginHandler for detailed documentation
BALL::InRingPredicate	Predicate for atoms being included in rings of a certain number
BALL::VIEW::InterpolateColorProcessor	Base class for ColorProcessors, that interpolate between two values
BALL::Exception::InvalidArgument	Invalid Argument Use this exception when a function is called with an invalid argument and no other exception applies
BALL::Exception::InvalidFormat	Invalid format
BALL::Exception::InvalidIterator	Invalid iterator
BALL::Exception::InvalidOption	Exception to be thrown if an invalid option is given
BALL::Exception::InvalidRange	Invalid range
BALL::Exception::InvalidSize	Invalid Size Throw this exception to indicate that a size was unexpected
BALL::JCAMPFile	JCAMP file class
BALL::JohnsonBoveyShiftProcessor	Shift assignment processor implementing Johnson Bovey theory
BALL::KCFFile	KEGG KCF file class
BALL::Kekuliser	Class to transform bonds with type "aromatic" to conjugated single and double bonds
BALL::KernelPredicate< T >	Kernel predicate class
BALL::VIEW::Label	Label class
BALL::VIEW::LabelDialog	Dialog for creating labels for a selection of molecular objects
BALL::VIEW::LabelModel	LabelModel class
BALL::LennardJones	Lennard Jones parameter section
BALL::VIEW::LightSettings	Dialog for setting the lighting, which is added to the Preferences
BALL::VIEW::LightSource	Light source is mainly used for Renderer classes (e.g
BALL::Limits< T >	Numeric limits class
BALL::VIEW::Line	Line class
BALL::LinearBaseFunction	Linear base function
BALL::LineBasedFile	A class for the convenient parsing of line-based file formats
BALL::LineSearch	Basic line search class
BALL::Lipophilic	Fresno lipophilic component
BALL::Lipophilic::Lipophilic::Default	Default values for SLICK options
BALL::Lipophilic::Lipophilic::Option	Option names
BALL::List< Value >	Extended list object
BALL::VIEW::LogEvent	Event class used for thread safe output to logview
BALL::LogStream	Log Stream Class
BALL::LogStreamBuf	Stream buffer used by LogStream
BALL::VIEW::LogView	LogView class
BALL::VIEW::MainControl	MainControl is the main administration unit for a program and must be used by all applications
BALL::VIEW::MainControlPreferences	MainControlPreferences is a widget that will be inserted into the tab dialog Preferences
BALL::VIEW::MaterialSettings	Dialog for setting the Material, which is added to the Preferences
BALL::MD5Hash	MD5 hash of a string
BALL::VIEW::MDSimulationThread	Thread for MDSimulation
BALL::MeanAtomInformationContent	Atom information content (mean)
BALL::VIEW::Mesh	Mesh class
BALL::VIEW::MeshBuffer	Wrapper class to draw BALLView Mesh instances with OpenGL vertex buffer objects
BALL::VIEW::Message	General Message class
BALL::VIEW::MessageEvent	A QT Event, that can contain a VIEW message
BALL::MicroCanonicalMD	Microcanonical MD: A class for doing molecular dynamics simulations according to the principle of a microcanonical ensemble (NVE), i.e., the total energy of the system is kept constant
BALL::MicroCanonicalMD::MicroCanonicalMD::AuxFactors	A local auxiliary class
BALL::VIEW::MinimizationDialog	Dialog for performing energy minimisations
BALL::MMFF94	MMFF94 force field class
BALL::MMFF94::MMFF94::Default	Default values for MMFF94 options
BALL::MMFF94::MMFF94::Option	Option names
BALL::MMFF94AtomType	Class to store the values of an atom type from MMFFPROP.PAR
BALL::MMFF94AtomTypeEquivalences	MMFF94 equivalences for atom types (see MMFFDEF.PAR)
BALL::MMFF94AtomTypes	MMFF94 parameters for atom types (see MMFFPROP.PAR)
BALL::MMFF94BendParameters	MMFF94 parameters for bond bending (see MMFFANG.PAR)
BALL::MMFF94ChargeProcessor	Assign MMFF94 Charges
BALL::VIEW::MMFF94ConfigurationDialog	Dialog for changing the options of the MMFF94 forcefield
BALL::MMFF94ESParameters	MMFF94 parameters for partial charges for electrostatics (see MMFFCHG.PAR MMFFPBCI.PAR)
BALL::MMFF94NonBonded	MMFF94 NonBonded (VdW + Electrostatic) component
BALL::MMFF94OutOfPlaneBend	MMFF94 Out of plane component
BALL::MMFF94ParametersBase	MMFF94 component parameters base class
BALL::MMFF94PlaneParameters	MMFF94 parameters for out of plane bending (see MMFFOOR.PAR)
BALL::MMFF94StretchBend	MMFF94 bond stretch component
BALL::MMFF94StretchBend::MMFF94StretchBend::Bend	See MMFFANG.PAR
BALL::MMFF94StretchBendParameters	MMFF94 parameters for stretch-bend interactions (see MMFFSTBN.PAR)
BALL::MMFF94StretchParameters	MMFF94 parameters for bond stretching (see MMFFBOND.PAR)
BALL::MMFF94Torsion	MMFF94 bond stretch component
BALL::MMFF94Torsion::MMFF94Torsion::Torsion	See MMFFTOR.PAR
BALL::MMFF94TorsionParameters	MMFF94 parameters for torsions (see MMFFTOR.PAR)
BALL::MMFF94VDWParameters	MMFF94 parameters for VDW (see MMFFVDW.PAR)
