Here is a list of all documented class members with links to the class documentation for each member:

- r -

• R : BALL::Constant
• r_min : BALL::CharmmEEF1::CharmmEEF1::Values
• RAD_PER_DEG : BALL::Constant
• RadialDistributionFunction() : BALL::RadialDistributionFunction
• radius : BALL::TSphere3< T > , BALL::SolventAtomDescriptor , BALL::TCircle3< T >
• RADIUS_HYDROGEN : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• RadiusRuleProcessor() : BALL::RadiusRuleProcessor
• RandomCoilShiftProcessor() : BALL::RandomCoilShiftProcessor
• randomDouble() : BALL::RandomNumberGenerator
• randomGaussian() : BALL::RandomNumberGenerator
• randomInteger() : BALL::RandomNumberGenerator
• randomUniform() : BALL::RandomNumberGenerator
• Range : BALL::TAngle< T >
• RANK_1 : BALL::ShiftedLVMMMinimizer
• RANK_2 : BALL::ShiftedLVMMMinimizer
• RATIO_OF_SHIFT_PARAMS : BALL::ShiftedLVMMMinimizer
• rbegin() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::RandomAccessIterator< Container, DataType, Position, Traits > , BALL::Gradient
• rbeginBond() : BALL::Atom
• rdbuf() : BALL::LogStream
• RDF_FILENAME : BALL::PairExpInteractionEnergyProcessor::PairExpInteractionEnergyProcessor::Option , BALL::Pair6_12InteractionEnergyProcessor::Pair6_12InteractionEnergyProcessor::Option
• RDFIntegrator() : BALL::RDFIntegrator
• RDFParameter() : BALL::RDFParameter
• RDFSection() : BALL::RDFSection
• reactToMessages_() : BALL::VIEW::MolecularControl
• read() : BALL::KCFFile , BALL::MOL2File , BALL::MOLFile , BALL::PDBFile , BALL::SDFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::XYZFile , BALL::TVector3< T > , BALL::PropertyManager , BALL::Selectable , BALL::PreciseTime , BALL::TimeStamp , BALL::BitVector , BALL::Options , BALL::Bruker1DFile , BALL::Bruker2DFile , BALL::DCDFile , BALL::DSN6File , BALL::GAMESSDatFile , BALL::GAMESSLogFile , BALL::GenericMolFile , BALL::HINFile , BALL::INIFile , BALL::JCAMPFile , BALL::KCFFile
• read_atoms_ : BALL::SDFile
• readAtomLine_() : BALL::MOLFile
• readAtomPenalties_() : BALL::AssignBondOrderProcessor
• readAtomTypeSmartsFromFile_() : BALL::HybridisationProcessor
• readBondLengthsFromFile_() : BALL::BuildBondsProcessor
• readBondLine_() : BALL::MOLFile
• readCountsLine_() : BALL::MOLFile
• readCTAB_() : BALL::MOLFile
• readDockResult() : BALL::DockResult
• readEmpiricalParameters() : BALL::MMFF94StretchBendParameters
• readFiles() : BALL::VIEW::MolecularFileDialog
• readFirstRecord() : BALL::PDBFile
• readFromFile() : BALL::SnapShotManager
• readHeader() : BALL::DCDFile , BALL::DSN6File , BALL::TrajectoryFile
• readHINFile() : BALL::VIEW::MolecularFileDialog
• readInputFromSocket_() : BALL::TCPTransfer
• readInvalidRecord() : BALL::PDBFile
• readLine() : BALL::LineBasedFile , BALL::PDBFile
• readMOL2File() : BALL::VIEW::MolecularFileDialog
• readMOLFile() : BALL::VIEW::MolecularFileDialog
• readMSMSFile() : BALL::TSurface< T >
• readNextHeader() : BALL::TRRFile
• readNextRecord() : BALL::PDBFile
• readObject() : BALL::PersistenceManager
• readObjectArray() : BALL::PersistenceManager
• readObjectPointer() : BALL::PersistenceManager
• readObjectPointerArray() : BALL::PersistenceManager
• readObjectReference() : BALL::PersistenceManager
• readOptionFile() : BALL::Options
• readOptions_() : BALL::AssignBondOrderProcessor
• readPDBFile() : BALL::VIEW::MolecularFileDialog
• readPreferenceEntries() : BALL::VIEW::MainControlPreferences , BALL::VIEW::PluginDialog , BALL::VIEW::PythonSettings , BALL::VIEW::PreferencesEntry
• readPrimitive() : BALL::PersistenceManager
• readPropertyBlock_() : BALL::SDFile
