Here is a list of all documented class members with links to the class documentation for each member:

- p -

• P : BALL::Rotamer
• p : BALL::TCircle3< T > , BALL::TPlane3< T > , BALL::TSphere3< T > , BALL::TLine3< T >
• p_i_ : BALL::ConjugateGradientMinimizer
• p_t_ : BALL::ConjugateGradientMinimizer
• paintGL() : BALL::VIEW::Scene
• Pair6_12InteractionEnergyProcessor() : BALL::Pair6_12InteractionEnergyProcessor
• Pair6_12RDFIntegrator() : BALL::Pair6_12RDFIntegrator
• PairExpInteractionEnergyProcessor() : BALL::PairExpInteractionEnergyProcessor
• PairExpRDFIntegrator() : BALL::PairExpRDFIntegrator
• PairVector : BALL::ForceField
• Parameters() : BALL::Parameters
• parameters_ : BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters
• ParameterSection() : BALL::ParameterSection
• PARENT_DIRECTORY : BALL::FileSystem
• pars_ : BALL::Bruker1DFile
• parse() : BALL::ExpressionParser , BALL::SmartsParser
• PARSE_INI_FILE : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PARSE_PARTIAL_CHARGES : BALL::PDBFile::PDBFile::Option , BALL::PDBFile::PDBFile::Default
• parse_partial_charges_ : BALL::PDBFile
• parseColumnFormat() : BALL::LineBasedFile
• ParsedFunction() : BALL::ParsedFunction< arg >
• parseLine() : BALL::PDBFile
• parseLine_() : BALL::VIEW::PyWidget
• parsf1_ : BALL::Bruker2DFile
• PartialChargeBase() : BALL::PartialChargeBase
• PartialChargeProcessor() : BALL::PartialChargeProcessor
• partner1Chosen() : BALL::VIEW::DockDialog
• partner2Chosen() : BALL::VIEW::DockDialog
• paste() : BALL::VIEW::MolecularControl
• path() : BALL::FileSystem
• Path() : BALL::Path
• PATH_SEPARATOR : BALL::FileSystem
• PathStrings : BALL::PyInterpreter
• pauseClicked() : BALL::VIEW::DockProgressDialog
• pauseRendering() : BALL::VIEW::RenderSetup
• PCMCavFreeEnergyProcessor() : BALL::PCMCavFreeEnergyProcessor
• PDBAtom() : BALL::PDBAtom
• PDBFile() : BALL::PDBFile
• Peak() : BALL::Peak< PositionType >
• PeakList() : BALL::PeakList< PT >
• PeakType : BALL::Experiment< PeakListType > , BALL::PeakList< PT > , BALL::Spectrum< DataT, PeakT, PositionT >
• pentakisDodecaeder() : BALL::TriangulatedSphere
• PeptideBuilder() : BALL::Peptides::PeptideBuilder
• PeptideDialog() : BALL::VIEW::PeptideDialog
• performAStarStep_() : BALL::AssignBondOrderProcessor
• Period : BALL::Element
• periodic_boundary : BALL::ForceField
• PERIODIC_BOX_ADD_SOLVENT : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_DISTANCE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_ENABLED : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_LOWER : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_FILE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_SOLVENT_SOLUTE_DISTANCE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_BOX_UPPER : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PERIODIC_WATER_FILE : BALL::PeriodicBoundary::PeriodicBoundary::Default
• PeriodicBoundary() : BALL::PeriodicBoundary
• PersistenceManager() : BALL::PersistenceManager
• PersistentObject() : BALL::PersistentObject
• persistentRead() : BALL::Composite , BALL::PersistentObject , BALL::NamedProperty , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Chain , BALL::Fragment , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TVector2< T >
• persistentWrite() : BALL::Bond , BALL::Chain , BALL::Fragment , BALL::Molecule , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::TVector2< T > , BALL::Composite , BALL::PersistentObject , BALL::NamedProperty , BALL::Atom , BALL::AtomContainer
• phase() : BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits >
• phi_ : BALL::ResidueRotamerSet
• phi_grid : BALL::FDPB
• PICKING__MODE : BALL::VIEW::Scene
• pickingMode_() : BALL::VIEW::Scene
• pickObjects() : BALL::VIEW::RenderSetup
• pickObjects1() : BALL::VIEW::GLRenderer
• pickObjects2() : BALL::VIEW::GLRenderer
• PiecewiseFunction() : BALL::PiecewiseFunction
• PiecewisePolynomial() : BALL::PiecewisePolynomial
• PierottiCavFreeEnergyProcessor() : BALL::PierottiCavFreeEnergyProcessor
• pilp : BALL::MMFF94AtomType
• PLANCK : BALL::Constant
• PlaneMap : BALL::MMFF94PlaneParameters
• Point() : BALL::VIEW::Point
• PointerType : BALL::PyColorRGBAVector , BALL::PyCompositeList , BALL::PyDatasetVector , BALL::PyIndexList
• PointType : BALL::TContourLine< T > , BALL::TContourSurface< T >
• POLAK_RIBIERE : BALL::ConjugateGradientMinimizer
• PolarSolvation() : BALL::PolarSolvation
• PolarVdWSurface() : BALL::PolarVdWSurface
• PopUpID : BALL::VIEW::MainControl
