Here is a list of all documented class members with links to the class documentation for each member:

- c -

• c : BALL::Constant
• c_str() : BALL::Substring
• CAL_PER_JOULE : BALL::Constant
• calculate() : BALL::VIEW::FDPBDialog
• calculateAbsoluteCoordinates() : BALL::VIEW::Stage
• calculateBendEmpiricalForceConstant() : BALL::MMFF94StretchBend
• calculateBendEmpiricalReferenceAngle() : BALL::MMFF94StretchBend
• calculateDefaultBijection() : BALL::StructureMapper
• calculateDistances() : BALL::VIEW::AtomDistanceColorProcessor
• calculateEnergy() : BALL::GeneralizedBornModel
• calculateFactors_() : BALL::CanonicalMD
• calculateForceFieldEnergy() : BALL::VIEW::MolecularStructure
• calculateFragmentBijection() : BALL::StructureMapper
• calculateHBonds() : BALL::VIEW::MolecularStructure
• calculateMinSpacing() : BALL::HashGrid3< Item >
• calculatePEOE() : BALL::PartialChargeProcessor
• calculatePotential() : BALL::GeneralizedBornModel
• calculateRamachandranPlot() : BALL::VIEW::MolecularStructure
• calculateReactionFieldEnergy() : BALL::FDPB
• calculateRelativeCoordinates() : BALL::VIEW::Stage
• calculateRMSD() : BALL::AtomBijection , BALL::StructureMapper , BALL::VIEW::MolecularStructure
• calculateScore() : BALL::BuriedPolar , BALL::Lipophilic , BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss
• calculateSecondaryStructure() : BALL::VIEW::MolecularStructure
• calculateSolvationEnergy() : BALL::GeneralizedBornModel
• calculateSSSR() : BALL::RingPerceptionProcessor
• calculateStretchR0() : BALL::MMFF94StretchBend
• calculateTransformation() : BALL::StructureMapper
• CALCULATION__BOEHM : BALL::RotationalEntropyLoss
• CALCULATION__FROZEN_GLYCOSIDIC_BONDS : BALL::RotationalEntropyLoss
• CALCULATION__FULL_LJ_POTENTIAL : BALL::VanDerWaals
• CALCULATION__GLYCOSIDIC_BONDS : BALL::RotationalEntropyLoss
• CALCULATION__GLYCOSIDIC_CONTRIBUTION : BALL::RotationalEntropyLoss
• CALCULATION__ORIGINAL : BALL::RotationalEntropyLoss
• CALCULATION__SOFTENED_LJ_POTENTIAL_LOG : BALL::VanDerWaals
• CALCULATION__SOFTENED_LJ_POTENTIAL_SIMPLE : BALL::VanDerWaals
• CalculationMethod : BALL::RotationalEntropyLoss , BALL::VanDerWaals
• Camera() : BALL::VIEW::Camera
• cancelPressed() : BALL::VIEW::DockDialog
• canHandle() : BALL::PluginHandler , BALL::VIEW::MolecularFileDialog , BALL::VIEW::ModularWidget , BALL::VIEW::InputDevPluginHandler , BALL::VIEW::DatasetControl , BALL::VIEW::PyWidget , BALL::VIEW::TestFramework
• CanonicalMD() : BALL::CanonicalMD
• canonizePath() : BALL::FileSystem
• CASE_INSENSITIVE : BALL::String
• CASE_SENSITIVE : BALL::String
• cell_scaling_ : BALL::DSN6File
• CENTER_CAMERA : BALL::VIEW::CompositeMessage
• centerCamera() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
• Chain() : BALL::Chain
• ChainBuilder() : BALL::ChainBuilder
• CHANGED_COMPOSITE : BALL::VIEW::CompositeMessage
• CHANGED_COMPOSITE_HIERARCHY : BALL::VIEW::CompositeMessage
• changeLock() : BALL::VIEW::ServerWidget
• changeToUserHomeDir() : BALL::Directory
• CHARACTER_CLASS__ASCII_ALPHA : BALL::String