• readRecords() : BALL::PDBFile
• readSDFile() : BALL::VIEW::MolecularFileDialog
• readShortcutsFromFile() : BALL::VIEW::ShortcutRegistry
• readStorableObject() : BALL::PersistenceManager
• readUnknownRecord() : BALL::PDBFile
• readXYZFile() : BALL::VIEW::MolecularFileDialog
• REAL : BALL::RegularExpression
• real_renderer_ : BALL::VIEW::TilingRenderer
• REBUILD_DISPLAY_LISTS : BALL::VIEW::GLRenderer , BALL::VIEW::SceneMessage
• rec_edges_ : BALL::SmartsParser
• receivesBufferUpdates() : BALL::VIEW::RenderSetup
• Reciprocal() : BALL::Reciprocal< Function, DataType >
• ReconstructFragmentProcessor() : BALL::ReconstructFragmentProcessor
• records_ : BALL::PDBRecords
• RecStruct_() : BALL::SmartsMatcher::SmartsMatcher::RecStruct_
• RecStructCore_() : BALL::SmartsMatcher::SmartsMatcher::RecStructCore_
• RecStructPool_() : BALL::SmartsMatcher::SmartsMatcher::RecStructPool_
• recurseGeneration_() : BALL::VIEW::MolecularControl
• recursive_ : BALL::SmartsParser::SmartsParser::SPNode , BALL::SmartsParser
• redock_() : BALL::VIEW::DockResultDialog
• REDRAW : BALL::VIEW::SceneMessage
• redrawAllRepresentations() : BALL::VIEW::MainControl
• ReducedSurface() : BALL::ReducedSurface
• REESTIMATE_BONDORDERS_RINGS : BALL::BuildBondsProcessor::BuildBondsProcessor::Option , BALL::BuildBondsProcessor::BuildBondsProcessor::Default
• reestimateBondOrdersRings_() : BALL::BuildBondsProcessor
• REFERENCE_TEMPERATURE : BALL::MolecularDynamics::MolecularDynamics::Option
• refine() : BALL::TriangulatedSphere
• refresh() : BALL::VIEW::GLOffscreenTarget , BALL::VIEW::GLRenderWindow , BALL::VIEW::RenderWindow< taPixelDatatype >
• registerClass() : BALL::PersistenceManager
• registerConnectionObject() : BALL::VIEW::ConnectionObject
• registerController() : BALL::VIEW::DatasetControl
• registerForHelpSystem() : BALL::VIEW::ModularWidget , BALL::VIEW::DockWidget , BALL::VIEW::HelpViewer
• registerHandler() : BALL::PluginManager
• registerModule() : BALL::ShiftModel
• registerObjectCreator() : BALL::VIEW::ServerWidget
• registerPredicate() : BALL::Expression
• registerSmartPointer() : BALL::PersistenceManager
• registerThis() : BALL::Embeddable
• registerTransformation() : BALL::TransformationManager
• registerWidget() : BALL::VIEW::ModularWidget
• registerWidgetForHelpSystem_() : BALL::VIEW::PreferencesEntry
• registerWidgets_() : BALL::VIEW::PreferencesEntry
• RegularData1DWidget() : BALL::VIEW::RegularData1DWidget
• RegularExpression() : BALL::RegularExpression
• ReissCavFreeEnergyProcessor() : BALL::ReissCavFreeEnergyProcessor
• reject() : BALL::VIEW::GeometricFitDialog
• RelHydrophobicVdWSurface() : BALL::RelHydrophobicVdWSurface
• RelNegativePartialCharge() : BALL::RelNegativePartialCharge
• RelNegativePolarVdWSurface() : BALL::RelNegativePolarVdWSurface
• RelNegativeVdWSurface() : BALL::RelNegativeVdWSurface
• RelNumberOfRotatableBonds() : BALL::RelNumberOfRotatableBonds
• RelNumberOfRotatableSingleBonds() : BALL::RelNumberOfRotatableSingleBonds
• RelPolarVdWSurface() : BALL::RelPolarVdWSurface
• RelPositivePartialCharge() : BALL::RelPositivePartialCharge
• RelPositivePolarVdWSurface() : BALL::RelPositivePolarVdWSurface
• RelPositiveVdWSurface() : BALL::RelPositiveVdWSurface
• RemotenessIndicator : BALL::PDBAtom
• REMOVE : BALL::VIEW::DatasetMessage , BALL::VIEW::RepresentationMessage
• remove() : BALL::LogStream , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::List< Value > , BALL::StringHashMap< Value > , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::GraphEdge< Vertex, Edge, Face > , BALL::GraphFace< Vertex, Edge, Face > , BALL::GraphVertex< Vertex, Edge, Face > , BALL::RSFace , BALL::Triangle , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::VIEW::CompositeManager , BALL::VIEW::MainControl , BALL::VIEW::RepresentationManager
