, including all inherited members.
adapt_char_ | BALL::TRRFile | [protected] |
adapt_double_ | BALL::TRRFile | [protected] |
adapt_float_ | BALL::TRRFile | [protected] |
adapt_size_ | BALL::TRRFile | [protected] |
append(const SnapShot &snapshot) | BALL::TRRFile | [virtual] |
box1_ | BALL::TRRFile | [protected] |
box2_ | BALL::TRRFile | [protected] |
box3_ | BALL::TRRFile | [protected] |
clear() | BALL::TRRFile | [virtual] |
close() | BALL::File | |
copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | [static] |
copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File | |
createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | [static] |
disableTransformation(Transformation transformation) | BALL::File | [static] |
enableTransformation(Transformation transformation) | BALL::File | [static] |
File() | BALL::File | |
File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File | |
flushToDisk(const std::vector< SnapShot > &buffer) | BALL::TRRFile | [virtual] |
getBoundingBoxX() const | BALL::TRRFile | |
getBoundingBoxY() const | BALL::TRRFile | |
getBoundingBoxZ() const | BALL::TRRFile | |
getFileStream() | BALL::File | |
getName() const | BALL::File | |
getNumberOfAtoms() const | BALL::TrajectoryFile | |
getNumberOfSnapShots() const | BALL::TrajectoryFile | |
getOpenMode() const | BALL::File | |
getOriginalName() const | BALL::File | |
getPrecision() const | BALL::TRRFile | |
getSize() | BALL::File | |
getSize(String name) | BALL::File | [static] |
getTimestep() const | BALL::TRRFile | |
getTransformationManager() | BALL::File | |
getTransformationManager() const | BALL::File | |
getType(String name, bool trace_link) | BALL::File | [static] |
getType(bool trace_link) const | BALL::File | |
has_forces_ | BALL::TRRFile | [protected] |
has_velocities_ | BALL::TRRFile | [protected] |
hasForces() const | BALL::TRRFile | |
hasVelocities() const | BALL::TRRFile | |
header_ | BALL::TRRFile | [protected] |
init() | BALL::TRRFile | [virtual] |
is_open_ | BALL::File | [protected] |
is_temporary_ | BALL::File | [protected] |
isAccessible(String name) | BALL::File | [static] |
isAccessible() const | BALL::File | |
isCanonized() const | BALL::File | |
isClosed() const | BALL::File | |
isExecutable(String name) | BALL::File | [static] |
isExecutable() const | BALL::File | |
isOpen() const | BALL::File | |
isReadable(String name) | BALL::File | [static] |
isReadable() const | BALL::File | |
isTransformationEnabled(Transformation transformation) | BALL::File | [static] |
isValid() const | BALL::File | |
isWritable(String name) | BALL::File | [static] |
isWritable() const | BALL::File | |
MODE_APP | BALL::File | [static] |
MODE_ATE | BALL::File | [static] |
MODE_BINARY | BALL::File | [static] |
MODE_IN | BALL::File | [static] |
MODE_OUT | BALL::File | [static] |
MODE_TRUNC | BALL::File | [static] |
move(const String &source_name, const String &destination_name) | BALL::File | [static] |
moveTo(const String &destination_name) | BALL::File | |
name_ | BALL::File | [protected] |
number_of_atoms_ | BALL::TrajectoryFile | [protected] |
number_of_snapshots_ | BALL::TrajectoryFile | [protected] |
open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File | |
open_mode_ | BALL::File | [protected] |
OpenMode typedef | BALL::File | |
operator!=(const File &file) const | BALL::File | |
operator=(const TRRFile &file) | BALL::TRRFile | [private] |
operator==(const TRRFile &file) const | BALL::TRRFile | |
BALL::TrajectoryFile::operator==(const TrajectoryFile &file) const | BALL::TrajectoryFile | |
BALL::File::operator==(const File &file) const | BALL::File | |
operator>>(SnapShotManager &ssm) | BALL::TRRFile | [virtual] |
original_name_ | BALL::File | [protected] |
precision_ | BALL::TRRFile | [protected] |
read(SnapShot &snapshot) | BALL::TRRFile | [virtual] |
readHeader() | BALL::TrajectoryFile | [virtual] |
readNextHeader(TRRHeader &header) | BALL::TRRFile | [virtual] |
registerTransformation(const String &pattern, const String &exec) | BALL::File | [static] |
remove(String name) | BALL::File | [static] |
remove() | BALL::File | |
rename(String old_path, String new_path) | BALL::File | [static] |
renameTo(const String &new_path) | BALL::File | |
reopen() | BALL::File | |
reopen(File::OpenMode open_mode) | BALL::File | |
setBoundingBox(const Vector3 &x, const Vector3 &y, const Vector3 &z) | BALL::TRRFile | |
setForceStorage(bool storage) | BALL::TRRFile | |
setName(const String &name) | BALL::File | |
setPrecision(const Size precision) | BALL::TRRFile | |
setTimestep(float timestep) | BALL::TRRFile | |
setVelocityStorage(bool storage) | BALL::TRRFile | |
timestep_ | BALL::TRRFile | [protected] |
timestep_index_ | BALL::TRRFile | [protected] |
TrajectoryFile() | BALL::TrajectoryFile | |
TrajectoryFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::TrajectoryFile | |
Transformation enum name | BALL::File | |
TRANSFORMATION__EXEC enum value | BALL::File | |
TRANSFORMATION__FILTER enum value | BALL::File | |
TRANSFORMATION__URL enum value | BALL::File | |
TRANSFORMATION_EXEC_PREFIX | BALL::File | [static] |
TRANSFORMATION_FILE_PREFIX | BALL::File | [static] |
TRANSFORMATION_FTP_PREFIX | BALL::File | [static] |
TRANSFORMATION_HTTP_PREFIX | BALL::File | [static] |
transformation_manager_ | BALL::File | [protected, static] |
transformation_methods_ | BALL::File | [protected, static] |
TRRFile() | BALL::TRRFile | |
TRRFile(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::TRRFile | |
truncate(String path, Size size=0) | BALL::File | [static] |
truncate(Size size=0) | BALL::File | |
Type enum name | BALL::File | |
TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File | |
TYPE__CHAR_SPECIAL_FILE enum value | BALL::File | |
TYPE__DIRECTORY enum value | BALL::File | |
TYPE__FIFO_SPECIAL_FILE enum value | BALL::File | |
TYPE__REGULAR_FILE enum value | BALL::File | |
TYPE__SOCKET enum value | BALL::File | |
TYPE__SYMBOLIC_LINK enum value | BALL::File | |
TYPE__UNKNOWN enum value | BALL::File | |
unregisterTransformation(const String &pattern) | BALL::File | [static] |
writeHeader() | BALL::TrajectoryFile | [virtual] |
writeNextHeader(const TRRHeader &header) | BALL::TRRFile | [virtual] |
~File() | BALL::File | [virtual] |
~TrajectoryFile() | BALL::TrajectoryFile | [virtual] |
~TRRFile() | BALL::TRRFile | [virtual] |