BALL::VIEW::ModelInformation	ModelInformation class
BALL::VIEW::ModelProcessor	Base class for all model processors
BALL::VIEW::ModelSettingsDialog	Dialog for the molecular model settings, it is inserted into the Preferences
BALL::VIEW::ModifyRepresentationDialog	Dialog for coloring of surfaces The surfaces can be colored by a given color, or from the values, contained in a RegularData3D grid
BALL::VIEW::ModularWidget	ModularWidget is a base class for widely independent widget that realize one feature domain
BALL::MOL2File	SYBYL MOL2 file class
BALL::MOL2File::MOL2File::SetStruct	A class used for storing TRIPOS sets
BALL::VIEW::MolecularControl	MolecularControl is a widget to display the molecular structure of Composite objects
BALL::MolecularDynamics	Molecular Dynamics base class
BALL::MolecularDynamics::MolecularDynamics::Option	Local classes for option names and default option values for all MD(sub)classes
BALL::VIEW::MolecularDynamicsDialog	Dialog for performing MD simulations
BALL::VIEW::MolecularFileDialog	Dialog for opening molecular data files
BALL::MolecularInformation	MolecularInformation class
BALL::VIEW::MolecularStructure	MolecularStructure provides means to modify molecular structures and do several calculations
BALL::VIEW::MolecularTaskMessage	Message to perform specific tasks for molecular items
BALL::MolecularWeight	This descriptor calculates the molecular weight
BALL::Molecule	Molecule class
BALL::MoleculeAssembler	Class, providing methods for the assembly of a structure diagram
BALL::MoleculeIteratorTraits	MoleculeIteratorTratis_
BALL::MoleculeObjectCreator	MoleculeObjectCreator class
BALL::MoleculePredicate	Predicate for matching molecules
BALL::MOLFile	MDL MOL file class
BALL::MOLFile::MOLFile::Property	String constants used for named properties
BALL::MolFileFactory	This class offers a factory method that given a path to a molecule file determines the file type based on the file extension and returns a pointer to an appropriate subclass of GenericMolFile
BALL::VIEW::MultiColorExtension	Base class for geometric objects that need multiple colors
BALL::VIEW::MultiLine	A line with multiple vertices and colors
BALL::MutableConstant< DataType >	Constant function class
BALL::MutablePower< Function, DataType >	MutablePower class
BALL::NamedProperty	Named Property Class
BALL::NegativePolarVdWSurface	This descriptor calculates the sum of atomic SAS van der Waals surface areas of the molecule, where the partial charge of the atom is negative and the atom is a polar atom
BALL::NegativeVdWSurface	This descriptor calculates the sum of atomic SAS van der Waals surface areas of the molecule, where the atoms have a negative partial charge
BALL::VIEW::NetworkPreferences	NeworkPreferences is a widget that will be inserted into the tab dialog Preferences
BALL::VIEW::NewSelectionMessage	Send by MainControl to Control objects to sync selection
BALL::NMRAtomData	Name Data classes and structures
BALL::NMRStarFile	NMRStarFile
BALL::Exception::NoBufferAvailable	RenderTarget error A buffer was requested from RenderTarget but could not be supplied for some reason at the given moment
BALL::NodeItem< Node, Edge >	The node type in a molecular graph
BALL::NonpolarSolvation	SLICK nonpolar solvation component
BALL::NotificationTarget< NotificationSource >	Notification Target Class
BALL::Exception::NotImplemented	Not implemented exception
BALL::NucleicAcid	Nucleic acid class
BALL::NucleicAcidIteratorTraits	NucleicAcidIteratorTraits
BALL::Nucleotide	Nucleotide class
BALL::NucleotideIteratorTraits	NucleotideIteratorTraits
BALL::NucleotidePredicate	Predicate indicating nucleotide atoms
BALL::Exception::NullPointer	Null pointer argument is invalid
BALL::NumberOfAromaticAtoms	This descriptor counts the number of aromatic atoms, a atom is aromatic if it participates a aromatic bond
BALL::NumberOfAromaticBonds	This descriptor counts the number of aromatic bonds
BALL::NumberOfAtoms	This descriptor counts the number of aromatic atoms
BALL::NumberOfBonds	This descriptor counts the number of bonds of the molecule
BALL::NumberOfBondsPredicate	Predicate class for atoms bearing a certain number of bonds
BALL::NumberOfBoron	This descriptor counts the number of boron
BALL::NumberOfBromine	This descriptor counts the number of bromine
BALL::NumberOfCarbon	This descriptor counts the number of carbon
BALL::NumberOfChlorine	This descriptor counts the number of chlorine
BALL::NumberOfDoubleBonds	This descriptor counts the number of double bonds of the molecule
BALL::NumberOfFlourine	This descriptor counts the number of flourine
BALL::NumberOfHeavyAtoms	This descriptor counts the heavy atoms, heavy atoms are atoms with an atomic number strictly greater than 1 (all but hydrgen)
