PSMArrowIO.h

Go to the documentation of this file.

// Copyright (c) 2002-present, OpenMS Inc. -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Timo Sachsenberg $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/config.h>
 
#include <OpenMS/CONCEPT/Types.h>
#include <OpenMS/DATASTRUCTURES/StringUtils.h>
#include <OpenMS/METADATA/PeptideIdentificationList.h>
#include <OpenMS/METADATA/ProteinIdentification.h>
#include <OpenMS/FORMAT/MSExperimentArrowExport.h>
 
#include <vector>
 
namespace OpenMS
{
 
class OPENMS_DLLAPI PSMArrowIO
{
public:
  static bool exportToParquet(
    const std::vector<ProteinIdentification>& protein_identifications,
    const PeptideIdentificationList& peptide_identifications,
    const std::string& dir,
    bool export_all_psms = true,
    const ParquetWriteConfig& config = ParquetWriteConfig{});
 
  static bool importFromParquet(
    const std::string& dir,
    std::vector<ProteinIdentification>& protein_identifications,
    PeptideIdentificationList& peptide_identifications);
};
 
} // namespace OpenMS