BALL::Composite Class Reference
[Miscellaneous]

#include <BALL/CONCEPT/composite.h>

Inheritance diagram for BALL::Composite:

Classes
class	AncestorIteratorTraits
class	ChildCompositeIteratorTraits
class	CompositeIteratorTraits
Public Types
typedef ForwardIterator < Composite, Composite, Composite *, AncestorIteratorTraits >	AncestorIterator
typedef ConstForwardIterator < Composite, Composite, Composite *, AncestorIteratorTraits >	AncestorConstIterator
typedef BidirectionalIterator < Composite, Composite, Composite *, ChildCompositeIteratorTraits >	ChildCompositeIterator
typedef ConstBidirectionalIterator < Composite, Composite, Composite *, ChildCompositeIteratorTraits >	ChildCompositeConstIterator
typedef std::reverse_iterator < ChildCompositeIterator >	ChildCompositeReverseIterator
typedef std::reverse_iterator < ChildCompositeConstIterator >	ChildCompositeConstReverseIterator
typedef BidirectionalIterator < Composite, Composite, Composite *, CompositeIteratorTraits >	CompositeIterator
typedef ConstBidirectionalIterator < Composite, Composite, Composite *, CompositeIteratorTraits >	CompositeConstIterator
typedef std::reverse_iterator < CompositeIterator >	CompositeReverseIterator
typedef std::reverse_iterator < CompositeConstIterator >	CompositeConstReverseIterator
Type Definitions and Enums

enum	StampType { MODIFICATION = 1, SELECTION = 2, BOTH = 3 }
typedef UnaryPredicate< Composite >	KernelPredicateType
Public Member Functions
AncestorIterator	beginAncestor ()
AncestorIterator	endAncestor ()
AncestorConstIterator	beginAncestor () const
AncestorConstIterator	endAncestor () const
ChildCompositeIterator	beginChildComposite ()
ChildCompositeIterator	endChildComposite ()
ChildCompositeConstIterator	beginChildComposite () const
ChildCompositeConstIterator	endChildComposite () const
ChildCompositeReverseIterator	rbeginChildComposite ()
ChildCompositeReverseIterator	rendChildComposite ()
ChildCompositeConstReverseIterator	rbeginChildComposite () const
ChildCompositeConstReverseIterator	rendChildComposite () const
CompositeIterator	beginComposite ()
CompositeIterator	endComposite ()
CompositeConstIterator	beginComposite () const
CompositeConstIterator	endComposite () const
CompositeReverseIterator	rbeginComposite ()
CompositeReverseIterator	rendComposite ()
CompositeConstReverseIterator	rbeginComposite () const
CompositeConstReverseIterator	rendComposite () const
void	deleteChildrenList_ (std::list< Composite * > &composites)
Construction and Destruction

	Composite ()
	Composite (const Composite &composite, bool deep=true)
virtual	~Composite ()
virtual void	clear ()
virtual void	destroy ()
void	destroy (bool virtual_destroy)
void *	clone (Composite &root) const
Persistence

virtual void	persistentWrite (PersistenceManager &pm, const char *name=0) const throw (Exception::GeneralException)
virtual void	persistentRead (PersistenceManager &pm) throw (Exception::GeneralException)
Predicates

bool	operator== (const Composite &composite) const
bool	operator!= (const Composite &composite) const
bool	isEmpty () const
bool	isRoot () const
bool	isRootOf (const Composite &composite) const
bool	isInterior () const
bool	hasChild () const
bool	isChildOf (const Composite &composite) const
bool	isFirstChild () const
bool	isFirstChildOf (const Composite &composite) const
bool	isLastChild () const
bool	isLastChildOf (const Composite &composite) const
bool	hasParent () const
bool	isParentOf (const Composite &composite) const
bool	hasSibling () const
bool	isSiblingOf (const Composite &composite) const
bool	hasPreviousSibling () const
bool	isPreviousSiblingOf (const Composite &composite) const
bool	hasNextSibling () const
bool	isNextSiblingOf (const Composite &composite) const
bool	isDescendantOf (const Composite &composite) const
template<typename T >
bool	hasAncestor (const T &dummy) const
bool	isAncestorOf (const Composite &composite) const
bool	isRelatedWith (const Composite &composite) const
bool	isHomomorph (const Composite &composite) const
bool	containsSelection () const
Debugging and Diagnostics

virtual bool	isValid () const
virtual void	dump (std::ostream &s=std::cout, Size depth=0) const
Application and Hosting

