#include <BALL/VIEW/MODELS/surfaceModel.h>

Inheritance diagram for BALL::VIEW::AddSurfaceModel:

Public Member Functions
Constructors and Destructor
	AddSurfaceModel ()
	Default Constructor. More...

	AddSurfaceModel (const AddSurfaceModel &add_surface_model)
	Copy constructor. More...

virtual	~AddSurfaceModel ()
	Destructor. More...

virtual void	clear ()

virtual void	clearComposites ()

Accessors
SurfaceProcessor::SurfaceType	getType () const
	Return the surface type (SES/SAS) More...

void	setType (SurfaceProcessor::SurfaceType type)
	Set the surface type (SES/SAS) More...

Processor specific methods
virtual Processor::Result	operator() (Composite &composite)

Public Member Functions inherited from BALL::VIEW::ModelProcessor
	ModelProcessor ()

	ModelProcessor (const ModelProcessor &model_processor)

virtual	~ModelProcessor ()

virtual bool	isValid () const

GeometricObjectList &	getGeometricObjects ()
	Return the list with the created geometric objects. More...

const GeometricObjectList &	getGeometricObjects () const
	Return the list with the created geometric objects. More...

void	setDrawingPrecision (Index precision)

Index	getDrawingPrecision () const

void	setSurfaceDrawingPrecision (float precision)

float	getSurfaceDrawingPrecision () const

Public Member Functions inherited from BALL::UnaryProcessor< Composite >
	UnaryProcessor ()

	UnaryProcessor (const UnaryProcessor &)

virtual	~UnaryProcessor ()

virtual bool	start ()

virtual bool	finish ()

Public Member Functions inherited from BALL::PropertyManager
BALL_INLINE	PropertyManager ()
	Default constructor. More...

BALL_INLINE	PropertyManager (const PropertyManager &property_manager)
	Copy constructor. More...

virtual	~PropertyManager ()
	Destructor. More...

virtual void	destroy ()
	Clears all properties. More...

void	set (const PropertyManager &property_manager)

const PropertyManager &	operator= (const PropertyManager &property_manager)

void	get (PropertyManager &property_manager) const

void	swap (PropertyManager &property_manager)

BitVector &	getBitVector ()

const BitVector &	getBitVector () const

	operator BitVector & ()

void	setProperty (Property property)

void	clearProperty (Property property)

void	toggleProperty (Property property)

Size	countProperties () const

const NamedProperty &	getNamedProperty (Position index) const

NamedProperty &	getNamedProperty (Position index)

void	setProperty (const NamedProperty &property)

void	setProperty (const string &name)

void	setProperty (const string &name, bool value)

void	setProperty (const string &name, int value)

void	setProperty (const string &name, unsigned int value)

void	setProperty (const string &name, float value)

void	setProperty (const string &name, double value)

void	setProperty (const string &name, const string &value)

void	setProperty (const string &name, const PersistentObject &value)

const NamedProperty &	getProperty (const string &name) const

NamedPropertyIterator	beginNamedProperty ()

NamedPropertyIterator	endNamedProperty ()

void	clearProperty (const string &name)

Size	countNamedProperties () const

bool	hasProperty (Property property) const
	Query for an unnamed property. More...

bool	hasProperty (const string &name) const
	Query for a named property. More...

bool	operator== (const PropertyManager &pm) const

bool	operator!= (const PropertyManager &pm) const
	Inequality operator. More...

void	write (PersistenceManager &pm) const
	Persistent stream writing. More...

bool	read (PersistenceManager &pm)
	Persistent stream reading. More...

bool	isValid () const

void	dump (std::ostream &s=std::cout, Size depth=0) const

debuggers and diagnostics
HashSet< Atom * >	atoms_

SurfaceProcessor::SurfaceType	type_

float	probe_radius_

virtual void	dump (std::ostream &s=std::cout, Size depth=0) const

void	setProbeRadius (float radius)

float	getProbeRadius () const

virtual bool	createGeometricObjects ()