BALL::NumberOfHeavyBonds	This descriptor counts the number of heavy bonds, a bond is heavy if both participating atoms are heavy
BALL::NumberOfHydrogen	This descriptor counts the number of hydrogen
BALL::NumberOfHydrogenBondAcceptors	This descriptor returns the number of hydrogen bonds acceptor atoms
BALL::NumberOfHydrogenBondDonors	This descriptor returns the number of the hydrogen bond donors of the molecule
BALL::NumberOfHydrophobicAtoms	This descriptor return the number of hydrophobic atoms
BALL::NumberOfIodine	This descriptor counts the number of iodine
BALL::NumberOfNitrogen	This descriptor counts the number of nitrogen
BALL::NumberOfOxygen	This descriptor counts the number of oxygen
BALL::NumberOfPhosphorus	This descriptor counts the number of phosphorus
BALL::NumberOfRotatableBonds	This descriptor counts the number of rotatable bonds, a bond ia rotatble if it is heavy, not in a ring and not bounds lone atoms like halogens
BALL::NumberOfRotatableSingleBonds	This descriptor counts the number of single bonds which are rotatable
BALL::NumberOfSingleBonds	This descriptor counts the number of single bonds of the molecule
BALL::NumberOfSulfur	This descriptor counts the number of sulfur
BALL::NumberOfTripleBonds	This descriptor counts the number of triple bonds of the molecule
BALL::NumericalIntegrator< Function, DataType >	Numerical integrator class
BALL::NumericalSAS::NumericalSAS::Default	Default values for NumericalSAS options
BALL::NumericalSAS::NumericalSAS::Option	Option names
BALL::Object	Generic object class
BALL::ObjectCreator	ObjectCreator class
BALL::VIEW::OccupancyColorProcessor	Coloring by the occupancy of atoms from a PDBFile
BALL::VIEW::OpenBruker1DFile	Interface to select and open spectra stored in the bruker file format
BALL::VIEW::OpenBruker2DFile	Interface to select and open spectra stored in the bruker file format
BALL::Options	Options class
BALL::Exception::OutOfGrid	Out of grid error
BALL::Exception::OutOfMemory	Out of memory
BALL::Exception::OutOfRange	Out of range
BALL::Pair6_12InteractionEnergyProcessor	Processor for the computation of the van-der-Waals interaction energy of a molecule with its surrounding
BALL::Pair6_12InteractionEnergyProcessor::Pair6_12InteractionEnergyProcessor::Default	Default values for interaction energy calculations
BALL::Pair6_12InteractionEnergyProcessor::Pair6_12InteractionEnergyProcessor::Option	Symbolic names for option keys
BALL::Pair6_12RDFIntegrator	6-12 pair potential integrator
BALL::Pair6_12RDFIntegrator::Pair6_12RDFIntegrator::Option	Symbolic names for option keys
BALL::PairExpInteractionEnergyProcessor	Processor for the computation of the van-derWaals interaction energy of a molecule
BALL::PairExpInteractionEnergyProcessor::PairExpInteractionEnergyProcessor::Default	Default values for interaction energy calculations
BALL::PairExpInteractionEnergyProcessor::PairExpInteractionEnergyProcessor::Option	Symbolic names for option keys
BALL::PairExpRDFIntegrator	6-exp pair potential integrator
BALL::PairExpRDFIntegrator::PairExpRDFIntegrator::Option	Symbolic names for option keys
BALL::Parameters	General Parameter class
BALL::ParameterSection	General Parameter Section Class
BALL::ParsedFunction< arg >	ParsedFunction
BALL::VIEW::ParsedFunctionDialog	Dialog to visualise a parsed function
BALL::Exception::ParseError	Parse Error
BALL::PartialChargeBase	Generic QSAR molecular partial charge descriptor class \
BALL::PartialChargeProcessor	Generic
BALL::Path	Data path management class
BALL::PCMCavFreeEnergyProcessor	Processor for the computation of the cavitation free energy
BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Default	Default values for cavitation free energy calculations
BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Option	Symbolic names for option keys
BALL::PDBAtom	Atom class with additional attributes
BALL::PDBAtomIteratorTraits	Traits class for the PDBAtomIterator
BALL::PDBFile	PDB file class
BALL::PDBFile::PDBFile::Default	Default values for PDBFile options
BALL::PDBFile::PDBFile::Option	Symbolic names for option keys
BALL::PDBInfo	PDB information class
BALL::PDBRecords	PDB record class
BALL::Peak< PositionType >	Generic Peak Class
BALL::PeakList< PT >	A generic peak list for spectra of arbitrary dimension
BALL::Peptides::PeptideBuilder	Build a Peptide from a sequence and the corresponing angles
BALL::VIEW::PeptideDialog	Dialog for building peptides
BALL::PeriodicBoundary	Periodic boundary class for force field simulations
BALL::PeriodicBoundary::PeriodicBoundary::Default	Default values
BALL::PersistenceManager	Persistence manager class
BALL::PersistentObject	The persistent object
BALL::PiecewiseFunction	Piecewise function object
BALL::PiecewisePolynomial	Piecewise polynomial curve object