void	host (Visitor< Composite > &visitor) throw (Exception::GeneralException)
template<typename T >
bool	applyAncestor (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyChild (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyDescendantPreorder (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyDescendantPostorder (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyDescendant (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyPreorder (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyPostorder (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	apply (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyLevel (UnaryProcessor< T > &processor, long level) throw (Exception::GeneralException)
Static Public Attributes
static UnaryProcessor< Composite >	DEFAULT_PROCESSOR
static KernelPredicateType	DEFAULT_UNARY_PREDICATE
Private Member Functions
Size	getHeight_ (Size size, Size &max_height) const
Size	countDescendants_ () const
void	clone_ (Composite &parent, Composite &stack) const
template<typename T >
bool	applyLevelNostart_ (UnaryProcessor< T > &processor, long level) throw (Exception::GeneralException)
template<typename T >
bool	applyChildNostart_ (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyPreorderNostart_ (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyDescendantPreorderNostart_ (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
template<typename T >
bool	applyDescendantPostorderNostart_ (UnaryProcessor< T > &processor) throw (Exception::GeneralException)
void	updateSelection_ ()
void	determineSelection_ ()
void	select_ (bool update_parent=true)
void	deselect_ (bool update_parent=true)
Private Attributes
Size	number_of_children_
Composite *	parent_
Composite *	previous_
Composite *	next_
Composite *	first_child_
Composite *	last_child_
unsigned char	properties_
bool	contains_selection_
Size	number_of_selected_children_
Size	number_of_children_containing_selection_
TimeStamp	selection_stamp_
TimeStamp	modification_stamp_
Friends
class	AncestorIteratorTraits
class	ChildCompositeIteratorTraits
class	CompositeIteratorTraits
Modifying and Accessing the Tree

void	set (const Composite &composite, bool deep=true)
Composite &	operator= (const Composite &composite)
void	get (Composite &composite, bool deep=true) const
Size	getDegree () const
Size	count (const KernelPredicateType &predicate) const
Size	countDescendants () const
Size	getPathLength (const Composite &composite) const
Size	getDepth () const
Size	getHeight () const
Composite &	getRoot ()
const Composite &	getRoot () const
Composite *	getLowestCommonAncestor (const Composite &composite)
const Composite *	getLowestCommonAncestor (const Composite &composite) const
template<typename T >
T *	getAncestor (const T &)
template<typename T >
const T *	getAncestor (const T &) const
template<typename T >
T *	getPrevious (const T &)
template<typename T >
const T *	getPrevious (const T &dummy) const
template<typename T >
T *	getNext (const T &)
template<typename T >
const T *	getNext (const T &dummy) const
Composite *	getParent ()
const Composite *	getParent () const
Composite *	getChild (Index index)
const Composite *	getChild (Index index) const
Composite *	getSibling (Index index)
const Composite *	getSibling (Index index) const
Composite *	getFirstChild ()
const Composite *	getFirstChild () const
Composite *	getLastChild ()
const Composite *	getLastChild () const
const PreciseTime &	getModificationTime () const
const PreciseTime &	getSelectionTime () const
void	stamp (StampType stamp=BOTH)
void	prependChild (Composite &composite)
void	appendChild (Composite &composite)
void	insertBefore (Composite &composite)
void	insertAfter (Composite &composite)
void	spliceBefore (Composite &composite)
void	spliceAfter (Composite &composite)
void	splice (Composite &composite)
bool	removeChild (Composite &child)
Size	removeSelected ()
Size	removeUnselected ()
void	replace (Composite &composite)
void	swap (Composite &composite)
virtual void	select ()
virtual void	deselect ()
static bool	insertParent (Composite &parent, Composite &first, Composite &last, bool destroy_parent=true)

Detailed Description

Composite Class. This class implements a variant of the composite design pattern. A Composite may contain an arbitrary number of other composites, thus forming a tree. All BALL kernel classes are derived from Composite. This provides a unique interface for all kernel classes.

: The composite class provides a selection mechanism that allows hierarchical selection and deselection of arbitrary subtrees. The time of the last selection/deselection operation is stored as well as the time of the last modification operation in time stamps that can be accessed via getModificationTime and getSelectionTime . Selecting or deselecting a Composite automatically selects or deselects all its children (recursively!). Selecting or deselecting all children of a node deselects their parent as well. Selection information is propagated upwards in the tree.

: Composites are persistent objects.

Definition at line 69 of file composite.h.