Additional Inherited Members
Public Types inherited from BALL::UnaryFunctor< Composite, Processor::Result >
typedef Processor::Result	result_type

typedef Composite	argument_type

typedef Composite &	argument_reference

typedef const Composite &	const_argument_reference

typedef Composite *	argument_pointer

typedef const Composite *	const_argument_pointer

Protected Attributes inherited from BALL::VIEW::ModelProcessor
GeometricObjectList	geometric_objects_

Index	drawing_precision_

float	surface_drawing_precision_

Detailed Description

AddSurfaceModel class. The class AddSurfaceModel is a model processor that creates a surface model of the given Composite object. A Mesh object is created and filled with the method SurfaceProcessor::getSurface. The surface can be either a solvent excluded surface (SES, default) or the solvent accesible surface (SAS). See SurfaceProcessor for details.

See Also: Mesh; SurfaceProcessor

Definition at line 34 of file surfaceModel.h.

Constructor & Destructor Documentation

BALL::VIEW::AddSurfaceModel::AddSurfaceModel ( )

Default Constructor.

BALL::VIEW::AddSurfaceModel::AddSurfaceModel ( const AddSurfaceModel & add_surface_model )

Copy constructor.

virtual BALL::VIEW::AddSurfaceModel::~AddSurfaceModel ( )

virtual

Destructor.

Member Function Documentation

virtual void BALL::VIEW::AddSurfaceModel::clear ( )

virtual

Explicit default initialization. Calls ModelProcessor::clear.

Reimplemented from BALL::VIEW::ModelProcessor.

virtual void BALL::VIEW::AddSurfaceModel::clearComposites ( )

virtual

Needed in derived classes, which store references to the Composite instances they worked on. Here only needed for a common interface and therefore empty.

Reimplemented from BALL::VIEW::ModelProcessor.

virtual bool BALL::VIEW::AddSurfaceModel::createGeometricObjects ( )

virtual

Method to create geometric objects. This method is called in Representation::update() after all operator() was called for all Composites. To be overloaded in derived classes

Reimplemented from BALL::VIEW::ModelProcessor.

virtual void BALL::VIEW::AddSurfaceModel::dump	(	std::ostream &	s = `std::cout`,
		Size	depth = `0`
	)		const

virtual

Internal value dump. Dump the current state to the output ostream with a given dumping depth. Calls ModelProcessor::dump.

Parameters

s	output stream where to output the state
depth	the dumping depth

Reimplemented from BALL::VIEW::ModelProcessor.

float BALL::VIEW::AddSurfaceModel::getProbeRadius ( ) const

inline

Definition at line 106 of file surfaceModel.h.

SurfaceProcessor::SurfaceType BALL::VIEW::AddSurfaceModel::getType ( ) const

inline

Return the surface type (SES/SAS)

Definition at line 69 of file surfaceModel.h.

virtual Processor::Result BALL::VIEW::AddSurfaceModel::operator() ( Composite & composite )

virtual

Operator method. This method stores all Composite objects. In the finish() method for all stored start composite a Mesh object will be created. The resulting Representation is named after the first processed Composite.

Parameters

composite the Composite object that will be processed

Returns: Processor::Result the result

Reimplemented from BALL::UnaryProcessor< Composite >.

void BALL::VIEW::AddSurfaceModel::setProbeRadius ( float radius )

inline

Definition at line 102 of file surfaceModel.h.

void BALL::VIEW::AddSurfaceModel::setType ( SurfaceProcessor::SurfaceType type )

inline

Set the surface type (SES/SAS)

Definition at line 72 of file surfaceModel.h.

Member Data Documentation

HashSet<Atom*> BALL::VIEW::AddSurfaceModel::atoms_

private

Definition at line 114 of file surfaceModel.h.

float BALL::VIEW::AddSurfaceModel::probe_radius_

private

Definition at line 118 of file surfaceModel.h.

SurfaceProcessor::SurfaceType BALL::VIEW::AddSurfaceModel::type_

private

Definition at line 116 of file surfaceModel.h.

Public Member Functions

debuggers and diagnostics

Additional Inherited Members

Detailed Description

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation