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Public Member Functions | Public Attributes | List of all members
MRMFeatureSelector_test Class Reference

#include <OpenMS/ANALYSIS/OPENSWATH/MRMFeatureSelector.h>

Inheritance diagram for MRMFeatureSelector_test:
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Collaboration diagram for MRMFeatureSelector_test:
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Public Member Functions

 MRMFeatureSelector_test ()=default
 
 ~MRMFeatureSelector_test () override=default
 
void constructTargTransList_ (const FeatureMap &features, std::vector< std::pair< double, std::string > > &time_to_name, std::map< std::string, std::vector< Feature > > &feature_name_map, const bool select_transition_group) const
 
double weightScore_ (const double score, const LambdaScore lambda_score) const
 
double computeScore_ (const Feature &feature, const std::map< std::string, LambdaScore > &score_weights) const
 
std::string removeSpaces_ (std::string str) const
 
- Public Member Functions inherited from MRMFeatureSelectorQMIP
void optimize (const std::vector< std::pair< double, std::string > > &time_to_name, const std::map< std::string, std::vector< Feature > > &feature_name_map, std::vector< std::string > &result, const SelectorParameters &parameters) const override
 Build the quadratic LP problem for time_to_name and write the names of selected features to result.
 
- Public Member Functions inherited from MRMFeatureSelector
 MRMFeatureSelector ()=default
 
virtual ~MRMFeatureSelector ()=default
 
void selectMRMFeature (const FeatureMap &features, FeatureMap &selected_filtered, const SelectorParameters &parameters) const
 

Public Attributes

MRMFeatureSelectorQMIP selector_
 

Additional Inherited Members

- Public Types inherited from MRMFeatureSelector
enum class  VariableType { INTEGER = 1 , CONTINUOUS }
 
enum class  LambdaScore {
  LINEAR = 1 , INVERSE , LOG , INVERSE_LOG ,
  INVERSE_LOG10
}
 
- Protected Member Functions inherited from MRMFeatureSelector
Int addVariable_ (LPWrapper &problem, const std::string &name, const bool bounded, const double obj, const VariableType variableType) const
 
double computeScore_ (const Feature &feature, const std::map< std::string, LambdaScore > &score_weights) const
 
void addConstraint_ (LPWrapper &problem, const std::vector< Int > &indices, const std::vector< double > &values, const std::string &name, const double lb, const double ub, const LPWrapper::Type param) const
 

Constructor & Destructor Documentation

◆ MRMFeatureSelector_test()

MRMFeatureSelector_test ( )
default

◆ ~MRMFeatureSelector_test()

~MRMFeatureSelector_test ( )
overridedefault

Member Function Documentation

◆ computeScore_()

double computeScore_ ( const Feature &  feature,
const std::map< std::string, LambdaScore > &  score_weights 
) const
inline

References MRMFeatureSelector::computeScore_(), and MRMFeatureSelector_test::selector_.

◆ constructTargTransList_()

void constructTargTransList_ ( const FeatureMap &  features,
std::vector< std::pair< double, std::string > > &  time_to_name,
std::map< std::string, std::vector< Feature > > &  feature_name_map,
const bool  select_transition_group 
) const
inline

References MRMFeatureSelector::constructTargTransList_(), and MRMFeatureSelector_test::selector_.

◆ removeSpaces_()

std::string removeSpaces_ ( std::string  str) const
inline

References MRMFeatureSelector::removeSpaces_(), and MRMFeatureSelector_test::selector_.

◆ weightScore_()

double weightScore_ ( const double  score,
const LambdaScore  lambda_score 
) const
inline

References MRMFeatureSelector_test::selector_, and MRMFeatureSelector::weightScore_().

Member Data Documentation

◆ selector_

MRMFeatureSelectorQMIP selector_

Referenced by MRMFeatureSelector_test::computeScore_(), MRMFeatureSelector_test::constructTargTransList_(), MRMFeatureSelector_test::removeSpaces_(), and MRMFeatureSelector_test::weightScore_().