Member Typedef Documentation

typedef ConstForwardIterator<Composite, Composite, Composite*, AncestorIteratorTraits> BALL::Composite::AncestorConstIterator

Definition at line 945 of file composite.h.

typedef ForwardIterator<Composite, Composite, Composite*, AncestorIteratorTraits> BALL::Composite::AncestorIterator

Definition at line 932 of file composite.h.

typedef ConstBidirectionalIterator<Composite, Composite, Composite *, ChildCompositeIteratorTraits> BALL::Composite::ChildCompositeConstIterator

Definition at line 1069 of file composite.h.

typedef std::reverse_iterator<ChildCompositeConstIterator> BALL::Composite::ChildCompositeConstReverseIterator

Definition at line 1099 of file composite.h.

typedef BidirectionalIterator<Composite, Composite, Composite *, ChildCompositeIteratorTraits> BALL::Composite::ChildCompositeIterator

Definition at line 1052 of file composite.h.

typedef std::reverse_iterator<ChildCompositeIterator> BALL::Composite::ChildCompositeReverseIterator

Definition at line 1085 of file composite.h.

typedef ConstBidirectionalIterator<Composite, Composite, Composite*, CompositeIteratorTraits> BALL::Composite::CompositeConstIterator

Definition at line 1356 of file composite.h.

typedef std::reverse_iterator<CompositeConstIterator> BALL::Composite::CompositeConstReverseIterator

Definition at line 1382 of file composite.h.

typedef BidirectionalIterator<Composite, Composite, Composite*, CompositeIteratorTraits> BALL::Composite::CompositeIterator

Definition at line 1349 of file composite.h.

typedef std::reverse_iterator<CompositeIterator> BALL::Composite::CompositeReverseIterator

Definition at line 1369 of file composite.h.

typedef UnaryPredicate<Composite> BALL::Composite::KernelPredicateType

Composite predicate type. This type declares a predicate operating on composites. As it is used as a predicate for all kernel classes, it is named KernelPredicateType.

Definition at line 86 of file composite.h.

Member Enumeration Documentation

enum BALL::Composite::StampType

Time stamp type.

Enumerator:

MODIFICATION
SELECTION
BOTH

Definition at line 91 of file composite.h.

Constructor & Destructor Documentation

BALL::Composite::Composite ( )

Default constructor. This constructor creates an empty composite object.

BALL::Composite::Composite	(	const Composite &	composite,
		bool	deep = `true`
	)

Copy constructor. Creates a copy of a composite. Deep copies include the whole composite tree, shallow copies contain anly a single composite.

Parameters:

	composite	the composite to be cloned (the root of the tree in the case of a deep copy)
	deep	make a deep copy (true) or shallow copy (false)

virtual BALL::Composite::~Composite ( ) [virtual]

Destructor. The destructor calls destroy to remove the composite from potential tree structures. It also recursively destructs all children of the composite.

Member Function Documentation

void BALL::Composite::appendChild ( Composite & composite )

Insert a composite as the last child of this composite. Updates the modification time stamp. Note that this method alters the composite tree from which composite is taken, if there is such a tree.

See also:: stamp

Parameters:

composite

the composite to be inserted

template<typename T >

BALL_INLINE bool BALL::Composite::apply ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to the node and its subtree. applyPreorder is used.

See also:: applyPreorder

Returns:: true if the processor could be applied.

Definition at line 1691 of file composite.h.

template<typename T >

bool BALL::Composite::applyAncestor ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to all ancestors of this node.

Returns:: true if the processor could be applied.

Definition at line 1454 of file composite.h.

template<typename T >

bool BALL::Composite::applyChild ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to all children of this node.

Returns:: true if the processor could be applied.

Definition at line 1481 of file composite.h.

template<typename T >

bool BALL::Composite::applyChildNostart_ ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline, private]

Definition at line 1488 of file composite.h.

template<typename T >

bool BALL::Composite::applyDescendant ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to all descendents of this node. The node itself is not processed. applyDescendantPreorder is used.

See also:: applyDescendantPreorder

Returns:: true if the processor could be applied.

Definition at line 1676 of file composite.h.

template<typename T >

bool BALL::Composite::applyDescendantPostorder ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to all descendents of this node. The node itself is not processed. The root of a subtree is accessed after the nodes in its left and right subtree.

Returns:: true if the processor could be applied.

Definition at line 1547 of file composite.h.

template<typename T >

bool BALL::Composite::applyDescendantPostorderNostart_ ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline, private]

Definition at line 1554 of file composite.h.

template<typename T >

bool BALL::Composite::applyDescendantPreorder ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to all descendents of this node. The node itself is not processed. The root of a subtree is accessed before the nodes in its left and right subtree.

Returns:: true if the processor could be applied.