BALL::PierottiCavFreeEnergyProcessor	Processor for the computation of the cavitation free energy
BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Default	Default values for cavitation free anergy calculations
BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Option	Symbolic names for option keys
BALL::VIEW::PluginDialog	Dialog for handling the BALLView plugins
BALL::PluginHandler	A PluginHandler is a class that is responsible for initializing a certain plugin type
BALL::PluginManager	A singleton that takes care of handling all plugins
BALL::VIEW::Point	Point class
BALL::PolarSolvation	SLICK polar solvation component \ { Definition:} {BALL/SCORING/COMPONENTS/polarSolvation.h}
BALL::PolarVdWSurface	This descriptor calculates the sum of atomic SAS van der Waals surface areas of the molecule, of the polar atoms
BALL::PositivePolarVdWSurface	This descriptor calculates the sum of atomic SAS van der Waals surface areas of the molecule, where the partial charge of the atom is positive and the atom is a polar atom
BALL::PositiveVdWSurface	This descriptor calculates the sum of atomic SAS van der Waals surface areas of the molecule, where the atoms have a positive partial charge
BALL::Exception::Postcondition	Postcondition failed
BALL::Potential1210	Potential1210
BALL::VIEW::POVRenderer	POVRenderer class
BALL::PreciseTime	Time class
BALL::Exception::Precondition	Precondition failed
BALL::VIEW::Preferences	Preferences is a dialog for other preference pages to be inserted
BALL::VIEW::PreferencesEntry	Base class for a dialog or a Preferences page
BALL::VIEW::PreferencesEntry::PreferencesEntry::ExtendedPreferencesObject	Base class for the more sophisticated GUI elements in a dialog, to support reading and (re)storing their state
BALL::PreferencesObject	Base class for objects that can store settings in an INIFile
BALL::PrincipalMomentOfInertia	This descriptor returns the principle moment of inertia calculated from the filed coordinates!
BALL::PrincipalMomentOfInertiaX	This descripor adds up the x-axis component of the principal moment of inertia over all atoms, calculated from the filed coordinates!
BALL::PrincipalMomentOfInertiaY	This descriptor adds up the y-axis component of the principal moment of inertia over all atoms, calculated from the filed coordinates!
BALL::PrincipalMomentOfInertiaZ	This descriptor adds up the z-axis component of the principal moment of interia over all atoms, calculated from the filed coordinates!
BALL::Processor	Global Types and Enums for Processors
BALL::Product< First, Second, DataType >	Multiplication class
BALL::PropertyManager	Property Manager class
BALL::Protein	Protein Class
BALL::ProteinIteratorTraits	ProteinIteratorTraits
BALL::ProteinPredicate	Predicate for matching proteins
BALL::PTE_	Periodic Table of Elements Class
BALL::VIEW::PTEDialog	Dialog for choosing the element type for the edit mode of scene
BALL::VIEW::PubChemDialog	Dialog for querying PubChem and generating structures from a SMILES string
BALL::PyColorRGBAVector	Equivalent for a STL::vector of ColorRGBA in Python
BALL::PyCompositeList	Equivalent for a STL::List of Composite Pointers in Python
BALL::PyDatasetVector	Equivalent for a STL::Vector of Dataset Pointers in Python
BALL::PyIndexList	Equivalent for an STL::List of numbers/indices in Python
BALL::PyInterpreter	Embedded Python interpreter
BALL::VIEW::PythonHighlighter	Class for syntax highlighting of Python code
BALL::VIEW::PythonSettings	Dialog for setting the Python preferences
BALL::VIEW::PyWidget	Python Widget This class is a Window for a Python interpreter interface
BALL::VIEW::QColorTable	Class for storing colors in a GUI table
BALL::VIEW::QuadMesh	QuadMesh class
BALL::QuadraticAngleBend	QuadraticAngleBend
BALL::QuadraticBondStretch	QuadraticBondStretch
BALL::QuadraticImproperTorsion	QuadraticImproperTorsion
BALL::Quadruple< T1, T2, T3, T4 >	Quadruple Class
BALL::RadialDistributionFunction	Radial distribution function
BALL::RadiusRuleProcessor	Radius Rule Processor
BALL::RandomAccessIterator< Container, DataType, Position, Traits >	Random Access Iterator Class
BALL::RandomCoilShiftProcessor	Random coil shift assignment processor
BALL::RandomEvaluation	A basis class for energetic evaluators of docking results
BALL::RandomNumberGenerator	The following code is taken (and adapted to BALL's C++ interface) from the code provided at
BALL::VIEW::RaytraceableContourSurfaceDialog	Dialog for selecting contour urface thresholds for the raytracing mode of scene
BALL::VIEW::RaytraceableGridController	Controller class for RaytraceableGrid
BALL::RDFIntegrator	Integrator class for radial distribution functions
BALL::RDFParameter	Parametersection for radial distribution function ?????
BALL::RDFSection	Helper class for RDFParameter
BALL::Reciprocal< Function, DataType >	Reciprocal class
BALL::ReconstructFragmentProcessor	ReconstructFragmentProcessor
BALL::ReducedSurface	Generic ReducedSurface Class
BALL::VIEW::RegisterHelpSystemMessage	Register a QObject to a URL in the documentation This message is send by ModularWidget::registerForHelpSystem and should probably not be used otherwise
BALL::VIEW::RegularData1DWidget	Widget used to display one-dimensional data
BALL::VIEW::RegularData2DWidget	Widget used to display two-dimensional data
BALL::VIEW::RegularData3DController	Controller base class for one type of Dataset
BALL::RegularExpression	Regular expression class
BALL::ReissCavFreeEnergyProcessor	Processor for the computation of the cavitation free energy
BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Default	Default values for cavitation free anergy calculations
BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Option	Symbolic names for option keys
BALL::RelHydrophobicVdWSurface	This descriptor returns the fraction of the atomic SAS van der Waals surface, where the atoms are hydrophobic
BALL::RelNegativePartialCharge	This descriptor returns the fraction of negative partial charges, which is calculated by deviding the most negative partial charge value by the sum of negative partial charges
BALL::RelNegativePolarVdWSurface	This descriptor returns the fraction of the atomic SAS van der Waals surface, where the partial charge is negative and the atoms are polar
BALL::RelNegativeVdWSurface	This descriptor returns the fraction of the atomic SAS van der Waals surface, where the partial charge is negative
BALL::RelNumberOfRotatableBonds	This descriptor returns the fraction of rotatble bonds
BALL::RelNumberOfRotatableSingleBonds	This descriptor counts the fraction of the rotatble single bonds
BALL::RelPolarVdWSurface	This descriptor returns the fraction of the atomic SAS van der Waals surface, where the atoms are polar
BALL::RelPositivePartialCharge	This descriptor returns the fraction of positive partial charges, which is calculated by deviding the biggest partial charges value by the sum of positive partial charges
BALL::RelPositivePolarVdWSurface	This descriptor returns the fraction of the atomic SAS van der Waals surface, where the partial charge is positive and the atoms are polar
BALL::RelPositiveVdWSurface	This descriptor returns the fraction of the atomic SAS van der Waals surface, where the partial charge is positive
BALL::VIEW::Renderer	Renderer is just a generic base class
BALL::VIEW::RenderSetup	This class encapsulates a (renderer, target) pair for Scene
BALL::VIEW::RenderWindow< taPixelDatatype >	General rendering window interface
BALL::VIEW::Representation	Representation A Representation is a collection of geometric objects for a group of composites and a given model, for example a surface
BALL::VIEW::RepresentationManager	RepresentationManager manages the graphical Representation objects and all GeometricObject
BALL::VIEW::RepresentationMessage	Base class for all messages concerning a Representation
BALL::Residue	Residue class
BALL::ResidueChecker	Residue Consistency Checker
BALL::ResidueIDPredicate	Predicate for matching residues IDs
BALL::ResidueIteratorTraits	ResidueIteratorTraits
BALL::VIEW::ResidueNameColorProcessor	ResidueNameColorProcessor is derived from the class ColorProcessor
BALL::VIEW::ResidueNumberColorProcessor	ColorProcessor for coloring by the numbers of the Residue 's
BALL::ResiduePredicate	Predicate for matching residues
BALL::ResidueRotamerSet	Residue Rotamer Set
BALL::ResidueTorsions	Parameter class containing all proper torsions occuring in a residue
BALL::ResidueTorsions::ResidueTorsions::Data	Strcuture containing the names of the residue and the atoms for a torsion
BALL::VIEW::ResidueTypeColorProcessor	Coloring by the type of a Residue
BALL::VIEW::Resolution	Stores a resolution consisting of width and height
BALL::ResourceEntry	Resource entry class
BALL::ResourceFile	Resource file class
BALL::RingAnalyser	Class, providing methods for the analysis of the structure of ringsystems
BALL::RingClusterer	Class, providing a method for agglomerative clustering of single rings to ringsystems
BALL::RingFinder	Helper class for all predicates that need ring information
BALL::RingPerceptionProcessor	Processor, which marks all atoms and bonds in a ring structure with the Composite Property "InRing"
BALL::RingPerceptionProcessor::RingPerceptionProcessor::Default	Default options for the ring perception
BALL::RingPerceptionProcessor::RingPerceptionProcessor::Option	Option names
BALL::RMSDMinimizer	RMSD minimizer class
BALL::RombergIntegrator< Function, DataType >	A numerical integration of a BALL-Function using a Romberg integration scheme
BALL::Rotamer	Rotamer class
BALL::RotamerLibrary	Rotamer Library Class
BALL::RotationalEntropyLoss	SLICK rotational entropy loss contrbution { Definition:} {BALL/SCORING/COMPONENTS/rotationalEntropyLoss.h}
