Here is a list of all documented class members with links to the class documentation for each member:

- a -

• a : BALL::TSimpleBox3< T >
• a0 : BALL::Constant
• a1 : BALL::HybridisationProcessor::HybridisationProcessor::AtomNames_
• a2 : BALL::HybridisationProcessor::HybridisationProcessor::AtomNames_
• a3 : BALL::HybridisationProcessor::HybridisationProcessor::AtomNames_
• a_ : BALL::HBondShiftProcessor
• a_i_ : BALL::ConjugateGradientMinimizer
• ABORT : BALL::Processor
• abort() : BALL::TCPTransfer
• abortClicked() : BALL::VIEW::DockProgressDialog
• aboutToExit() : BALL::VIEW::MainControl
• ABSOLUTE_TEMPERATURE : BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Default , BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Option , BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Option , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Default
• accept() : BALL::VIEW::AtomOverview , BALL::VIEW::LabelDialog
• acceptor_list_ : BALL::HBondShiftProcessor
• activate() : BALL::VIEW::ServerWidget
• ACTIVE_STEREO : BALL::VIEW::GLRenderer
• ADD : BALL::VIEW::DatasetMessage , BALL::VIEW::RepresentationMessage
• add() : BALL::SmartsMatcher::SmartsMatcher::RecStruct_
• ADD_HYDROGENS : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• add_hydrogens : BALL::FragmentDB
• ADD_TO_GEOMETRIC_CONTROL : BALL::VIEW::RepresentationMessage
• ADD_VARIANT_EXTENSIONS : BALL::Residue
• addAlgorithm() : BALL::VIEW::DockDialog
• addAllRecords_() : BALL::PDBFile
• addAminoAcid() : BALL::Peptides::PeptideBuilder
• addAtom() : BALL::VIEW::AtomDistanceColorProcessor
• AddBackboneModel() : BALL::VIEW::AddBackboneModel
• AddBallAndStickModel() : BALL::VIEW::AddBallAndStickModel
• AddCartoonModel() : BALL::VIEW::AddCartoonModel
• addComponent() : BALL::ComposedEnergyProcessor
• addComposite() : BALL::VIEW::MolecularControl
• addDataPath() : BALL::Path
• addEdge() : BALL::SmartsParser
• addHydrogens() : BALL::VIEW::MolecularStructure
• Addition() : BALL::Addition< First, Second, DataType >
• addLightPressed() : BALL::VIEW::LightSettings
• addLightSource() : BALL::VIEW::Stage
• AddLineModel() : BALL::VIEW::AddLineModel
• addModularWidget() : BALL::VIEW::MainControl
• addMovable_() : BALL::ResidueRotamerSet
• addNode() : BALL::SmartsParser
• addPluginDirectory() : BALL::PluginManager
• addPropertiesFromSPAtom() : BALL::SmartsParser::SmartsParser::SPAtom
• addRecursiveEdge() : BALL::SmartsParser
• addRepresentation() : BALL::VIEW::GeometricControl
• addRingConnection() : BALL::SmartsParser
• addRotamer() : BALL::ResidueRotamerSet , BALL::RotamerLibrary
• addScoring() : BALL::DockResult
• addScoringFunction() : BALL::VIEW::DockDialog , BALL::VIEW::DockResultDialog
• addSolvent() : BALL::PeriodicBoundary
• addSPEdge() : BALL::SmartsParser::SmartsParser::SPNode
• AddSurfaceModel() : BALL::VIEW::AddSurfaceModel
• addToolBarEntries() : BALL::VIEW::ModularWidget , BALL::VIEW::EditableScene , BALL::VIEW::Scene
• AddVanDerWaalsModel() : BALL::VIEW::AddVanDerWaalsModel
• addVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
• advancedClicked() : BALL::VIEW::DockResultDialog
• advancedOptions() : BALL::VIEW::MinimizationDialog
• after() : BALL::String
• algAdvancedPressed() : BALL::VIEW::DockDialog
• ALGORITHM : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• Algorithm : BALL::VIEW::DockingController