Definition at line 1511 of file composite.h.

template<typename T >

bool BALL::Composite::applyDescendantPreorderNostart_ ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline, private]

Definition at line 1518 of file composite.h.

template<typename T >

bool BALL::Composite::applyLevel	(	UnaryProcessor< T > &	processor,
		long	level
	)			throw (Exception::GeneralException) `[inline]`

Apply a processor to the node and its siblings.

Returns:: true if the processor could be applied.

Definition at line 1600 of file composite.h.

template<typename T >

bool BALL::Composite::applyLevelNostart_	(	UnaryProcessor< T > &	processor,
		long	level
	)			throw (Exception::GeneralException) `[inline, private]`

Definition at line 1607 of file composite.h.

template<typename T >

bool BALL::Composite::applyPostorder ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to the node and its subtree. The root of a subtree is accessed after the nodes in its left and right subtree.

Returns:: true if the processor could be applied.

Definition at line 1584 of file composite.h.

template<typename T >

bool BALL::Composite::applyPreorder ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline]

Apply a processor to the node and its subtree. The root of a subtree is accessed before the nodes in its left and right subtree.

Returns:: true if the processor could be applied.

Definition at line 1683 of file composite.h.

template<typename T >

bool BALL::Composite::applyPreorderNostart_ ( UnaryProcessor< T > & processor ) throw (Exception::GeneralException) [inline, private]

Definition at line 1648 of file composite.h.

AncestorConstIterator BALL::Composite::beginAncestor ( ) const [inline]

Definition at line 947 of file composite.h.

AncestorIterator BALL::Composite::beginAncestor ( ) [inline]

Definition at line 934 of file composite.h.

ChildCompositeConstIterator BALL::Composite::beginChildComposite ( ) const [inline]

Definition at line 1071 of file composite.h.

ChildCompositeIterator BALL::Composite::beginChildComposite ( ) [inline]

Definition at line 1054 of file composite.h.

CompositeConstIterator BALL::Composite::beginComposite ( ) const [inline]

Definition at line 1358 of file composite.h.

CompositeIterator BALL::Composite::beginComposite ( ) [inline]

Definition at line 1351 of file composite.h.

virtual void BALL::Composite::clear ( ) [virtual]

Clear the composite properties. This method removes the composite's children and destructs them if they are auto-deletable.

: It does not remove the composite from any parental structure.

: This method updates the modification time stamp of this.

See also:: stamp; AutoDeletable; destroy

Reimplemented from BALL::Selectable.

Reimplemented in BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::Protein, BALL::Residue, and BALL::SecondaryStructure.

void* BALL::Composite::clone ( Composite & root ) const

Clone with a predicate. This method copies the attributes of this composite to root (shallow copy) and then adds recursively each of its children.

Parameters:

root the cloning target root is destroyed prior to any copying

Returns:: a pointer to the root composite (&root)

void BALL::Composite::clone_	(	Composite &	parent,
		Composite &	stack
	)			const `[private]`

bool BALL::Composite::containsSelection ( ) const

Return true if any descendant is selected. This method does not check all nodes recursively. Instead, on each modification of the tree, internal flags are updated and the information is propagated upwards in the tree.

: Complexity: O(1)

Returns:: bool true if any node in the subtree is selected

Size BALL::Composite::count ( const KernelPredicateType & predicate ) const

Count the number of nodes fulfilling a predicate in this subtree.

Parameters:

predicate

the predicate

Returns:: Size the number of nodes in the subtree satisfying the predicate

Size BALL::Composite::countDescendants ( ) const

Count the number of descendants.

Returns:: Size the number of descendants of this node

Size BALL::Composite::countDescendants_ ( ) const [private]

void BALL::Composite::deleteChildrenList_ ( std::list< Composite * > & composites )

virtual void BALL::Composite::deselect ( ) [virtual]

Deselect a composite. This method deselects the composite and all the composites therein.

: If the state of this composite is modified, its selection time stamp is updated and that of its ancestors (up to and including the root composite) as well. The time stamps of descendants that changed their selection state are update, too.

Reimplemented from BALL::Selectable.

void BALL::Composite::deselect_ ( bool update_parent = true ) [private]

void BALL::Composite::destroy ( bool virtual_destroy )

Non-virtual destroy method. This method behaves exactly like destroy except for a small difference: when called with true, it calls the virtual clear function. If called with false it calls the original clear function of Composite. This is useful when implementing the behaviour of derived classes.

: This method updates the modification time stamp of this.

See also:: stamp

Parameters:

virtual_destroy call the virtual clear method (true) or Composite::clear() (false)

virtual void BALL::Composite::destroy ( ) [virtual]

Destroy the composite. This method removes the composite from potential parental structures and then calls clear to destruct all children.