• Position : BALL::PeakList< PT >
• position_data_size : BALL::TRRFile::TRRFile::TRRHeader
• POSITIONAL : BALL::VIEW::LightSource
• PositionType : BALL::Spectrum< DataT, PeakT, PositionT >
• PositivePolarVdWSurface() : BALL::PositivePolarVdWSurface
• PositiveVdWSurface() : BALL::PositiveVdWSurface
• Potential1210() : BALL::Potential1210
• POVColorRGBA() : BALL::VIEW::POVRenderer
• POVFinish() : BALL::VIEW::POVRenderer
• POVRenderer() : BALL::VIEW::POVRenderer
• POVVector3() : BALL::VIEW::POVRenderer
• preassignPenaltyClasses_() : BALL::AssignBondOrderProcessor
• PreciseTime() : BALL::PreciseTime
• precomputeBondLengthPenalties_() : BALL::AssignBondOrderProcessor
• predicate : BALL::ExpressionParser::ExpressionParser::SyntaxTree
• predicate_ : BALL::CompositeIteratorTraits
• Preferences() : BALL::VIEW::Preferences
• prepareBufferedRendering() : BALL::VIEW::BufferedRenderer
• prepareGridTextures() : BALL::VIEW::RenderSetup
• prepend() : BALL::Molecule , BALL::AtomContainer , BALL::Chain , BALL::Molecule , BALL::Nucleotide , BALL::Residue , BALL::SecondaryStructure , BALL::System , BALL::AtomContainer
• prependChild() : BALL::Composite
• pres_size : BALL::TRRFile::TRRFile::TRRHeader
• PRESSURE : BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Option , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Default
• prev_shift_val_ : BALL::ShiftedLVMMMinimizer
• PrincipalMomentOfInertia() : BALL::PrincipalMomentOfInertia
• PrincipalMomentOfInertiaX() : BALL::PrincipalMomentOfInertiaX
• PrincipalMomentOfInertiaY() : BALL::PrincipalMomentOfInertiaY
• PrincipalMomentOfInertiaZ() : BALL::PrincipalMomentOfInertiaZ
• PRINT_TIMING : BALL::FDPB::FDPB::Default , BALL::FDPB::FDPB::Option
• printEnergy() : BALL::EnergyMinimizer
• printSelectionInfos() : BALL::VIEW::MainControl
• PROBE_LAYER_RADIUS : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PROBE_RADIUS : BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Default , BALL::ReissCavFreeEnergyProcessor::ReissCavFreeEnergyProcessor::Option , BALL::NumericalSAS::NumericalSAS::Option , BALL::FDPB::FDPB::Default , BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Option , BALL::PCMCavFreeEnergyProcessor::PCMCavFreeEnergyProcessor::Option , BALL::FDPB::FDPB::Option , BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Option , BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Default , BALL::PierottiCavFreeEnergyProcessor::PierottiCavFreeEnergyProcessor::Default , BALL::NumericalSAS::NumericalSAS::Default
• PROBE_SPHERE_RADIUS : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PROBE_SPHERE_RADIUS_HYDROGEN_FREE : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• ProbeStatus : BALL::RSComputer
• processEvents() : BALL::VIEW::MainControl
• prod_ : BALL::DSN6File
• Product() : BALL::Product< First, Second, DataType >
• Properties : BALL::VIEW::Representation
• properties_ : BALL::SmartsParser::SmartsParser::SPAtom
• Property : BALL::Chain , BALL::Fragment , BALL::Residue , BALL::SDGenerator , BALL::SmartsParser::SmartsParser::SPAtom::SmartsParser::SPAtom::Property , BALL::PDBAtom , BALL::Bond , BALL::AtomContainer , BALL::NucleicAcid , BALL::Atom , BALL::Protein , BALL::Nucleotide , BALL::Molecule
• PROPERTY__ANISOTROPY_SHIFT : BALL::AnisotropyShiftProcessor
• PROPERTY__CYCLIC : BALL::Residue
• PROPERTY__EF_SHIFT : BALL::EFShiftProcessor
• PROPERTY__RANDOM_COIL_SHIFT : BALL::RandomCoilShiftProcessor
• PROPERTY__RING_CURRENT_SHIFT : BALL::HaighMallionShiftProcessor , BALL::JohnsonBoveyShiftProcessor
• PROPERTY__SHIFT : BALL::ShiftModule
• PropertyManager() : BALL::PropertyManager
• PropertyType : BALL::SmartsParser::SmartsParser::SPAtom
• Protein() : BALL::Protein
• Protocol : BALL::TCPTransfer
• PROTON_MASS : BALL::Constant
• psi_ : BALL::ResidueRotamerSet
• PTE_() : BALL::PTE_
• PubChemDialog() : BALL::VIEW::PubChemDialog
• pushBackNormal() : BALL::TSurface< T >
• pushBackTriangle() : BALL::TSurface< T >
• pushBackVertex() : BALL::TSurface< T >
• put() : BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager , BALL::TextPersistenceManager , BALL::PersistenceManager , BALL::XDRPersistenceManager
• PW_SQUARE_WELL : BALL::BindingPocketProcessor::BindingPocketProcessor::Option
• PyColorRGBAVector() : BALL::PyColorRGBAVector
• PyCompositeList() : BALL::PyCompositeList
• PyDatasetVector() : BALL::PyDatasetVector
• PyIndexList() : BALL::PyIndexList
• PythonSettings() : BALL::VIEW::PythonSettings
• PyWidget() : BALL::VIEW::PyWidget