BALL::RotationalEntropyLoss::RotationalEntropyLoss::Default	Default values for SLICK options
BALL::RotationalEntropyLoss::RotationalEntropyLoss::Option	Option names
BALL::RSComputer	Generic RSComputer Class
BALL::RSConstructor	Class, performing the prefabication of ringsystems (i.e
BALL::RSEdge	Generic RSEdge Class
BALL::RSFace	Generic RSFace Class
BALL::RSVertex	Generic RSVertex Class
BALL::RuleEvaluator	Rule evaluator class
BALL::RuleProcessor	Rule Processor class
BALL::SampleCondition	SampleConditions
BALL::SASEdge	Generic SASEdge Class
BALL::SASFace	Generic SASFace Class
BALL::SASTriangulator	Generic SASTriangulator Class
BALL::SASVertex	Generic SASVertex Class
BALL::VIEW::Scene	Scene is the main visualization widget that shows the graphical Representation 's
BALL::VIEW::SceneMessage	SceneMessage is the message class that is responsible for changing the content of the Scene
BALL::ScoringBaseFunction	Define the interface for the base function
BALL::ScoringTypes	Define the interface for the base function
BALL::SCWRLRotamerFile	Reads Dunbrack/SCWRL rotamer library files
BALL::SDFile	MDL SD file class
BALL::SDGenerator	The main class, provides methods for analysis of the input
BALL::SDGenerator::SDGenerator::Default	Default values for options
BALL::SDGenerator::SDGenerator::Option	Option names
BALL::VIEW::SDWidget::SDWidget::Default	Default values for options
BALL::VIEW::SDWidget::SDWidget::Option	Option names
BALL::SecondaryStructure	Secondary structure class
BALL::VIEW::SecondaryStructureColorProcessor	Coloring by the secondary structure, a Composite is in
BALL::SecondaryStructureIteratorTraits	SecondaryStructureIteratorTraits
BALL::SecondaryStructurePredicate	Predicate for matching secondary structures
BALL::SecondaryStructureProcessor	Secondary structure extraction from 3D structure
BALL::Selectable	Selectable Concept
BALL::SelectedPredicate	Selection predicate
BALL::Selector	Atom Selection from BALL Expression
BALL::VIEW::ServerPreferences	Preferences tab for the Server
BALL::VIEW::ServerWidget	ServerWidget class
BALL::VIEW::ServerWidget::ServerWidget::BALLViewServer	BALLView server thread
BALL::VIEW::ServerWidget::ServerWidget::NotCompositeObject	NotCompositeObject Exception class
BALL::SESComputer	Generic SESComputer Class
BALL::SESEdge	Generic SESEdge Class
BALL::SESFace	Generic SESFace Class
BALL::SESSingularityCleaner	Generic SESComputer Class
BALL::SESTriangulator	Generic SESTriangulator Class
BALL::SESVertex	Generic SESVertex Class
BALL::VIEW::SetCamera	Dialog to set the camera to a given value
BALL::VIEW::SetClippingPlane	Dialog to set a clipping plane to a given value
BALL::ShiftedLVMMMinimizer	Shifted limited-memory variable metric methods minimizer
BALL::ShiftedLVMMMinimizer::ShiftedLVMMMinimizer::Option	Symbolic names for option keys
BALL::ShiftModel	A class representing a complete parameterized NMR shift model
BALL::ShiftModule	A single contribution of a NMR shift model
BALL::ShiftReferenceElement	ShiftReferenceElement
BALL::ShiftReferenceSet	ShiftReferenceSet
BALL::VIEW::ShortcutDialog	Dialog for changing the BALLView shortcuts
BALL::VIEW::ShortcutRegistry	ShortcutRegistry
BALL::VIEW::ShowDisplayPropertiesMessage	Notify the DisplayProperties dialog to show itself
BALL::SimpleBase	QSAR molecular simple descriptors base class, this class implements some methods to calculate simple descriptors
BALL::VIEW::SimpleBox	SimpleBox class
BALL::SimpleExperiment1D	Simple 1D NMR experiment class
BALL::VIEW::SimulationThread	Baseclass for threads, which perform a simulation
BALL::SingleBondsPredicate	Predicate class for atoms bearing single bonds
BALL::SizeOfSSSR	This descriptor returns the number of rings in the SSSR
BALL::Exception::SizeUnderflow	Size underflow
BALL::SLICKEnergy	SLICKEnergy scoring function { Definition:} {BALL/SCORING/FUNCTIONS/slickEnergy.h}
BALL::SLICKEnergy::SLICKEnergy::Default	Default values for SLICKEnergy options
BALL::SLICKEnergy::SLICKEnergy::Option	Option names
BALL::SLICKScore	SLICKEnergy scoring function { Definition:} {BALL/SCORING/FUNCTIONS/slickScore.h}
BALL::SLICKScore::SLICKScore::Default	Default values for SLICKEnergy options
BALL::SLICKScore::SLICKScore::Option	Option names
BALL::SmartsMatcher::SmartsMatcher::RecStruct_	Wrapper class which is used as an interface in the matching code to the pool
BALL::SmartsMatcher::SmartsMatcher::RecStructCore_	Core structure of the recursive matching algorithm for the object pool
BALL::SmartsMatcher::SmartsMatcher::RecStructPool_	Class which does the pool operations of the RecStructCore_ pool
BALL::SmartsParser	SMARTS Parser
BALL::SmartsParser::SmartsParser::SPAtom	Smarts Parser Atom class
BALL::SmartsParser::SmartsParser::SPAtom::SmartsParser::SPAtom::Property	Property struct of smarts parser atom
BALL::SmartsParser::SmartsParser::SPAtom::SmartsParser::SPAtom::PropertyValue	Possible types of the properties
BALL::SmartsParser::SmartsParser::SPBond	Bond representation of the smarts parser