: This method updates the modification time stamp of this.

See also:: stamp; ~Composite; clear

Reimplemented in BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::Protein, BALL::Residue, and BALL::SecondaryStructure.

void BALL::Composite::determineSelection_ ( ) [private]

virtual void BALL::Composite::dump	(	std::ostream &	s = `std::cout`,
		Size	depth = `0`
	)			const `[virtual]`

Dump the constent of this instance to an ostream.

Parameters:

	s	the stream to which we will dump
	depth	the indentation depth of the output

Reimplemented in BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Fragment, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::Protein, BALL::Residue, and BALL::SecondaryStructure.

AncestorConstIterator BALL::Composite::endAncestor ( ) const [inline]

Definition at line 952 of file composite.h.

AncestorIterator BALL::Composite::endAncestor ( ) [inline]

Definition at line 939 of file composite.h.

ChildCompositeConstIterator BALL::Composite::endChildComposite ( ) const [inline]

Definition at line 1077 of file composite.h.

ChildCompositeIterator BALL::Composite::endChildComposite ( ) [inline]

Definition at line 1060 of file composite.h.

CompositeConstIterator BALL::Composite::endComposite ( ) const [inline]

Definition at line 1363 of file composite.h.

CompositeIterator BALL::Composite::endComposite ( ) [inline]

Definition at line 1353 of file composite.h.

void BALL::Composite::get	(	Composite &	composite,
		bool	deep = `true`
	)			const

Assignment of a tree to another. Create a deep (deep = true) or shallow copy of a composite and assign it to composite. composite is destroyed first.

Parameters:

	composite	the composite to assign the copy to
	deep	true for a deep copy

template<typename T >

BALL_INLINE const T * BALL::Composite::getAncestor ( const T & ) const [inline]

Find the first ancestor of type T (const method). This method operates also on constant trees.

Returns:: a pointer to the first composite found that is a kind of T or 0 if no matching composite was found to the root of the tree

Definition at line 1719 of file composite.h.

template<typename T >

BALL_INLINE T * BALL::Composite::getAncestor ( const T & ) [inline]

Find the first ancestor of type T. This method walks up the tree from parent to parent and checks whether the composite object is a kind of T. This method is useful to identify special container classes.

Returns:: a pointer to the first composite found that is a kind of T or 0 if no matching composite was found up to the root of the tree

Definition at line 1699 of file composite.h.

const Composite* BALL::Composite::getChild ( Index index ) const

Return a const pointer to the index th child of this composite. If no such child exists, 0 is returned. The index of the first child is 0.

Parameters:

index

the index of the child to return

Returns:: a const pointer to the child or 0 if there is no such child.

Composite* BALL::Composite::getChild ( Index index )

Return the index th child of this composite. If no such child exists, 0 is returned. The index of the first child is 0.

Parameters:

index

the index of the child to return

Returns:: a pointer to the child or 0 if there is no such child.

Size BALL::Composite::getDegree ( ) const

Return the degree of the node. This method returns the number of children of a composite object.

Returns:: Size the number of children

Size BALL::Composite::getDepth ( ) const

Get the depth of this item in its tree. The depth of a root item is 0.

Returns:: Size the depth

const Composite* BALL::Composite::getFirstChild ( ) const

Return a const pointer to the first child.

Returns:: a const pointer to the first child or 0 if there is no child.

Composite* BALL::Composite::getFirstChild ( )

Return a pointer to the first child.

Returns:: a pointer to the first child or 0 if there is no child.

Size BALL::Composite::getHeight ( ) const

Get the height of this item in its tree. The hight of a leaf is 0.

Returns:: Size the height

Size BALL::Composite::getHeight_	(	Size	size,
		Size &	max_height
	)			const `[private]`

const Composite* BALL::Composite::getLastChild ( ) const

Return a const pointer to the last child.

Returns:: a const pointer to the last child or 0 if there is no child.

Composite* BALL::Composite::getLastChild ( )

Return a pointer to the last child.

Returns:: a pointer to the last child or 0 if there is no child.

const Composite* BALL::Composite::getLowestCommonAncestor ( const Composite & composite ) const

Get a const reference to the lowest common ancestor of this item with an other. If no common ancestor exists, 0 is returned.

Returns:: Composite& the lowest common ancestor

Composite* BALL::Composite::getLowestCommonAncestor ( const Composite & composite )

Get the lowest common ancestor of this item with an other. If no common ancestor exists 0 is returned.