• ALGORITHM_NAME : BALL::RingPerceptionProcessor::RingPerceptionProcessor::Option , BALL::RingPerceptionProcessor::RingPerceptionProcessor::Default
• algorithmChosen() : BALL::VIEW::DockDialog
• all_small_beers_ : BALL::RingPerceptionProcessor
• all_small_rings_ : BALL::RingPerceptionProcessor
• ALPHA : BALL::RegularExpression , BALL::PairExpInteractionEnergyProcessor::PairExpInteractionEnergyProcessor::Option , BALL::PairExpInteractionEnergyProcessor::PairExpInteractionEnergyProcessor::Default
• alpha_ : BALL::DSN6File
• ALPHANUMERIC : BALL::RegularExpression
• AmberBend() : BALL::AmberBend
• AmberConfigurationDialog() : BALL::VIEW::AmberConfigurationDialog
• AmberFF() : BALL::AmberFF
• AmberNonBonded() : BALL::AmberNonBonded
• AmberStretch() : BALL::AmberStretch
• AmberTorsion() : BALL::AmberTorsion
• AMBIENT : BALL::VIEW::LightSource
• AminoAcidDescriptor() : BALL::Peptides::AminoAcidDescriptor
• analyseRings() : BALL::RingAnalyser
• AND : BALL::ExpressionTree
• animateClicked() : BALL::VIEW::SnapshotVisualisationDialog
• AnisotropyShiftProcessor() : BALL::AnisotropyShiftProcessor
• ANY_TYPE : BALL::Atom
• append() : BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::DCDFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::AtomContainer , BALL::Chain , BALL::Molecule
• appendChild() : BALL::Composite , BALL::ExpressionTree
• appendHotkey() : BALL::VIEW::HotkeyTable
• appendLine() : BALL::INIFile
• appendSection() : BALL::INIFile
• apply() : BALL::Composite , BALL::HashSet< Key > , BALL::List< Value > , BALL::INIFile , BALL::PTE_ , BALL::ElectrostaticPotentialCalculator , BALL::AssignBondOrderProcessor , BALL::VIEW::DisplayProperties , BALL::VIEW::LightSettings , BALL::VIEW::MaterialSettings , BALL::VIEW::StageSettings
• apply_() : BALL::AssignBondOrderProcessor
• APPLY_FIRST_SOLUTION : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• applyAncestor() : BALL::Composite
• applyBonds() : BALL::Atom
• applyChild() : BALL::Composite
• applyDescendant() : BALL::Composite
• applyDescendantPostorder() : BALL::Composite
• applyDescendantPreorder() : BALL::Composite
• applyFirstSnapShot() : BALL::SnapShotManager
• applyInterBond() : BALL::AtomContainer
• applyIntraBond() : BALL::AtomContainer
• applyLastSnapShot() : BALL::SnapShotManager
• applyLevel() : BALL::Composite
• applyNextSnapShot() : BALL::SnapShotManager
• applyPostorder() : BALL::Composite
• applyPreferences() : BALL::VIEW::DisplayProperties , BALL::VIEW::Preferences , BALL::VIEW::ModularWidget , BALL::VIEW::ServerWidget , BALL::VIEW::EditableScene , BALL::VIEW::Scene , BALL::VIEW::PyWidget , BALL::VIEW::MainControl
• applyPreorder() : BALL::Composite
• applyProcessors_() : BALL::VIEW::DockDialog
• applySelector() : BALL::VIEW::MolecularControl
• applySnapShot() : BALL::SnapShot , BALL::SnapShotManager
• applyTo() : BALL::VIEW::AmberConfigurationDialog , BALL::VIEW::CharmmConfigurationDialog , BALL::VIEW::MMFF94ConfigurationDialog
• applyValues_() : BALL::VIEW::DockDialog
• argument : BALL::ExpressionParser::ExpressionParser::SyntaxTree
• arom : BALL::MMFF94AtomType
• AromaticityProcessor() : BALL::AromaticityProcessor
• aromatize() : BALL::AromaticityProcessor
• aromatizeSimple() : BALL::AromaticityProcessor
• ASP_SEPERATION : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• aspec : BALL::MMFF94AtomType
