Here is a list of all documented class members with links to the class documentation for each member:

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• Object() : BALL::Object
• OBJECT : BALL::NamedProperty
• OBJECT_HEADER : BALL::XDRPersistenceManager
• OBJECT_TRAILER : BALL::XDRPersistenceManager
• ObjectCreator() : BALL::ObjectCreator
• OFFSET : BALL::FDPB::FDPB::Option
• okPressed() : BALL::VIEW::DockDialog
• old_energy_ : BALL::EnergyMinimizer
• old_grad_ : BALL::EnergyMinimizer
• old_gtg_ : BALL::ConjugateGradientMinimizer
• oneBackwardClicked() : BALL::VIEW::SnapshotVisualisationDialog
• oneForwardClicked() : BALL::VIEW::SnapshotVisualisationDialog
• onNotify() : BALL::VIEW::LabelDialog , BALL::VIEW::ModifyRepresentationDialog , BALL::VIEW::MolecularFileDialog , BALL::VIEW::ConnectionObject , BALL::VIEW::MainControl , BALL::VIEW::DatasetControl , BALL::VIEW::DockingController , BALL::VIEW::EditableScene , BALL::VIEW::GenericControl , BALL::VIEW::GeometricControl , BALL::VIEW::HelpViewer , BALL::VIEW::MolecularControl , BALL::NotificationTarget< NotificationSource > , BALL::VIEW::MolecularStructure , BALL::VIEW::RegularData1DWidget , BALL::VIEW::DisplayProperties , BALL::VIEW::RegularData2DWidget , BALL::VIEW::Scene
• open() : BALL::DCDFile , BALL::DSN6File , BALL::MolFileFactory , BALL::File , BALL::VIEW::DatasetController
• OpenBruker1DFile() : BALL::VIEW::OpenBruker1DFile
• OpenBruker2DFile() : BALL::VIEW::OpenBruker2DFile
• openFile() : BALL::VIEW::MolecularFileDialog , BALL::VIEW::OpenBruker1DFile , BALL::VIEW::OpenBruker2DFile , BALL::VIEW::MainControl , BALL::VIEW::ModularWidget , BALL::VIEW::DatasetControl , BALL::VIEW::PyWidget , BALL::VIEW::TestFramework
• openItems() : BALL::VIEW::NewSelectionMessage
• OpenMode : BALL::File
• openMolecularFile() : BALL::VIEW::MolecularFileDialog
• operator BitVector &() : BALL::PropertyManager
• operator bool() : BALL::Bit
• operator char() : BALL::VIEW::ColorUnit
• operator const Position &() : BALL::BaseIterator< Container, DataType, Position, Traits >
• operator delete() : BALL::AutoDeletable
• operator double() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator float() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator int() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator long() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator long double() : BALL::VIEW::ColorUnitHue
• operator new() : BALL::AutoDeletable
• operator short() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator String() : BALL::Substring , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator T() : BALL::TAngle< T >
• operator unsigned char() : BALL::VIEW::ColorUnit
• operator unsigned int() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator unsigned long() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator unsigned short() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator!=() : BALL::Protein , BALL::Element , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::TPlane3< T > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint , BALL::Directory , BALL::File , BALL::Timer , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::Composite , BALL::EnumeratorIndex , BALL::Object , BALL::NamedProperty , BALL::PropertyManager , BALL::Selectable , BALL::Bit , BALL::BitVector , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::HashSet< Key > , BALL::List< Value > , BALL::Options , BALL::Quadruple< T1, T2, T3, T4 > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::RegularExpression , BALL::Substring , BALL::StringHashMap< Value > , BALL::Triple< T1, T2, T3 > , BALL::JCAMPFile , BALL::LineBasedFile , BALL::NMRStarFile , BALL::PDBInfo , BALL::ResourceEntry , BALL::ResourceFile , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Chain , BALL::ExpressionTree , BALL::Fragment , BALL::CompositeIteratorTraits , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom
• operator%() : BALL::TVector3< T >
• operator%=() : BALL::TVector3< T >
• operator&() : BALL::BitVector , BALL::HashSet< Key >
• operator&=() : BALL::BitVector , BALL::HashSet< Key >
• operator()() : BALL::Pair6_12RDFIntegrator , BALL::PairExpRDFIntegrator , BALL::AddHydrogenProcessor , BALL::AssignBondOrderProcessor , BALL::BindingPocketProcessor , BALL::BuildBondsProcessor , BALL::ClearChargeProcessor , BALL::ClearRadiusProcessor , BALL::AssignRadiusProcessor , BALL::AssignChargeProcessor , BALL::DockResult , BALL::DockResult::DockResult::Compare_ , BALL::EnergeticEvaluation , BALL::ForceFieldEvaluation , BALL::RandomEvaluation , BALL::FragmentDB::FragmentDB::NormalizeNamesProcessor , BALL::FragmentDB::FragmentDB::BuildBondsProcessor , BALL::BoundingBoxProcessor , BALL::GeometricCenterProcessor , BALL::FragmentDistanceCollector , BALL::TranslationProcessor , BALL::TransformationProcessor , BALL::HBondProcessor , BALL::HybridisationProcessor , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::ReconstructFragmentProcessor , BALL::ResidueChecker , BALL::SecondaryStructureProcessor , BALL::SurfaceProcessor , BALL::VIEW::DockResultDialog::DockResultDialog::Compare_ , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::ColorProcessor , BALL::VIEW::ForceModel , BALL::VIEW::HBondModelProcessor , BALL::VIEW::LabelModel , BALL::VIEW::AddLineModel , BALL::VIEW::AtomDistanceColorProcessor , BALL::VIEW::AddSurfaceModel , BALL::VIEW::AddVanDerWaalsModel , BALL::Comparator< T > , BALL::UnaryProcessor< T > , BALL::BinaryProcessor< T1, T2 > , BALL::BitVector , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::String , BALL::EnergyProcessor , BALL::Expression , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::KernelPredicate< T > , BALL::Selector , BALL::TruePredicate , BALL::FalsePredicate , BALL::SelectedPredicate , BALL::AtomNamePredicate , BALL::AtomTypePredicate , BALL::ElementPredicate , BALL::ResiduePredicate , BALL::ResidueIDPredicate , BALL::ProteinPredicate , BALL::ChainPredicate , BALL::SecondaryStructurePredicate , BALL::SolventPredicate , BALL::MoleculePredicate , BALL::BackBonePredicate , BALL::NucleotidePredicate , BALL::InRingPredicate , BALL::NumberOfBondsPredicate , BALL::SingleBondsPredicate , BALL::DoubleBondsPredicate , BALL::TripleBondsPredicate , BALL::AromaticBondsPredicate , BALL::ConnectedToPredicate , BALL::SpHybridizedPredicate , BALL::Sp2HybridizedPredicate , BALL::Sp3HybridizedPredicate , BALL::ChargePredicate , BALL::AxialPredicate , BALL::Conformation4C1Predicate , BALL::RingFinder , BALL::SMARTSPredicate , BALL::ConstantFunction< constant_template > , BALL::MutableConstant< DataType > , BALL::Addition< First, Second, DataType > , BALL::Subtraction< First, Second, DataType > , BALL::Product< First, Second, DataType > , BALL::Division< First, Second, DataType > , BALL::Reciprocal< Function, DataType > , BALL::SquareFunction< Function, DataType > , BALL::CubicFunction< Function, DataType > , BALL::MutablePower< Function, DataType > , BALL::TMatrix4x4< T > , BALL::ParsedFunction< arg > , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::AssignTypeProcessor , BALL::AssignTypeNameProcessor , BALL::ChargeRuleProcessor , BALL::RadiusRuleProcessor , BALL::RuleEvaluator , BALL::TypenameRuleProcessor , BALL::TypeRuleProcessor , BALL::MMFF94ChargeProcessor , BALL::AnisotropyShiftProcessor , BALL::AssignShiftProcessor , BALL::ClearShiftProcessor , BALL::CreateSpectrumProcessor , BALL::EFShiftProcessor , BALL::SimpleExperiment1D , BALL::HaighMallionShiftProcessor , BALL::HBondShiftProcessor , BALL::JohnsonBoveyShiftProcessor , BALL::RandomCoilShiftProcessor , BALL::ShiftModel , BALL::AromaticityProcessor , BALL::Descriptor , BALL::PartialChargeProcessor , BALL::RingPerceptionProcessor , BALL::ElectrostaticPotentialCalculator
• operator*() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::Gradient
• operator*=() : BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::SASEdge , BALL::SASFace , BALL::SASVertex , BALL::SESEdge , BALL::SESFace , BALL::SESVertex , BALL::Triangle , BALL::TriangleEdge , BALL::TrianglePoint
• operator+() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::String , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator++() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::EnumeratorIndex , BALL::ConstForwardIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits >
• operator+=() : BALL::HashSet< Key > , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::TriangulatedSurface
• operator-() : BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::HashSet< Key > , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator--() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::EnumeratorIndex
• operator-=() : BALL::HashSet< Key > , BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator->() : BALL::LogStream , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::ForwardIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits >
• operator/() : BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator/=() : BALL::TAngle< T > , BALL::TMatrix4x4< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T >
• operator<() : BALL::EnumeratorIndex , BALL::Object , BALL::PreciseTime , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::Triple< T1, T2, T3 > , BALL::INIFile::INIFile::Section , BALL::Element , BALL::TAngle< T > , BALL::TVector3< T > , BALL::Peak< PositionType > , BALL::Timer , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::GeometricObject , BALL::VIEW::Representation , BALL::VIEW::LightSource , BALL::VIEW::Camera
• operator<<() : BALL::EnumeratorIndex , BALL::PersistenceManager , BALL::BitVector , BALL::TContourSurface< T > , BALL::RegularExpression , BALL::Substring , BALL::GenericMolFile , BALL::PDBFile , BALL::Element , BALL::BindingPocketProcessor , BALL::DockResult , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator<=() : BALL::EnumeratorIndex , BALL::Object , BALL::Quadruple< T1, T2, T3, T4 > , BALL::RegularExpression , BALL::Triple< T1, T2, T3 > , BALL::Element , BALL::TAngle< T > , BALL::Timer , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue
• operator=() : BALL::BondPolarizabilities , BALL::VIEW::DockingController , BALL::NMRStarFile , BALL::Parameters , BALL::VertexAdjacencyEquality , BALL::ParameterSection , BALL::PDBInfo , BALL::PDBRecords , BALL::NumberOfHeavyBonds , BALL::NumberOfAromaticAtoms , BALL::ResourceEntry , BALL::SCWRLRotamerFile , BALL::AtomInformationContent , BALL::TrajectoryFile , BALL::TRRFile , BALL::Atom , BALL::NumberOfHydrogen , BALL::NumberOfIodine , BALL::AtomContainer , BALL::Bond , BALL::NumberOfSulfur , BALL::Chain , BALL::Expression , BALL::ExpressionPredicate , BALL::NumberOfNitrogen , BALL::ExpressionTree , BALL::Fragment , BALL::CompositeIteratorTraits , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::NumberOfBonds , BALL::Protein , BALL::Element , BALL::PTE_ , BALL::PartialChargeProcessor , BALL::Residue , BALL::SecondaryStructure , BALL::Selector , BALL::TotalPositivePartialCharge , BALL::System , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::PyCompositeList , BALL::TFFT3D< ComplexTraits > , BALL::MutableConstant< DataType > , BALL::Addition< First, Second, DataType > , BALL::Peak< PositionType > , BALL::Subtraction< First, Second, DataType > , BALL::Product< First, Second, DataType > , BALL::Division< First, Second, DataType > , BALL::LennardJones , BALL::Reciprocal< Function, DataType > , BALL::SquareFunction< Function, DataType > , BALL::CubicFunction< Function, DataType > , BALL::MutablePower< Function, DataType > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::MMFF94TorsionParameters , BALL::TMatrix4x4< T > , BALL::NumericalIntegrator< Function, DataType > , BALL::PiecewiseFunction , BALL::MMFF94ParametersBase , BALL::PiecewisePolynomial , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::SteepestDescentMinimizer , BALL::TQuaternion< T > , BALL::RombergIntegrator< Function, DataType > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TVector2< T > , BALL::SnapShotManager , BALL::TVector3< T > , BALL::Gradient , BALL::TVector4< T > , BALL::AmberFF , BALL::AmberNonBonded , BALL::CharmmFF , BALL::CharmmNonBonded , BALL::AtomVector , BALL::ForceField , BALL::Gradient , BALL::PeriodicBoundary , BALL::RuleEvaluator , BALL::SnapShot , BALL::CanonicalMD , BALL::MicroCanonicalMD , BALL::MolecularDynamics , BALL::ConjugateGradientMinimizer , BALL::EnergyMinimizer , BALL::LineSearch , BALL::ShiftedLVMMMinimizer , BALL::StrangLBFGSMinimizer , BALL::MMFF94 , BALL::MMFF94NonBonded , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::AtomTypes , BALL::CharmmEEF1 , BALL::CosineTorsion , BALL::ForceFieldParameters , BALL::Potential1210 , BALL::QuadraticImproperTorsion , BALL::Templates , BALL::ShiftModel , BALL::ShiftModule , BALL::PyDatasetVector , BALL::AromaticityProcessor , BALL::ConnectivityBase , BALL::ZagrebIndex , BALL::BalabanIndexJ , BALL::Descriptor , BALL::PartialChargeBase , BALL::TotalNegativePartialCharge , BALL::RelPositivePartialCharge , BALL::RelNegativePartialCharge , BALL::RingPerceptionProcessor , BALL::SimpleBase , BALL::MolecularWeight , BALL::TriangulatedSES , BALL::VIEW::ColorProcessor , BALL::NumberOfSingleBonds , BALL::NumberOfDoubleBonds , BALL::NumberOfTripleBonds , BALL::NumberOfAromaticBonds , BALL::NumberOfAtoms , BALL::NumberOfBoron , BALL::NumberOfCarbon , BALL::VIEW::Sphere , BALL::NumberOfOxygen , BALL::NumberOfFlourine , BALL::NumberOfPhosphorus , BALL::NumberOfChlorine , BALL::NumberOfBromine , BALL::VIEW::TwoColoredLine , BALL::VIEW::HBondModelProcessor , BALL::VIEW::Mesh , BALL::FormalCharge , BALL::NumberOfHeavyAtoms , BALL::MeanAtomInformationContent , BALL::NumberOfRotatableSingleBonds , BALL::LineBasedFile , BALL::RelNumberOfRotatableSingleBonds , BALL::VIEW::Point , BALL::VIEW::Box , BALL::GAMESSDatFile , BALL::NumberOfRotatableBonds , BALL::RelNumberOfRotatableBonds , BALL::VertexAdjacency , BALL::ComposedEnergyProcessor , BALL::NumberOfHydrogenBondAcceptors , BALL::NumberOfHydrogenBondDonors , BALL::NumberOfHydrophobicAtoms , BALL::VIEW::ColorUnitHue , BALL::VIEW::DockDialog , BALL::VIEW::AtomBondModelBaseProcessor , BALL::AtomicPolarizabilities , BALL::String , BALL::SizeOfSSSR , BALL::PrincipalMomentOfInertia , BALL::PrincipalMomentOfInertiaY , BALL::String , BALL::PrincipalMomentOfInertiaZ , BALL::SurfaceBase , BALL::VIEW::DockResultDialog , BALL::String , BALL::NegativeVdWSurface , BALL::PositivePolarVdWSurface , BALL::NegativePolarVdWSurface , BALL::PolarVdWSurface , BALL::RelPositiveVdWSurface , BALL::VIEW::GeometricObject , BALL::VIEW::ColorUnitHue , BALL::Quadruple< T1, T2, T3, T4 > , BALL::VIEW::Dataset , BALL::RelNegativePolarVdWSurface , BALL::RelHydrophobicVdWSurface , BALL::HashGrid3< Item > , BALL::RelPolarVdWSurface , BALL::Density , BALL::VdWSurface , BALL::BitVector , BALL::VIEW::Vertex2 , BALL::VIEW::ColorUnitHue , BALL::HydrogenBond , BALL::Lipophilic , BALL::ChemScoreMetal , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::Object , BALL::SLICKEnergy , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::ClaverieParameter , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator , BALL::PCMCavFreeEnergyProcessor , BALL::PierottiCavFreeEnergyProcessor , BALL::VIEW::ColorUnitHue , BALL::SolventDescriptor , BALL::SolventParameter , BALL::UhligCavFreeEnergyProcessor , BALL::BindingPocketProcessor , BALL::BuildBondsProcessor , BALL::DockResult , BALL::VIEW::ColorUnit , BALL::FragmentDB , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::HybridisationProcessor , BALL::RadialDistributionFunction , BALL::VIEW::ColorUnit , BALL::RDFParameter , BALL::ReducedSurface , BALL::ResidueRotamerSet , BALL::RSEdge , BALL::RSFace , BALL::RSVertex , BALL::VIEW::ColorHSV , BALL::VIEW::ColorUnit , BALL::SASFace , BALL::SASVertex , BALL::SESEdge , BALL::SESVertex , BALL::SmartsMatcher::SmartsMatcher::RecStructCore_ , BALL::SmartsMatcher::SmartsMatcher::RecStruct_ , BALL::VIEW::ColorRGBA , BALL::Triangle , BALL::TrianglePoint , BALL::TriangulatedSAS , BALL::TriangulatedSurface , BALL::TriangulatedSphere , BALL::VIEW::ColorRGBA , BALL::Directory , BALL::VIEW::ColorHSV , BALL::Timer , BALL::VIEW::ColorExtension2 , BALL::VIEW::MultiColorExtension , BALL::VIEW::ColorHSV , BALL::File , BALL::VIEW::ColorRGBA , BALL::VIEW::TwoColoredTube , BALL::VIEW::ColorUnit , BALL::VIEW::SimpleBox , BALL::HydrophobicVdWSurface , BALL::VIEW::ColorUnit , BALL::VIEW::DockingThread , BALL::VIEW::ColorUnit , BALL::SmartsParser::SmartsParser::SPAtom::SmartsParser::SPAtom::Property , BALL::VIEW::ColorUnitHue , BALL::SESFace , BALL::VIEW::ColorUnitHue , BALL::VIEW::Vertex , BALL::SASEdge , BALL::VIEW::GeometricFitDialog , BALL::VIEW::AddBallAndStickModel , BALL::RotamerLibrary , BALL::VIEW::Disc , BALL::VIEW::Label , BALL::VIEW::Line , BALL::VIEW::MultiLine , BALL::RDFIntegrator , BALL::VIEW::Tube , BALL::VIEW::Scene , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::DockResult::DockResult::Scoring_ , BALL::AssignBondOrderProcessor , BALL::ReissCavFreeEnergyProcessor , BALL::SLICKScore , BALL::BuriedPolar , BALL::NonpolarSolvation , BALL::CHPI , BALL::RelNegativeVdWSurface , BALL::VdWVolume , BALL::RelPositivePolarVdWSurface , BALL::PrincipalMomentOfInertiaX , BALL::PositiveVdWSurface , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::Composite , BALL::EnumeratorIndex , BALL::PropertyManager , BALL::Selectable , BALL::PreciseTime , BALL::TimeStamp , BALL::Bit , BALL::BitVector , BALL::TContour< T > , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::HashSet< Key > , BALL::List< Value > , BALL::Options , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::RegularExpression , BALL::String , BALL::Substring , BALL::StringHashMap< Value > , BALL::Triple< T1, T2, T3 > , BALL::EnergyProcessor , BALL::DCDFile , BALL::DSN6File , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::HINFile
• operator==() : BALL::CharmmNonBonded , BALL::Pair6_12RDFIntegrator , BALL::TimeStamp , BALL::PierottiCavFreeEnergyProcessor , BALL::Timer , BALL::TVector2< T > , BALL::VIEW::ColorHSV , BALL::VIEW::ColorUnitHue , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::Subtraction< First, Second, DataType > , BALL::TrianglePoint , BALL::SESEdge , BALL::Directory , BALL::AtomTypes , BALL::PropertyManager , BALL::SESFace , BALL::TriangleEdge , BALL::SESVertex , BALL::SASEdge , BALL::RDFIntegrator , BALL::SASFace , BALL::Composite , BALL::HashGridBox3< Item > , BALL::RDFSection , BALL::RSVertex , BALL::TContour< T > , BALL::RSEdge , BALL::RSFace , BALL::Potential1210 , BALL::UhligCavFreeEnergyProcessor , BALL::GraphTriangle< Vertex, Edge, Face > , BALL::Bit , BALL::SolventDescriptor , BALL::GraphVertex< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::ForceFieldParameters , BALL::HashMap< Key, T > , BALL::Product< First, Second, DataType > , BALL::PCMCavFreeEnergyProcessor , BALL::HashGrid3< Item > , BALL::PairExpRDFIntegrator , BALL::Pair6_12InteractionEnergyProcessor , BALL::ClaverieParameter , BALL::Peak< PositionType > , BALL::LennardJones , BALL::HashSet< Key > , BALL::TContourSurface< T > , BALL::BaseIterator< Container, DataType, Position, Traits > , BALL::TContourLine< T > , BALL::Bit , BALL::Selectable , BALL::EnumeratorIndex , BALL::SolventParameter , BALL::TMatrix4x4< T > , BALL::TCircle3< T > , BALL::RegularExpression , BALL::GraphEdge< Vertex, Edge, Face > , BALL::DSN6File , BALL::Substring , BALL::TRegularData1D< ValueType > , BALL::ComposedEnergyProcessor , BALL::Triple< T1, T2, T3 > , BALL::JCAMPFile , BALL::NMRStarFile , BALL::Parameters , BALL::RadialDistributionFunction , BALL::ParameterSection , BALL::ResourceEntry , BALL::PiecewisePolynomial , BALL::AtomContainer , BALL::Division< First, Second, DataType > , BALL::CubicFunction< Function, DataType > , BALL::Atom , BALL::TrajectoryFile , BALL::SquareFunction< Function, DataType > , BALL::Triangle , BALL::TVector3< T > , BALL::ExpressionTree , BALL::VIEW::GeometricObject , BALL::CompositeIteratorTraits , BALL::NucleicAcid , BALL::PDBAtom , BALL::ExpressionPredicate , BALL::Residue , BALL::TAngle< T > , BALL::CosineTorsion , BALL::Selector , BALL::AmberNonBonded , BALL::MutableConstant< DataType > , BALL::Quadruple< T1, T2, T3, T4 > , BALL::Element , BALL::Molecule , BALL::BitVector , BALL::TSimpleBox3< T > , BALL::PiecewiseFunction , BALL::Protein , BALL::RuleEvaluator , BALL::Fragment , BALL::RombergIntegrator< Function, DataType > , BALL::SecondaryStructure , BALL::PDBInfo , BALL::LineBasedFile , BALL::TBox3< T > , BALL::StringHashMap< Value > , BALL::Substring , BALL::TPlane3< T > , BALL::TFFT2D< ComplexTraits > , BALL::Object , BALL::NamedProperty , BALL::PreciseTime , BALL::TRegularData3D< ValueType > , BALL::SnapShot , BALL::TFFT3D< ComplexTraits > , BALL::TVector4< T > , BALL::List< Value > , BALL::Options , BALL::TRegularData2D< ValueType > , BALL::MMFF94NonBonded , BALL::PTE_ , BALL::DCDFile , BALL::Reciprocal< Function, DataType > , BALL::MutablePower< Function, DataType > , BALL::Chain , BALL::Expression , BALL::Nucleotide , BALL::System , BALL::TFFT1D< ComplexTraits > , BALL::Addition< First, Second, DataType > , BALL::TLine3< T > , BALL::NumericalIntegrator< Function, DataType > , BALL::INIFile , BALL::CharmmEEF1 , BALL::TSphere3< T > , BALL::TRRFile , BALL::EnergyMinimizer , BALL::ReissCavFreeEnergyProcessor , BALL::Bond , BALL::QuadraticImproperTorsion , BALL::ResourceFile , BALL::SASVertex , BALL::File , BALL::Substring , BALL::EnergyProcessor , BALL::Substring
• operator>() : BALL::TAngle< T > , BALL::VIEW::ColorRGBA , BALL::Triple< T1, T2, T3 > , BALL::Peak< PositionType > , BALL::EnumeratorIndex , BALL::VIEW::ColorHSV , BALL::VIEW::ColorUnitHue , BALL::RegularExpression , BALL::PreciseTime , BALL::Quadruple< T1, T2, T3, T4 > , BALL::VIEW::ColorUnit , BALL::Object , BALL::INIFile::INIFile::Section , BALL::Timer , BALL::Element
• operator>=() : BALL::VIEW::ColorUnit , BALL::VIEW::ColorRGBA , BALL::Object , BALL::Element , BALL::EnumeratorIndex , BALL::RegularExpression , BALL::VIEW::ColorHSV , BALL::Quadruple< T1, T2, T3, T4 > , BALL::Timer , BALL::TAngle< T > , BALL::VIEW::ColorUnitHue , BALL::Triple< T1, T2, T3 >
• operator>>() : BALL::PDBFile , BALL::GenericMolFile , BALL::RegularExpression , BALL::GenericMolFile , BALL::VIEW::ColorUnit , BALL::PersistentObject , BALL::SCWRLRotamerFile , BALL::VIEW::ColorUnitHue , BALL::DockResult , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::TRRFile , BALL::BitVector , BALL::PDBFile , BALL::PersistenceManager , BALL::PDBFile
• operator[]() : BALL::PTE_ , BALL::TRegularData3D< ValueType > , BALL::TFFT3D< ComplexTraits > , BALL::PTE_ , BALL::TRegularData2D< ValueType > , BALL::TVector4< T > , BALL::TVector2< T > , BALL::PTE_ , BALL::TFFT3D< ComplexTraits > , BALL::Substring , BALL::ResidueRotamerSet , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT1D< ComplexTraits > , BALL::PTE_ , BALL::TRegularData3D< ValueType > , BALL::PTE_ , BALL::TFFT2D< ComplexTraits > , BALL::PTE_ , BALL::TFFT3D< ComplexTraits > , BALL::TMatrix4x4< T > , BALL::TVector4< T > , BALL::BitVector , BALL::TRegularData1D< ValueType > , BALL::ConformationSet , BALL::TVector3< T > , BALL::TRegularData2D< ValueType > , BALL::TFFT3D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT1D< ComplexTraits > , BALL::TRegularData2D< ValueType > , BALL::BitVector , BALL::TRegularData3D< ValueType > , BALL::TFFT2D< ComplexTraits > , BALL::HashMap< Key, T > , BALL::EnumeratorIndex , BALL::PTE_ , BALL::TRegularData3D< ValueType > , BALL::HashMap< Key, T > , BALL::TFFT2D< ComplexTraits > , BALL::EnumeratorIndex , BALL::TRegularData2D< ValueType > , BALL::TVector3< T > , BALL::TRegularData1D< ValueType > , BALL::TMatrix4x4< T > , BALL::Substring , BALL::TVector2< T > , BALL::AtomVector
• operator^() : BALL::BitVector
• operator^=() : BALL::BitVector
• operator|() : BALL::HashSet< Key > , BALL::BitVector
• operator|=() : BALL::BitVector , BALL::HashSet< Key >
• operator~() : BALL::BitVector
• optimizeGridSize_() : BALL::GeometricFit
• options : BALL::BuildBondsProcessor , BALL::ForceField , BALL::Pair6_12RDFIntegrator , BALL::Pair6_12InteractionEnergyProcessor , BALL::AssignBondOrderProcessor , BALL::PeriodicBoundary
• Options() : BALL::Options
• options : BALL::SnapShotManager , BALL::AromaticityProcessor , BALL::FDPB , BALL::MolecularDynamics , BALL::ShiftModel , BALL::ReissCavFreeEnergyProcessor , BALL::UhligCavFreeEnergyProcessor
• Options() : BALL::Options
• options : BALL::BindingPocketProcessor , BALL::PairExpInteractionEnergyProcessor , BALL::ElectrostaticPotentialCalculator , BALL::ParameterSection , BALL::HybridisationProcessor , BALL::DockingAlgorithm , BALL::GeometricFit , BALL::SDGenerator , BALL::PierottiCavFreeEnergyProcessor , BALL::PDBFile , BALL::EnergyMinimizer , BALL::PCMCavFreeEnergyProcessor
• options_ : BALL::DockResult::DockResult::Scoring_
• OR : BALL::ExpressionTree
• Order : BALL::Bond
• ORDER__ANY : BALL::Bond
• ORDER__AROMATIC : BALL::Bond
• ORDER__DOUBLE : BALL::Bond
• ORDER__QUADRUPLE : BALL::Bond
• ORDER__SINGLE : BALL::Bond
• ORDER__TRIPLE : BALL::Bond
• ORDER__UNKNOWN : BALL::Bond
• origin_ : BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TRegularData1D< ValueType > , BALL::DSN6File , BALL::TFFT1D< ComplexTraits > , BALL::TRegularData3D< ValueType > , BALL::TRegularData2D< ValueType >
• original_coordinates_ : BALL::ResidueRotamerSet
• other() : BALL::GraphEdge< Vertex, Edge, Face >
• output_() : BALL::VIEW::BALLThread
• outputEnabled() : BALL::LogStream
• overflow() : BALL::LogStreamBuf
• OVERWRITE_BOND_ORDERS : BALL::AromaticityProcessor::AromaticityProcessor::Option
• OVERWRITE_CHARGES : BALL::CharmmFF::CharmmFF::Default , BALL::MMFF94::MMFF94::Option , BALL::AmberFF::AmberFF::Option , BALL::CharmmFF::CharmmFF::Option , BALL::MMFF94::MMFF94::Default , BALL::AmberFF::AmberFF::Default
• OVERWRITE_DOUBLE_BOND_ORDERS : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• OVERWRITE_SELECTED_BONDS : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• OVERWRITE_SINGLE_BOND_ORDERS : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• OVERWRITE_TRIPLE_BOND_ORDERS : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• OVERWRITE_TYPENAMES : BALL::MMFF94::MMFF94::Default , BALL::MMFF94::MMFF94::Option , BALL::AmberFF::AmberFF::Default , BALL::AmberFF::AmberFF::Option , BALL::CharmmFF::CharmmFF::Option , BALL::CharmmFF::CharmmFF::Default