Returns:: Composite& the lowest common ancestor

const PreciseTime& BALL::Composite::getModificationTime ( ) const

Return the time of last modification

Returns:: the last modification time

template<typename T >

BALL_INLINE const T * BALL::Composite::getNext ( const T & dummy ) const [inline]

Find the next composite of type T (const method). This method walks backward in the tree from composite to composite and checks whether the composite object is a kind of T.

Returns:: a pointer to the first composite found that is a kind of T or 0 if no matching composite was found up to the root of the tree

Definition at line 1810 of file composite.h.

template<typename T >

BALL_INLINE T * BALL::Composite::getNext ( const T & ) [inline]

Find the next composite of type T. This method walks backward in the tree from composite to composite and checks whether the composite object is a kind of T.

Returns:: a pointer to the first composite found that is a kind of T or 0 if no matching composite was found up to the root of the tree

Definition at line 1780 of file composite.h.

const Composite* BALL::Composite::getParent ( ) const

Return the composite's parent (const method).

Returns:: a pointer to the parent composite or 0 if no parent exists

Composite* BALL::Composite::getParent ( )

Return the composite's parent.

Returns:: a pointer to the parent composite or 0 if no parent exists

Size BALL::Composite::getPathLength ( const Composite & composite ) const

Get the length of the path between two composite objects. If no path exists INVALID_SIZE is returned.

Parameters:

composite

the second object

Returns:: Size the size of the path

template<typename T >

BALL_INLINE const T * BALL::Composite::getPrevious ( const T & dummy ) const [inline]

Find the nearest previous composite of type T (const method). This method walks backward in the tree from composite to composite and checks whether the composite object is a kind of T.

Returns:: a pointer to the first composite found that is a kind of T or 0 if no matching composite was found up to the root of the tree

Definition at line 1769 of file composite.h.

template<typename T >

BALL_INLINE T * BALL::Composite::getPrevious ( const T & ) [inline]

Find the nearest previous composite of type T. This method walks backward in the tree from composite to composite and checks whether the composite object is a kind of T.

Returns:: a pointer to the first composite found that is a kind of T or 0 if no matching composite was found up to the root of the tree

Definition at line 1737 of file composite.h.

const Composite& BALL::Composite::getRoot ( ) const

Get a const reference to the root of this item.

Returns:: Composite& the root

Composite& BALL::Composite::getRoot ( )

Get the root of this item.

Returns:: Composite& the root

const PreciseTime& BALL::Composite::getSelectionTime ( ) const

Return the time of last change of selection.

Returns:: the last time of change of selection

const Composite* BALL::Composite::getSibling ( Index index ) const

Return a const pointer to the sibling index positions from this composite. A pointer to the sibling index positions to the right (for positive values of index) or -index positions to the left (for negative values of index) is returned. For Index = 0 the this-pointer is returned.

Parameters:

index

the index of the sibling

Returns:: a const pointer to the child or 0 if there is no such sibling.

Composite* BALL::Composite::getSibling ( Index index )

Return a pointer to the sibling index positions from this composite. A pointer to the sibling index positions to the right (for positive values of index) or -index positions to the left (for negative values of index) is returned. For Index = 0 the this-pointer is returned.

Parameters:

index

the index of the sibling

Returns:: a pointer to the child or 0 if there is no such sibling.

template<typename T >

BALL_INLINE bool BALL::Composite::hasAncestor ( const T & dummy ) const [inline]

Return true if the node has a ancestor of the same type as dummy.

Definition at line 1821 of file composite.h.

bool BALL::Composite::hasChild ( ) const

Return true if the node has a child.

bool BALL::Composite::hasNextSibling ( ) const

Return true if the node has a previous sibling. (Its parent has a child after this.)

bool BALL::Composite::hasParent ( ) const

Return true if the node has a parent.

bool BALL::Composite::hasPreviousSibling ( ) const

Return true if the node has a previous sibling. (Its parent has a child before this.)

bool BALL::Composite::hasSibling ( ) const

Return true if the node has a sibling. (Its parent has other childs.)

void BALL::Composite::host ( Visitor< Composite > & visitor ) throw (Exception::GeneralException)

Visitor host method. Composites may be visited. For an example look into Composite_test.C

Parameters:

visitor

the visitor

void BALL::Composite::insertAfter ( Composite & composite )

Insert a node after this node. This method inserts composite after this node, if this node has a parent and is not a descendant of composite. Self-insertion is recognized and ignored (nothing is done).

: This method updates the modification time stamp.

See also:: stamp

Parameters:

composite the node to be inserted in the tree after of this

void BALL::Composite::insertBefore ( Composite & composite )

Insert a node before this node. This method inserts composite before this node, if this node has a parent and is not a descendant of composite. Self-insertion is recognized and ignored (nothing is done).