• CHARACTER_CLASS__ASCII_ALPHANUMERIC : BALL::String
• CHARACTER_CLASS__ASCII_FLOAT : BALL::String
• CHARACTER_CLASS__ASCII_LOWER : BALL::String
• CHARACTER_CLASS__ASCII_NUMERIC : BALL::String
• CHARACTER_CLASS__ASCII_UPPER : BALL::String
• CHARACTER_CLASS__QUOTES : BALL::String
• CHARACTER_CLASS__WHITESPACE : BALL::String
• CHARGE_DISTRIBUTION : BALL::FDPB::FDPB::Option , BALL::FDPB::FDPB::Default
• ChargeRuleProcessor() : BALL::ChargeRuleProcessor
• CharmmBend() : BALL::CharmmBend
• CharmmConfigurationDialog() : BALL::VIEW::CharmmConfigurationDialog
• CharmmEEF1() : BALL::CharmmEEF1
• CharmmFF() : BALL::CharmmFF
• CharmmImproperTorsion() : BALL::CharmmImproperTorsion
• CharmmNonBonded() : BALL::CharmmNonBonded
• CharmmStretch() : BALL::CharmmStretch
• CharmmTorsion() : BALL::CharmmTorsion
• CHECK_AFTER_ITERATIONS : BALL::FDPB::FDPB::Option , BALL::FDPB::FDPB::Default
• checkAtomType() : BALL::MMFF94
• checkHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkMenu() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure , BALL::VIEW::PyWidget , BALL::VIEW::Scene , BALL::VIEW::TestFramework , BALL::VIEW::DatasetController , BALL::VIEW::DisplayProperties , BALL::VIEW::DownloadPDBFile , BALL::VIEW::LabelDialog , BALL::VIEW::MolecularFileDialog , BALL::VIEW::PubChemDialog , BALL::VIEW::ModularWidget , BALL::VIEW::DatasetControl , BALL::VIEW::DockingController , BALL::VIEW::EditableScene , BALL::VIEW::FileObserver , BALL::VIEW::GeometricControl
• checkMenus() : BALL::VIEW::MainControl
• checkName() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectHeader() : BALL::PersistenceManager
• checkObjectPointerArrayHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectPointerArrayTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectPointerHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectReferenceHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkObjectTrailer() : BALL::PersistenceManager
• checkPrimitiveHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkPrimitiveTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkResidue() : BALL::VIEW::MolecularControl , BALL::VIEW::MolecularStructure
• checkStorableHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkStorableTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkStreamHeader() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkStreamTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• checkTrailer() : BALL::PersistenceManager , BALL::TextPersistenceManager , BALL::XDRPersistenceManager
• ChemScoreMetal() : BALL::ChemScoreMetal
• chi1 : BALL::Rotamer
• chi2 : BALL::Rotamer
• chi3 : BALL::Rotamer
• chi4 : BALL::Rotamer
• children : BALL::ExpressionParser::ExpressionParser::SyntaxTree
• ChiralClass : BALL::SmartsParser
• CHOOSE_FF : BALL::VIEW::MainControl
• CHOOSE_MODEL : BALL::PDBFile::PDBFile::Option , BALL::PDBFile::PDBFile::Default
• chooseAmberFF() : BALL::VIEW::MolecularStructure
• chooseCharmmFF() : BALL::VIEW::MolecularStructure
• chooseFile() : BALL::VIEW::FileObserver
• chooseMMFF94() : BALL::VIEW::MolecularStructure