• REMOVE_COORDINATE_SYSTEM : BALL::VIEW::SceneMessage
• removeAll() : BALL::HashGridBox3< Item >
• removeChild() : BALL::Composite , BALL::ResourceEntry
• removeComponent() : BALL::ForceField , BALL::ComposedEnergyProcessor , BALL::ForceField
• removeComposite() : BALL::VIEW::MolecularControl
• REMOVED_COMPOSITE : BALL::VIEW::CompositeMessage
• removedComposite() : BALL::VIEW::RepresentationManager
• removeEntry() : BALL::VIEW::Preferences
• removeGridTextures() : BALL::VIEW::RenderSetup
• removeLightPressed() : BALL::VIEW::LightSettings
• removeLightSource() : BALL::VIEW::Stage
• removeModularWidget() : BALL::VIEW::MainControl
• removePluginDirectory() : BALL::PluginManager
• removeRepresentation() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::RenderSetup , BALL::VIEW::TilingRenderer , BALL::VIEW::GeometricControl
• removeSelected() : BALL::Composite
• removeSolvent() : BALL::PeriodicBoundary
• removeUnselected() : BALL::Composite
• rename() : BALL::Directory , BALL::File
• renameTo() : BALL::File , BALL::Directory
• rend() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits > , BALL::BidirectionalIterator< Container, DataType, Position, Traits > , BALL::Gradient , BALL::RandomAccessIterator< Container, DataType, Position, Traits >
• rendBond() : BALL::Atom
• render_() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
• renderBox_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderDisc_() : BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::GLRenderer
• Renderer() : BALL::VIEW::Renderer
• renderGridVisualisation_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::POVRenderer
• renderMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• renderMultiLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer
• renderOneRepresentation() : BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer , BALL::VIEW::POVRenderer
• renderPoint_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::POVRenderer
• renderQuadMesh_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderRuler() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer , BALL::VIEW::TilingRenderer
• renderSimpleBox_() : BALL::VIEW::GLRenderer , BALL::VIEW::Renderer
• renderSphere_() : BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::STLRenderer
• renderToBuffer() : BALL::VIEW::BufferedRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::RenderSetup
• renderToBufferImpl() : BALL::VIEW::BufferedRenderer
• renderTube_() : BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::STLRenderer
• renderTwoColoredLine_() : BALL::VIEW::GLRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::Renderer , BALL::VIEW::VRMLRenderer , BALL::VIEW::POVRenderer
• renderTwoColoredTube_() : BALL::VIEW::Renderer , BALL::VIEW::POVRenderer , BALL::VIEW::GLRenderer , BALL::VIEW::STLRenderer , BALL::VIEW::VRMLRenderer
• reopen() : BALL::File
• replace() : BALL::Composite
• Representation() : BALL::VIEW::Representation
• RepresentationManager() : BALL::VIEW::RepresentationManager
• RepresentationMessageType : BALL::VIEW::RepresentationMessage
• RepresentationsConstIterator : BALL::VIEW::RepresentationManager
• RepresentationsIterator : BALL::VIEW::RepresentationManager
• rescale() : BALL::TRegularData1D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::TRegularData2D< ValueType >