: This method updates the modification time stamp.

See also:: stamp

Parameters:

composite the node to be inserted in the tree before this

static bool BALL::Composite::insertParent	(	Composite &	parent,
		Composite &	first,
		Composite &	last,
		bool	destroy_parent = `true`
	)			`[static]`

Insert a new parent node. This method is used to combine a range of nodes into a single parent. First, the parent composite is destroyed. Then, all nodes from first through last are inserted into parent and parent is inserted in the former position of first. The method returns false, if { first} or last have differing parents, if parent is identical with either first or last, or if first is already a descendant of parent.

: This method updates the modification time stamp.

See also:: stamp

Parameters:

	parent	the new parent of the nodes from `first` through `last`
	first	the first of the nodes to be inserted into `parent`
	last	the last of the nodes to be inserted into `parent`
	destroy_parent	keeps the current contents of `parent` if set to `true`

bool BALL::Composite::isAncestorOf ( const Composite & composite ) const

Return true if the node has composite as descendent.

bool BALL::Composite::isChildOf ( const Composite & composite ) const

Return true if the node has the parent composite.

bool BALL::Composite::isDescendantOf ( const Composite & composite ) const

Return true if the node is a descendent of composite.

bool BALL::Composite::isEmpty ( ) const

Return true if the node does not contain children.

Returns:: bool true if number_of_children_ == 0

bool BALL::Composite::isFirstChild ( ) const

Return true if the node is the first child of its parent.

bool BALL::Composite::isFirstChildOf ( const Composite & composite ) const

Return true if the node is the first child of composite.

bool BALL::Composite::isHomomorph ( const Composite & composite ) const

Return true if composite is homomorph to this node. (The subtrees of the two instances have to be of the same form.)

bool BALL::Composite::isInterior ( ) const

Return true if the node is not the root or a leaf.

bool BALL::Composite::isLastChild ( ) const

Return true if the node is the last child of its parent.

bool BALL::Composite::isLastChildOf ( const Composite & composite ) const

Return true if the node is the last child of composite.

bool BALL::Composite::isNextSiblingOf ( const Composite & composite ) const

Return true if the node is a next sibling of composite.

bool BALL::Composite::isParentOf ( const Composite & composite ) const

Return true if the node is the parent of composite.

bool BALL::Composite::isPreviousSiblingOf ( const Composite & composite ) const

Return true if the node is a previous sibling of composite.

bool BALL::Composite::isRelatedWith ( const Composite & composite ) const

Return true if the node has composite as ancestor or composite is ancestor of this node.

bool BALL::Composite::isRoot ( ) const

Return true if the node has no parent.

Returns:: bool true if parent_ == 0

bool BALL::Composite::isRootOf ( const Composite & composite ) const

Return true if the node is root of composite.

bool BALL::Composite::isSiblingOf ( const Composite & composite ) const

Return true if the node is a sibling of composite.

virtual bool BALL::Composite::isValid ( ) const [virtual]

Test if the subtree with this node as root is valid. (The structure of the subtree has to be valid.)

Reimplemented from BALL::Object.

Reimplemented in BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::NucleicAcid, BALL::Nucleotide, BALL::Protein, BALL::Residue, and BALL::SecondaryStructure.

bool BALL::Composite::operator!= ( const Composite & composite ) const

Inequality operator.

See also:: operator == B

Composite& BALL::Composite::operator= ( const Composite & composite )

Assignment operator.

Parameters:

composite

the Composite tree to assign from

Returns:: a const reference to this

bool BALL::Composite::operator== ( const Composite & composite ) const

Equality operator. Compares the handles of two Composite objects, therefore two Composite objects can never be equal.

See also:: Object::operator ==

Parameters:

composite

the composite against which equality will be tested

virtual void BALL::Composite::persistentRead ( PersistenceManager & pm ) throw (Exception::GeneralException) [virtual]

Read a persistent object.

Parameters:

pm

the persistence manager

Reimplemented from BALL::PersistentObject.

Reimplemented in BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Fragment, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, and BALL::System.

virtual void BALL::Composite::persistentWrite	(	PersistenceManager &	pm,
		const char *	name = `0`
	)			const throw (Exception::GeneralException) `[virtual]`

Write a persistent copy of the object.

Parameters:

	pm	the persistence manager
	name	the object name

Reimplemented from BALL::PersistentObject.