• assembleMolecule() : BALL::MoleculeAssembler
• assign() : BALL::Templates
• ASSIGN_CHARGES : BALL::CharmmFF::CharmmFF::Option , BALL::MMFF94::MMFF94::Default , BALL::MMFF94::MMFF94::Option , BALL::AmberFF::AmberFF::Option , BALL::AmberFF::AmberFF::Default , BALL::CharmmFF::CharmmFF::Default
• ASSIGN_TYPENAMES : BALL::CharmmFF::CharmmFF::Option , BALL::AmberFF::AmberFF::Default , BALL::CharmmFF::CharmmFF::Default , BALL::MMFF94::MMFF94::Default , BALL::AmberFF::AmberFF::Option , BALL::MMFF94::MMFF94::Option
• ASSIGN_TYPES : BALL::CharmmFF::CharmmFF::Option , BALL::AmberFF::AmberFF::Default , BALL::AmberFF::AmberFF::Option , BALL::MMFF94::MMFF94::Default , BALL::CharmmFF::CharmmFF::Default , BALL::MMFF94::MMFF94::Option
• assignBackboneAtoms() : BALL::AtomBijection
• AssignBondOrderConfigurationDialog() : BALL::VIEW::AssignBondOrderConfigurationDialog
• AssignBondOrderProcessor() : BALL::AssignBondOrderProcessor
• AssignBondOrderResultsDialog() : BALL::VIEW::AssignBondOrderResultsDialog
• assignByName() : BALL::AtomBijection
• assignCAlphaAtoms() : BALL::AtomBijection
• AssignChargeProcessor() : BALL::AssignChargeProcessor
• assignCharges() : BALL::Templates
• assignParameters() : BALL::CharmmEEF1 , BALL::CosineTorsion , BALL::Potential1210 , BALL::QuadraticAngleBend , BALL::QuadraticBondStretch , BALL::LennardJones , BALL::QuadraticImproperTorsion
• AssignRadiusProcessor() : BALL::AssignRadiusProcessor
• AssignShiftProcessor() : BALL::AssignShiftProcessor
• assignSpecificValues_() : BALL::AtomTyper
• assignTorsion() : BALL::ResidueTorsions
• assignTrivial() : BALL::AtomBijection
• assignTypeNames() : BALL::Templates
• Atom() : BALL::Atom
• atom : BALL::CharmmEEF1::CharmmEEF1::Data
• Atom() : BALL::Atom
• atom_ : BALL::SmartsParser::SmartsParser::SPAtom
• atom_array : BALL::FDPB
• atom_format_ : BALL::MOLFile
• ATOM_TYPE_FF_FILENAME : BALL::HybridisationProcessor::HybridisationProcessor::Option , BALL::HybridisationProcessor::HybridisationProcessor::Default
• atom_type_smarts_ : BALL::HybridisationProcessor
• ATOM_TYPE_SMARTS_FILENAME : BALL::HybridisationProcessor::HybridisationProcessor::Option , BALL::HybridisationProcessor::HybridisationProcessor::Default
• AtomBijection() : BALL::AtomBijection
• AtomBondModelBaseProcessor() : BALL::VIEW::AtomBondModelBaseProcessor
• AtomBox : BALL::VIEW::ColorProcessor
• AtomChargeColorProcessor() : BALL::VIEW::AtomChargeColorProcessor
• AtomContainer() : BALL::AtomContainer
• AtomDistanceColorProcessor() : BALL::VIEW::AtomDistanceColorProcessor
• AtomGrid : BALL::VIEW::ColorProcessor
• AtomicNumber : BALL::Element
• AtomicPolarizabilities() : BALL::AtomicPolarizabilities
• AtomInformationContent() : BALL::AtomInformationContent
• AtomOverview() : BALL::VIEW::AtomOverview
• AtomPair : BALL::AtomBijection
• AtomStatus : BALL::RSComputer
• AtomTypes() : BALL::AtomTypes
• AtomVector() : BALL::AtomVector
• attributes_changed_time_ : BALL::Atom
• AVERAGE_SECTION_NAME : BALL::CreateSpectrumProcessor
• AverageBondAngle_() : BALL::HybridisationProcessor
• AVERAGING__NONE : BALL::PolarSolvation
• AVERAGING__RANDOM : BALL::PolarSolvation
• AVERAGING__RANDOM_FACTOR : BALL::PolarSolvation
• AVERAGING__STATIC : BALL::PolarSolvation
• AveragingMethod : BALL::PolarSolvation
• AVOGADRO : BALL::Constant