• reset() : BALL::Path , BALL::VIEW::GeometricFitDialog , BALL::Timer , BALL::VIEW::DockDialog
• resetBondOrders() : BALL::AssignBondOrderProcessor
• resetCamera_() : BALL::VIEW::Scene
• resetCounter() : BALL::TContourLine< T > , BALL::TContour< T >
• resetPositions() : BALL::AtomVector
• resetPressed() : BALL::VIEW::DockDialog
• resetRepresentationsForRenderer_() : BALL::VIEW::Scene
• resetScoring() : BALL::ConformationSet
• Residue() : BALL::Residue
• residue_data_ : BALL::HBondProcessor
• ResidueChecker() : BALL::ResidueChecker
• ResidueNameColorProcessor() : BALL::VIEW::ResidueNameColorProcessor
• ResidueRotamerSet() : BALL::ResidueRotamerSet
• ResidueTorsions() : BALL::ResidueTorsions
• resize() : BALL::TRegularData2D< ValueType > , BALL::AtomVector , BALL::VIEW::GLOffscreenTarget , BALL::VIEW::RenderSetup , BALL::VIEW::GLRenderWindow , BALL::VIEW::FrameBufferFormat , BALL::VIEW::RenderWindow< taPixelDatatype > , BALL::VIEW::MainControl , BALL::TRegularData3D< ValueType > , BALL::TRegularData1D< ValueType >
• resized() : BALL::VIEW::FrameBufferFormat
• resizeEvent() : BALL::VIEW::Scene
• resizeNormals() : BALL::TSurface< T >
• resizeTriangles() : BALL::TSurface< T >
• resizeVertices() : BALL::TSurface< T >
• ResourceEntry() : BALL::ResourceEntry
• ResourceFile() : BALL::ResourceFile
• restart_frequency_ : BALL::ConjugateGradientMinimizer
• restoreDefaultValues() : BALL::VIEW::LightSettings , BALL::VIEW::PreferencesEntry
• restoreValues() : BALL::VIEW::PreferencesEntry , BALL::VIEW::LightSettings
• restoreWindows() : BALL::VIEW::MainControl
• Result : BALL::Processor
• results : BALL::FDPB
• retrieveHistoryLine_() : BALL::VIEW::PyWidget
• reverse() : BALL::String
• ReverseIterator : BALL::Gradient
• rewind() : BALL::LineBasedFile
• rho_ : BALL::StrangLBFGSMinimizer
• right() : BALL::String
• RIGHT_EYE_WINDOW : BALL::VIEW::Scene
• ring_connections_ : BALL::SmartsParser
• RingAnalyser() : BALL::RingAnalyser
• RingClusterer() : BALL::RingClusterer
• RingFinder() : BALL::RingFinder
• RingPerceptionProcessor() : BALL::RingPerceptionProcessor
• rings_ : BALL::RingPerceptionProcessor
• rms : BALL::Gradient
• RMS_CRITERION : BALL::FDPB::FDPB::Option , BALL::FDPB::FDPB::Default
• RombergIntegrator() : BALL::RombergIntegrator< Function, DataType >
• root_ : BALL::SmartsParser
• Rotamer() : BALL::Rotamer
• RotamerLibrary() : BALL::RotamerLibrary
• rotamers_ : BALL::ResidueRotamerSet
• rotate() : BALL::VIEW::Camera , BALL::TMatrix4x4< T > , BALL::VIEW::Camera , BALL::TMatrix4x4< T >
• ROTATE__MODE : BALL::VIEW::Scene
• rotateComposites() : BALL::VIEW::Scene
• rotateMode_() : BALL::VIEW::Scene
• rotateX() : BALL::TMatrix4x4< T >
• rotateY() : BALL::TMatrix4x4< T >
• rotateZ() : BALL::TMatrix4x4< T >
• RotationalEntropyLoss() : BALL::RotationalEntropyLoss
• RSComputer() : BALL::RSComputer
• RSConstructor() : BALL::RSConstructor
• RSEdge() : BALL::RSEdge
• RSFace() : BALL::RSFace
• RSVertex() : BALL::RSVertex
• RuleEvaluator() : BALL::RuleEvaluator
• RuleList : BALL::RuleEvaluator
• RuleMap : BALL::RuleEvaluator
• RuleProcessor() : BALL::RuleProcessor
• run() : BALL::VIEW::FetchHTMLThread , BALL::SESSingularityCleaner , BALL::SESComputer , BALL::VIEW::MDSimulationThread , BALL::RSComputer , BALL::VIEW::EnergyMinimizerThread , BALL::PyInterpreter , BALL::VIEW::BALLThread , BALL::VIEW::DockingThread
• runBondOrderAssignment() : BALL::VIEW::MolecularStructure
• runDocking() : BALL::VIEW::DockingController
• runFile() : BALL::PyInterpreter
• runMinimization() : BALL::VIEW::MolecularStructure
• runScoring_() : BALL::VIEW::DockingController