BALL::SmartsParser::SmartsParser::SPEdge	Edge representation of the smarts parser graph
BALL::SmartsParser::SmartsParser::SPNode	Representation of a node in the smarts parser graph
BALL::SmartsParser::SmartsParser::State	Parser state (used by the parser itself)
BALL::SMARTSPredicate	Predicate for using smarts
BALL::SnapShot	SnapShot class, containing the actual data of one single snapshot
BALL::SnapShotManager	Snapshot management e.g
BALL::SnapShotManager::SnapShotManager::Default	Local class for handling default values for the options
BALL::SnapShotManager::SnapShotManager::Option	Local class for handling options
BALL::VIEW::SnapshotVisualisationDialog	Dialog to visualise SnapShot instances
BALL::SolventAccessibleSurface	Generic SolventAccessibleSurface Class
BALL::SolventAtomDescriptor	This struct contains the information for one atom type of the solvent
BALL::SolventDescriptor	Solvent Description
BALL::SolventExcludedSurface	Generic SolventExcludedSurface Class
BALL::SolventParameter	Parameter section for the solvent description
BALL::SolventPredicate	Predicate indicating solvent atoms
BALL::Sp2HybridizedPredicate	Predicate indicating sp2 hybridized atoms
BALL::Sp3HybridizedPredicate	Predicate indicating sp3 hybridized atoms
BALL::Spectrum< DataT, PeakT, PositionT >	A generic NMR spectrum class
BALL::VIEW::Sphere	Sphere class
BALL::SpHybridizedPredicate	Predicate indicating sp hybridized atoms
BALL::SquareFunction< Function, DataType >	SquareFunction class
BALL::VIEW::Stage	A Stage has a Camera, LightSources and a background color
BALL::VIEW::Stage::Stage::RaytracingMaterial	This class holds all material parameters passed on to a raytracer
BALL::VIEW::StageSettings	Dialog for the Stage setup
BALL::SteepestDescentMinimizer	A minimizer for geometry optimization based on steepest descent steps
BALL::VIEW::StereoSettingsDialog	Dialog to set the focal plane to a given value
BALL::VIEW::STLRenderer	STLRenderer class
BALL::StrangLBFGSMinimizer	Limited-memory BFGS minimizer based on the Strang recurrence
BALL::StrangLBFGSMinimizer::StrangLBFGSMinimizer::Option	Symbolic names for option keys
BALL::String	Extended String class
BALL::StringHashMap< Value >	StringHashMap
BALL::StructureMapper	Structure mapping class
BALL::Substring	A substring class
BALL::Substring::Substring::InvalidSubstring	Exception thrown if an invalid substring is accessed
BALL::Substring::Substring::UnboundSubstring	Exception thrown if an unbound substring is accessed
BALL::Subtraction< First, Second, DataType >	Subtraction class
BALL::SurfaceBase	Generic QSAR molecular surface descriptors class \
BALL::SurfaceProcessor	SurfaceProcessor
BALL::System	System class
BALL::TAngle< T >	Generic Angle Class
BALL::TBox3< T >	Generic three-dimensional Box
BALL::TCircle3< T >	Generic Circle in Three-Dimensional Space
BALL::TContour< T >	This class is intended to create and store ContourLines belonging to the same data-set
BALL::TContourLine< T >	This class is intended to store a single contour line generated from a RegularData2D - class
BALL::TContourSurface< T >	This class contains a contour surface
BALL::TContourSurface< T >::TContourSurface::Cube	A cube in the grid
BALL::TCPIOStream	This class provides a very thin layer around the asio (or boost::asio, depending on your setup) functions for handling asynchronous io
BALL::TCPServer	This class provides a base for very simple TCP-based servers
BALL::TCPServerThread	This class provides a simple TCP Server running in its own QThread
BALL::TCPTransfer	Class for TCPTransfers
BALL::TCPTransfer::TCPTransfer::TransferFailed	TransferFailed exception
BALL::VIEW::TemperatureFactorColorProcessor	Coloring by the temperature factor of atoms from a PDBFile
BALL::Templates	Force Field Residue Template Class
BALL::VIEW::TestFramework	Class for recording mouse and keyboard inputs, storing them in a line based file and replaying them
BALL::TextPersistenceManager	Text-format-based persistence manager
BALL::TFFT1D< ComplexTraits >	A class to perform Fast Fourier Transforms and inverse Fast Fourier Transforms on regularly spaced one dimensional data
BALL::TFFT2D< ComplexTraits >	A class to perform Fast Fourier Transforms and inverse Fast Fourier Transforms on regularly spaced two dimensional data
BALL::TFFT3D< ComplexTraits >	A class to perform Fast Fourier Transforms and inverse Fast Fourier Transforms on regularly spaced three dimensional data
BALL::VIEW::TilingRenderer	Offscreen rendering with arbitrary resolution
BALL::Timer	Timer Class
BALL::TimeStamp	Time stamp concept
BALL::TLine3< T >	Generic Line in Three-Dimensional Space
BALL::TMatrix4x4< T >	Generic 4x4 Matrix Class
BALL::TMutex< MutexType >	This class provides a very thin wrapper around different mutex types
BALL::TMutexLocker< MutexLockerType, MutexType >	This class provides a very thin wrapper around different mutex locker types
BALL::Exception::TooManyBonds	Exception to be thrown if too many bonds for one atom
