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| struct | FLASHHelperClasses |
| | Wrapper struct for all the structs needed by the FLASHDeconv The following structures/classes are defined: PrecalculatedAveragine, MassFeature, IsobaricQuantities, LogMzPeak, Tag, and DAG for tagging. i) PrecalculatedAveragine - to match observed isotopic envelope against theoretical one, theoretical envelope from averagine model should be quickly calculated. To do so, precalculate averagines for different masses at the beginning of FLASHDeconv runs ii) MassFeature - the feature of the deconvolved masses (instead of m/zs for MS features). iii) IsobaricQuantities - the quantities from isobaric quantification (implemented within FLASHDeconv) iv) LogMzPeak - Log transformed peak from original peak. Contains information such as charge, isotope index, and uncharged mass. v) Tag - the sequence tag generated on deconvolved spectra in FLASHTaggerAlgorithm vi) DAG - the graph for sequence tagging in FLASHTaggerAlgorithm and for proteoform characterization in FLASHExtenderAlgorithm. More...
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| class | FLASHHelperClasses::PrecalculatedAveragine |
| | Averagine patterns pre-calculated for speed up. Other variables are also calculated for fast cosine calculation. More...
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| struct | FLASHHelperClasses::MassFeature |
| | Mass feature (Deconvolved masses in spectra are traced by Mass tracing to generate mass features - like LC-MS features). More...
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| struct | FLASHHelperClasses::IsobaricQuantities |
| | Isobaric quantities. More...
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| class | FLASHHelperClasses::LogMzPeak |
| | log transformed peak. After deconvolution, all necessary information from deconvolution such as charge and isotope index is stored. More...
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1.9.1