• ClaverieParameter() : BALL::ClaverieParameter
• clean() : BALL::ReducedSurface
• clear() : BALL::Selector , BALL::ConnectedToPredicate , BALL::TAngle< T > , BALL::TBox3< T > , BALL::TCircle3< T > , BALL::TFFT1D< ComplexTraits > , BALL::TFFT2D< ComplexTraits > , BALL::TFFT3D< ComplexTraits > , BALL::TLine3< T > , BALL::TMatrix4x4< T > , BALL::PiecewiseFunction , BALL::PiecewisePolynomial , BALL::TPlane3< T > , BALL::TQuaternion< T > , BALL::RombergIntegrator< Function, DataType > , BALL::TSimpleBox3< T > , BALL::TSphere3< T > , BALL::TVector2< T > , BALL::TVector3< T > , BALL::TVector4< T > , BALL::AmberFF , BALL::AmberNonBonded , BALL::CharmmFF , BALL::CharmmNonBonded , BALL::ForceField , BALL::PeriodicBoundary , BALL::RuleEvaluator , BALL::SnapShot , BALL::SnapShotManager , BALL::MMFF94 , BALL::MMFF94NonBonded , BALL::MMFF94ParametersBase , BALL::MMFF94AtomTypeEquivalences , BALL::MMFF94StretchParameters , BALL::MMFF94BendParameters , BALL::MMFF94StretchBendParameters , BALL::MMFF94TorsionParameters , BALL::MMFF94PlaneParameters , BALL::MMFF94VDWParameters , BALL::MMFF94ESParameters , BALL::AtomTypes , BALL::CharmmEEF1 , BALL::CosineTorsion , BALL::ForceFieldParameters , BALL::LennardJones , BALL::Potential1210 , BALL::QuadraticAngleBend , BALL::QuadraticBondStretch , BALL::QuadraticImproperTorsion , BALL::ResidueTorsions , BALL::Templates , BALL::ShiftModel , BALL::ShiftModule , BALL::Spectrum< DataT, PeakT, PositionT > , BALL::BuriedPolar , BALL::CHPI , BALL::HydrogenBond , BALL::Lipophilic , BALL::ChemScoreMetal , BALL::NonpolarSolvation , BALL::PolarSolvation , BALL::RotationalEntropyLoss , BALL::SLICKEnergy , BALL::SLICKScore , BALL::ClaverieParameter , BALL::Pair6_12InteractionEnergyProcessor , BALL::Pair6_12RDFIntegrator , BALL::PairExpInteractionEnergyProcessor , BALL::PairExpRDFIntegrator , BALL::PCMCavFreeEnergyProcessor , BALL::PierottiCavFreeEnergyProcessor , BALL::ReissCavFreeEnergyProcessor , BALL::SolventDescriptor , BALL::SolventParameter , BALL::UhligCavFreeEnergyProcessor , BALL::AssignBondOrderProcessor , BALL::RadialDistributionFunction , BALL::RDFIntegrator , BALL::RDFParameter , BALL::RDFSection , BALL::ReducedSurface , BALL::RotamerLibrary , BALL::SmartsMatcher::SmartsMatcher::RecStructCore_ , BALL::SmartsMatcher::SmartsMatcher::RecStruct_ , BALL::SmartsParser , BALL::TriangulatedSurface , BALL::Directory , BALL::File , BALL::TCPTransfer , BALL::Timer , BALL::VIEW::ColorExtension2 , BALL::VIEW::MultiColorExtension , BALL::VIEW::ColorHSV , BALL::VIEW::ColorRGBA , BALL::VIEW::ColorUnit , BALL::VIEW::ColorUnitHue , BALL::VIEW::Dataset , BALL::VIEW::Vertex , BALL::VIEW::Vertex2 , BALL::VIEW::CompositeManager , BALL::VIEW::ConnectionObject , BALL::VIEW::GeometricObject , BALL::VIEW::MainControl , BALL::VIEW::ModularWidget , BALL::VIEW::Representation , BALL::VIEW::RepresentationManager , BALL::VIEW::ServerWidget , BALL::VIEW::Camera , BALL::VIEW::Stage , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::AddBackboneModel , BALL::VIEW::AddBallAndStickModel , BALL::VIEW::ColorProcessor , BALL::VIEW::HBondModelProcessor , BALL::VIEW::ModelProcessor , BALL::VIEW::AddSurfaceModel , BALL::VIEW::Box , BALL::VIEW::Disc , BALL::VIEW::Label , BALL::VIEW::GeometricControl , BALL::VIEW::VRMLRenderer , BALL::VIEW::Line , BALL::VIEW::Mesh , BALL::VIEW::MultiLine , BALL::VIEW::Point , BALL::VIEW::SimpleBox , BALL::VIEW::Sphere , BALL::VIEW::Tube , BALL::VIEW::TwoColoredLine , BALL::VIEW::TwoColoredTube , BALL::VIEW::GLDisplayList , BALL::VIEW::GLRenderer , BALL::VIEW::POVRenderer , BALL::VIEW::Renderer , BALL::VIEW::STLRenderer , BALL::VIEW::MeshBuffer , BALL::LogStream , BALL::Client , BALL::VIEW::PyWidget , BALL::VIEW::Scene , BALL::Composite , BALL::MolecularInformation , BALL::MoleculeObjectCreator , BALL::Object , BALL::ObjectCreator , BALL::NamedProperty , BALL::PropertyManager , BALL::Selectable , BALL::PreciseTime , BALL::TimeStamp , BALL::Bit , BALL::BitVector , BALL::TContour< T > , BALL::TContourLine< T > , BALL::TContourSurface< T > , BALL::HashGridBox3< Item > , BALL::HashGrid3< Item > , BALL::HashSet< Key > , BALL::Options , BALL::Quadruple< T1, T2, T3, T4 > , BALL::TRegularData1D< ValueType > , BALL::TRegularData2D< ValueType > , BALL::TRegularData3D< ValueType > , BALL::RegularExpression , BALL::String , BALL::Substring , BALL::Triple< T1, T2, T3 > , BALL::ComposedEnergyProcessor , BALL::EnergyProcessor , BALL::DCDFile , BALL::DSN6File , BALL::INIFile , BALL::LineBasedFile , BALL::NMRStarFile , BALL::Parameters , BALL::ParameterSection , BALL::PDBFile , BALL::PDBInfo , BALL::ResourceFile , BALL::TrajectoryFile , BALL::TRRFile , BALL::Atom , BALL::AtomContainer , BALL::Bond , BALL::Expression , BALL::ExpressionParser::ExpressionParser::SyntaxTree , BALL::ExpressionPredicate , BALL::ExpressionTree , BALL::NucleicAcid , BALL::Nucleotide , BALL::PDBAtom , BALL::Protein , BALL::Element , BALL::PTE_ , BALL::Residue , BALL::SecondaryStructure
• clearBuffer() : BALL::VIEW::MeshBuffer , BALL::SnapShotManager
• clearClipboard() : BALL::VIEW::MolecularControl
• clearComposites() : BALL::VIEW::AddSurfaceModel , BALL::VIEW::AtomBondModelBaseProcessor , BALL::VIEW::ModelProcessor
• clearData() : BALL::VIEW::MainControl
• clearGeometricObjects() : BALL::VIEW::Representation
• clearKeySequences() : BALL::VIEW::ShortcutRegistry
• clearNormals() : BALL::TSurface< T >
• clearProperty() : BALL::PropertyManager
• clearSelection() : BALL::VIEW::MainControl
• clearSelector() : BALL::VIEW::MolecularControl
• ClearShiftProcessor() : BALL::ClearShiftProcessor
• clearTriangles() : BALL::TSurface< T >
• clearUsedAtoms_() : BALL::VIEW::AtomBondModelBaseProcessor
• clearVertices() : BALL::TSurface< T >
• Client() : BALL::Client
• ClippingDialog() : BALL::VIEW::ClippingDialog
• clone() : BALL::Composite
• cloneBond() : BALL::Atom
• close() : BALL::File , BALL::ResourceFile
• closeClicked() : BALL::VIEW::DockResultDialog
• clusterRings() : BALL::RingClusterer
• collapseAll() : BALL::VIEW::MolecularControl
• ColorExtension2() : BALL::VIEW::ColorExtension2
• ColorHSV() : BALL::VIEW::ColorHSV
• coloringMuteableByDisplayProperties() : BALL::VIEW::ModelInformation
• ColoringSettingsDialog() : BALL::VIEW::ColoringSettingsDialog
• ColorMap() : BALL::VIEW::ColorMap
• colorPressed() : BALL::VIEW::LightSettings , BALL::VIEW::StageSettings
• ColorProcessor() : BALL::VIEW::ColorProcessor
• ColorRGBA() : BALL::VIEW::ColorRGBA
• ColorUnit() : BALL::VIEW::ColorUnit
• ColorUnitHue() : BALL::VIEW::ColorUnitHue
• Command : BALL::Client
• COMMAND__SEND_OBJECT : BALL::Client
• COMMAND__UNKOWN : BALL::Client
• compact() : BALL::Atom
• Comparator() : BALL::Comparator< T >
• compare() : BALL::Object
• Compare_() : BALL::DockResult::DockResult::Compare_ , BALL::VIEW::DockResultDialog::DockResultDialog::Compare_
• compareChains() : BALL::ChainBuilder
• CompareMode : BALL::String
• compareRingsystems() : BALL::MoleculeAssembler
• component_grouping_ : BALL::SmartsParser
• component_no_ : BALL::SmartsParser::SmartsParser::SPNode , BALL::SmartsParser
• ComposedEnergyProcessor() : BALL::ComposedEnergyProcessor
• Composite() : BALL::Composite
• composite_iterator_ : BALL::CompositeIteratorTraits
• CompositeIteratorTraits() : BALL::CompositeIteratorTraits
• CompositeManager() : BALL::VIEW::CompositeManager
• CompositeMessage() : BALL::VIEW::CompositeMessage
• CompositeMessageType : BALL::VIEW::CompositeMessage
• compositeProperties() : BALL::VIEW::MolecularControl
• compositesAreLocked() : BALL::VIEW::MainControl
• CompositeSet : BALL::VIEW::ColorProcessor
• compute() : BALL::ReducedSurface , BALL::SolventExcludedSurface , BALL::TriangulatedSAS , BALL::RelNumberOfRotatableSingleBonds , BALL::SolventAccessibleSurface
• compute_() : BALL::SecondaryStructureProcessor
• COMPUTE_ALSO_CONNECTIVITY : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• COMPUTE_ALSO_NON_OPTIMAL_SOLUTIONS : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• COMPUTE_AREA : BALL::NumericalSAS::NumericalSAS::Option , BALL::NumericalSAS::NumericalSAS::Default
• COMPUTE_SURFACE : BALL::NumericalSAS::NumericalSAS::Option , BALL::NumericalSAS::NumericalSAS::Default
• COMPUTE_SURFACE_MAP : BALL::NumericalSAS::NumericalSAS::Default , BALL::NumericalSAS::NumericalSAS::Option
• COMPUTE_SURFACE_PER_ATOM : BALL::NumericalSAS::NumericalSAS::Option , BALL::NumericalSAS::NumericalSAS::Default
• COMPUTE_VOLUME : BALL::NumericalSAS::NumericalSAS::Option , BALL::NumericalSAS::NumericalSAS::Default
• computeNextSolution() : BALL::AssignBondOrderProcessor
• computeSize() : BALL::VIEW::FrameBufferFormat
• computeTopology() : BALL::TContourSurface< T >::TContourSurface::Cube
• computeVirtualHydrogens_() : BALL::AssignBondOrderProcessor
• Conformation : BALL::ConformationSet
• conformation_set_ : BALL::DockResult , BALL::VIEW::DockingFinishedMessage
• ConjugateGradientMinimizer() : BALL::ConjugateGradientMinimizer
• connect() : BALL::Client
• ConnectionObject() : BALL::VIEW::ConnectionObject
• CONNECTIVITY_CUTOFF : BALL::AssignBondOrderProcessor::AssignBondOrderProcessor::Option
• ConnectivityBase() : BALL::ConnectivityBase
• CONST : BALL::SLICKEnergy::SLICKEnergy::Option , BALL::SLICKEnergy::SLICKEnergy::Default , BALL::SLICKScore::SLICKScore::Default , BALL::SLICKScore::SLICKScore::Option
• CONSTANT : BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Option , BALL::UhligCavFreeEnergyProcessor::UhligCavFreeEnergyProcessor::Default
• constants_ : BALL::ParsedFunction< arg >
• ConstBidirectionalIterator() : BALL::ConstBidirectionalIterator< Container, DataType, Position, Traits >
• ConstBoxIterator : BALL::HashGridBox3< Item >
• ConstDataIterator : BALL::HashGridBox3< Item >
• ConstForwardIterator() : BALL::ConstForwardIterator< Container, DataType, Position, Traits >
• ConstIterator : BALL::Spectrum< DataT, PeakT, PositionT > , BALL::Gradient , BALL::PyCompositeList , BALL::PyColorRGBAVector , BALL::ExpressionParser::ExpressionParser::SyntaxTree , BALL::List< Value > , BALL::TRegularData1D< ValueType > , BALL::StringHashMap< Value > , BALL::TRegularData2D< ValueType > , BALL::PyIndexList , BALL::PeakList< PT > , BALL::Enumerator< Container, SiteIterator, Variant > , BALL::TRegularData3D< ValueType > , BALL::AtomVector , BALL::PyDatasetVector
• ConstReverseIterator : BALL::Gradient
• construct() : BALL::Peptides::PeptideBuilder
• constructRS() : BALL::RSConstructor
• containsSelection() : BALL::Composite
• ContentType : BALL::JCAMPFile
• CONTINUE : BALL::Processor
• CONTROL_WINDOW : BALL::VIEW::Scene
• convertObject() : BALL::MoleculeObjectCreator , BALL::ObjectCreator
• coordinateSystemEnabled() : BALL::VIEW::Stage
• CoordinateType : BALL::TRegularData2D< ValueType > , BALL::TRegularData1D< ValueType > , BALL::TRegularData3D< ValueType >
• copy() : BALL::File , BALL::VIEW::MolecularControl
• copyTo() : BALL::File
• corr_par_ : BALL::ShiftedLVMMMinimizer
• CORRECTION_PARAMETER : BALL::ShiftedLVMMMinimizer::ShiftedLVMMMinimizer::Option
• CorrectionParameter : BALL::ShiftedLVMMMinimizer
• CosineTorsion() : BALL::CosineTorsion
• COULOMB : BALL::FDPB::FDPB::Boundary
• count() : BALL::Composite
• countAtomContainers() : BALL::AtomContainer
• countAtoms() : BALL::System , BALL::AtomContainer
• countBonds() : BALL::AtomContainer , BALL::Atom
• countChains() : BALL::Protein , BALL::System
• countChildren() : BALL::ResourceEntry
• countComponents() : BALL::ForceField
• countDescendants() : BALL::ResourceEntry , BALL::Composite
• countDirectories() : BALL::Directory
• countEdges() : BALL::SmartsParser::SmartsParser::SPNode
• countFields() : BALL::String
• countFieldsQuoted() : BALL::String
• countFiles() : BALL::Directory
• countFragments() : BALL::System
• countInstances_() : BALL::Embeddable
• countInterBonds() : BALL::AtomContainer
• countIntraBonds() : BALL::AtomContainer
• countItems() : BALL::VIEW::MolecularControl , BALL::Directory
• countMolecules() : BALL::System
• countNamedProperties() : BALL::PropertyManager
• countNonEmptyBoxes() : BALL::HashGrid3< Item >
• countNucleicAcids() : BALL::System
• countNucleotides() : BALL::System , BALL::NucleicAcid
• countPDBAtoms() : BALL::SecondaryStructure , BALL::Residue , BALL::Chain , BALL::Protein
• countProperties() : BALL::SmartsParser::SmartsParser::SPAtom , BALL::PropertyManager
• countProteins() : BALL::System
• countRealValences() : BALL::SmartsParser::SmartsParser::SPAtom
• countRecord() : BALL::PDBFile
• countRecordFields() : BALL::PDBFile
• countRecords() : BALL::PDBFile
• countResidues() : BALL::Chain , BALL::SecondaryStructure , BALL::System , BALL::Protein
• counts_format_ : BALL::MOLFile
• countSecondaryStructures() : BALL::Chain , BALL::System , BALL::Protein
• countSubexpressions() : BALL::RegularExpression
• countValue() : BALL::BitVector
• countVariants() : BALL::Enumerator< Container, SiteIterator, Variant >
• Cp_ref : BALL::CharmmEEF1::CharmmEEF1::Values
• crd : BALL::MMFF94AtomType
• create() : BALL::Factory< T > , BALL::Directory
• createAtom() : BALL::SmartsParser
• createBond() : BALL::Atom , BALL::Bond , BALL::Atom
• createCombination() : BALL::Enumerator< Container, SiteIterator, Variant >
• createContourLine() : BALL::TContourLine< T >
• createCoordinateSystem() : BALL::VIEW::Scene
• createCoordinateSystemAtOrigin() : BALL::VIEW::Scene
• createDisk() : BALL::TriangulatedSurface
• createFPSInfo_() : BALL::VIEW::Scene
• createGeometricObjects() : BALL::VIEW::AddBallAndStickModel , BALL::VIEW::AddSurfaceModel , BALL::VIEW::ModelProcessor , BALL::VIEW::AddBackboneModel , BALL::VIEW::LabelModel , BALL::VIEW::AtomBondModelBaseProcessor
• createGridFromDistance() : BALL::VIEW::MolecularStructure
• createMap() : BALL::VIEW::ColorMap
• createMapJet() : BALL::VIEW::ColorMap
• createMenuEntries() : BALL::VIEW::DockResultController , BALL::VIEW::VectorGridController , BALL::VIEW::DatasetController , BALL::VIEW::TrajectoryController , BALL::VIEW::RegularData3DController , BALL::VIEW::RaytraceableGridController
• CreateMethod : BALL::PersistenceManager , BALL::ShiftModel
• CreateMethodMap : BALL::ShiftModel
• createObject() : BALL::PersistenceManager
• createPlot() : BALL::VIEW::RegularData1DWidget , BALL::VIEW::RegularData2DWidget
• createRepresentation() : BALL::VIEW::RepresentationManager , BALL::VIEW::MolecularControl
• createRepresentationMode() : BALL::VIEW::DisplayProperties
• createResidue_() : BALL::Peptides::PeptideBuilder
• CreateSpectrumProcessor() : BALL::CreateSpectrumProcessor
• createTemporaryFilename() : BALL::File
• createTube() : BALL::TriangulatedSurface
• createVoid() : BALL::Factory< T >
• CreationMethod : BALL::Expression
• crystal_dimension_ : BALL::DSN6File
• CubicFunction() : BALL::CubicFunction< Function, DataType >
• curr_num_of_vect_pairs_ : BALL::StrangLBFGSMinimizer
• curr_number_of_cols_ : BALL::ShiftedLVMMMinimizer
• CURRENT_DIRECTORY : BALL::FileSystem
• current_energy_ : BALL::EnergyMinimizer
• current_grad_ : BALL::EnergyMinimizer
• current_parser_ : BALL::SmartsParser
• CURRENT_TIME : BALL::MolecularDynamics::MolecularDynamics::Option
• currentStackPage() : BALL::VIEW::PreferencesEntry
• customEvent() : BALL::VIEW::Scene
• cut() : BALL::TriangulatedSurface , BALL::VIEW::MolecularControl
• cutlo_ : BALL::EnergyMinimizer