Visitor which can save a full ConsensusMap; subsequently the data can be stored to a file. More...

#include <OpenMS/VISUAL/VISITORS/LayerStoreData.h>

Inheritance diagram for LayerStoreDataConsensusMapAll:

Collaboration diagram for LayerStoreDataConsensusMapAll:

Public Member Functions
	LayerStoreDataConsensusMapAll ()

void	saveToFile (const String &filename, const ProgressLogger::LogType lt) const override

void	storeFullCM (const ConsensusMap &cm)

Public Member Functions inherited from LayerStoreData
	LayerStoreData (FileTypeList supported_storage_formats)

virtual	~LayerStoreData ()=default
	virtual D'tor for proper cleanup of derived classes' members More...

FileTypeList	getSupportedFileFormats () const
	Which formats are supported when writing the file? More...

Private Attributes
const ConsensusMap *	full_cm_ = nullptr
	pointer to the full data, when storeFullExperiment() was called More...

Additional Inherited Members
Protected Member Functions inherited from LayerStoreData
FileTypes::Type	getSupportedExtension_ (const String &filename) const
	extracts the supported extension (converting UNKNOWN to first item in storage_formats_) or throws an Exception::UnableToCreateFile More...

Protected Attributes inherited from LayerStoreData
FileTypeList	storage_formats_
	file formats which can hold the data from the layer; The first item should be the preferred/default format More...

Detailed Description

Visitor which can save a full ConsensusMap; subsequently the data can be stored to a file.

Since only a pointer is stored internally, make sure the lifetime of the ConsensusMap exceeds this visitor.

Constructor & Destructor Documentation

◆ LayerStoreDataConsensusMapAll()

LayerStoreDataConsensusMapAll ( )

inline

References FileTypes::CONSENSUSXML.

Member Function Documentation

◆ saveToFile()

void saveToFile	(	const String &	filename,
		const ProgressLogger::LogType	lt
	)		const

overridevirtual

Save the internal data to a file. The filename's suffix determines the file format. It must be one of getSupportedFileFormats() or UNKNOWN. If the filename's suffix is unknown, the first item from getSupportedFileFormats() determines the storage format.

Parameters

filename	A relative or absolute path+filename. Its suffix determines the format.
lt	Show a progress bar in the GUI?

Exceptions

Exception::UnableToCreateFile if the extension of filename is neither in getSupportedFileFormats() nor UNKNOWN.

Implements LayerStoreData.

◆ storeFullCM()

void storeFullCM ( const ConsensusMap & cm )

Member Data Documentation

◆ full_cm_

const ConsensusMap* full_cm_ = nullptr

private

pointer to the full data, when storeFullExperiment() was called

Public Member Functions

Private Attributes

Additional Inherited Members