Reimplemented in BALL::Atom, BALL::AtomContainer, BALL::Bond, BALL::Chain, BALL::Fragment, BALL::Molecule, BALL::NucleicAcid, BALL::Nucleotide, BALL::PDBAtom, BALL::Protein, BALL::Residue, BALL::SecondaryStructure, and BALL::System.

void BALL::Composite::prependChild ( Composite & composite )

Insert a composite as the first child of this composite. Updates the modification time stamp.

See also:: stamp

Parameters:

composite

the composite to be inserted

ChildCompositeConstReverseIterator BALL::Composite::rbeginChildComposite ( ) const [inline]

Definition at line 1101 of file composite.h.

ChildCompositeReverseIterator BALL::Composite::rbeginChildComposite ( ) [inline]

Definition at line 1087 of file composite.h.

CompositeConstReverseIterator BALL::Composite::rbeginComposite ( ) const [inline]

Definition at line 1384 of file composite.h.

CompositeReverseIterator BALL::Composite::rbeginComposite ( ) [inline]

Definition at line 1371 of file composite.h.

bool BALL::Composite::removeChild ( Composite & child )

Remove a child from its parent. child is only removed, if it is a true child of this.

: This method updates the modification time stamp of this.

See also:: stamp

Parameters:

child

the child to remove

Returns:: false if child could not be removed

Size BALL::Composite::removeSelected ( )

Remove selected subcomposites. This method iterates over all children of the current composite and removes all selected composites by deleteing them. If the respective Composite are not AutoDeletable, they are just remove d from the hierarchy, but not deleted.

This method is useful in combination with the Selector class in order to remove unwanted partitions of kernel data structures.

Returns:: the number of composites deleted.

Size BALL::Composite::removeUnselected ( )

Remove unselected subcomposites. This method iterates over all children of the current composite and removes all unselected composites by deleteing them. If the respective Composite are not AutoDeletable, they are just remove d from the hierarchy, but not deleted.

This method is useful in combination with the Selector class in order to remove unwanted partitions of kernel data structures.

Returns:: the number of composites deleted.

ChildCompositeConstReverseIterator BALL::Composite::rendChildComposite ( ) const [inline]

Definition at line 1106 of file composite.h.

ChildCompositeReverseIterator BALL::Composite::rendChildComposite ( ) [inline]

Definition at line 1092 of file composite.h.

CompositeConstReverseIterator BALL::Composite::rendComposite ( ) const [inline]

Definition at line 1389 of file composite.h.

CompositeReverseIterator BALL::Composite::rendComposite ( ) [inline]

Definition at line 1376 of file composite.h.

void BALL::Composite::replace ( Composite & composite )

This instance and its subtree is removed form its tree and replaced by composite and its subtree.

: This method updates the modification time stamp of this and composite.

See also:: stamp

Parameters:

composite

the composite which will be inserted

virtual void BALL::Composite::select ( ) [virtual]

Select a composite. This method selects the composite and all the composites therein.

: If the state of this composite is modified, its selection time stamp is updated and that of its ancestors (up to and including the root composite) as well. The time stamps of descendants that changed their selection state are update, too.

Reimplemented from BALL::Selectable.

void BALL::Composite::select_ ( bool update_parent = true ) [private]

void BALL::Composite::set	(	const Composite &	composite,
		bool	deep = `true`
	)

Assignment.

Parameters:

	composite	the Composite tree to assign from
	deep	a `bool` deciding whether the assignment will be deep or shallow.

void BALL::Composite::splice ( Composite & composite )

Insert the children of composite into this composite. The children of composite are inserted at the position of composite if composite is a child of this. Otherwise the children are inserted using spliceBefore .

: This method updates the modification time stamp.

See also:: stamp

Parameters:

composite

the composite to be spliced

void BALL::Composite::spliceAfter ( Composite & composite )

Append all children of composite to the children of this composite. The method does nothing, if composite is identical to this or is a descendent of this.

: This method updates the modification time stamp.

See also:: stamp

Parameters:

composite

the composite to be spliced

void BALL::Composite::spliceBefore ( Composite & composite )

Prepend all children of composite to the children of this composite. The method does nothing, if composite is identical to this or is a descendent of this.

: This method updates the modification time stamp.

See also:: stamp

Parameters:

the

composite to be spliced

void BALL::Composite::stamp ( StampType stamp = BOTH )

Modify a time stamp. Update one or both of the two time stamps with the current time. The time stamp is then propagated up to the root of the composite tree. Each composite contains two stamps. the modification stamp is updated each time the tree structure changes, while the selection stamp is updated each time the selection status changes.

Parameters:

stamp

the time stamp type

void BALL::Composite::swap ( Composite & composite )

Swap the contents of two composites.