BALL::Exception::TooManyErrors	Exception to be thrown if too many errors occur, e.g. in ForceField
BALL::TotalNegativePartialCharge	This descriptor adds up all negative partial charges over all atoms
BALL::TotalPositivePartialCharge	This descriptor adds up all positive partial charges over all atoms
BALL::TPlane3< T >	Threedimensional plane
BALL::TQuaternion< T >	Generic Quaternion Class
BALL::VIEW::TrajectoryController	Controller base class for one type of Dataset
BALL::TrajectoryFile	Trajectory file format for MD simulation
BALL::TransformationManager	This class handles automatic file transformation methods
BALL::TransformationProcessor	Transformation applicator
BALL::TranslationProcessor	Translation processor
BALL::TReadLocker< ReadLockerType, ReadWriteLockType >	This class provides a very thin wrapper around different mutex read-locker types
BALL::TReadWriteLock< ReadWriteLockType >	This class provides a very thin wrapper around different read-write mutex types
BALL::VIEW::TreeWidget	Base class for all control widgets
BALL::TRegularData1D< ValueType >	A class to store regularaly spaced data
BALL::TRegularData1D< ValueType >::TRegularData1D::BlockValueType	The block data type for reading and writing binary data
BALL::TRegularData2D< ValueType >	Two-dimensional grid class
BALL::TRegularData2D< ValueType >::TRegularData2D::BlockValueType	The block data type for reading and writing binary data
BALL::TRegularData2D< ValueType >::TRegularData2D::IndexType	The index type used to refer to a specific element in the grid (x-, and y-index)
BALL::TRegularData3D< ValueType >	Three-dimensional grid class
BALL::TRegularData3D< ValueType >::TRegularData3D::BlockValueType	The block data type for reading and writing binary data
BALL::TRegularData3D< ValueType >::TRegularData3D::IndexType	The index type used to refer to a specific element in the grid (x-, y-, and z-index)
BALL::Triangle	Generic TriangleEdge Class
BALL::TriangleEdge	Generic TriangleEdge Class
BALL::TrianglePoint	Generic TriangleEdge Class
BALL::TriangulatedSAS	Generic TriangulatedSAS Class
BALL::TriangulatedSES	Generic TriangulatedSES Class
BALL::TriangulatedSphere	Generic TriangulatedSphere Class
BALL::TriangulatedSurface	Generic TriangulatedSurface Class
BALL::Triple< T1, T2, T3 >	Triple Class
BALL::TripleBondsPredicate	Predicate class for atoms bearing triple bonds
BALL::TRRFile	TRR Trajectory file format
BALL::TRRFile::TRRFile::TRRHeader	The header for each coordinate set stored in the TRR file
BALL::TruePredicate	Default predicate
BALL::TSimpleBox3< T >	Generic three-dimensional Box
BALL::TSphere3< T >	Generic Sphere Class
BALL::TSurface< T >	Generic Three-dimensional Surface class
BALL::VIEW::Tube	Tube class
BALL::TVector2< T >	Generic Two-Dimensional Vector
BALL::TVector3< T >	Generic Three-Dimensional Vector
BALL::TVector4< T >	Generic Four-Dimensional Vector
BALL::VIEW::TwoColoredLine	TwoColoredLine class
BALL::VIEW::TwoColoredTube	TwoColoredTube class
BALL::TWriteLocker< WriteLockerType, ReadWriteLockType >	This class provides a very thin wrapper around different mutex write-locker types
BALL::TypenameRuleProcessor	Typename Rule Processor
BALL::TypeRuleProcessor	Type Rule Processor
BALL::UCK	Unique Chemical Key
BALL::UhligCavFreeEnergyProcessor	Processor for the computation of the cavitation free energy
BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Default	Default values for cavitation free energy calculations
BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Option	Symbolic names for option keys
BALL::UnaryFunctor< ArgumentType, ResultType >	Generic Unary Functor Class
BALL::UnaryPredicate< T >	Generic Unary Predicate Class
BALL::UnaryProcessor< T >	Generic Unary Processor Class
BALL::VanDerWaals	SLICK van-der-Waals Component based on AmberNonBonded \ { Definition:} {BALL/SCORING/COMPONENTS/vanDerWaals.h}
BALL::VdWSurface	This descriptor calculates the van der Waals surface area of the molecule
BALL::VdWVolume	This descriptor calculates the van der Waals volume of the molecule
BALL::VIEW::VectorGridController	Controller class for VectorGrid
BALL::VersionInfo	Version information class
BALL::VIEW::Vertex	Vertex is a base class for all GeometricObject 's that have a single vertex
BALL::VIEW::Vertex2	Vertex2 is a base class for all GeometricObject 's that have two vertices
BALL::VertexAdjacency	The vertex adjacency is calculated using the formula \( 1 + m \), where $m$ is the number of heavy bonds
BALL::VertexAdjacencyEquality	The vertex adjacency equality si calculateed using the formula: \(-(1-f) (1-f) - f f \), where $f$ is defined as: \( f = {(n^2 -2m)}{n^2}\), where $n$ is the number of heavy atoms and $m$ is the number of heavy bonds
BALL::Visitor< Host >	Generic Visitor Class
BALL::VIEW::VRMLRenderer	VRMLRenderer class
BALL::XDRPersistenceManager	XDR-format-based persistence manager
BALL::XYZFile	XYZ file class
BALL::ZagrebIndex	This descriptor returns the Zagreb Index, which is calculated as: $ d_i^2$, over all heavy atoms