OpenSwathMatrixExporter Class Reference

Build and write OpenSWATH quantification matrices. More...

#include <OpenMS/ANALYSIS/OPENSWATH/OpenSwathMatrixExporter.h>

Static Public Member Functions
static OpenSwathQuantMatrix	buildMatrix (const std::vector< OpenSwathExportRow > &rows, const OpenSwathMatrixExportConfig &config)
	Build a matrix from filtered export rows.
static void	writeMatrix (const std::string &filename, const OpenSwathQuantMatrix &matrix, const OpenSwathMatrixExportConfig &config)
	Write a previously built matrix to TSV or Parquet.

Detailed Description

Build and write OpenSWATH quantification matrices.

Matrix construction follows the same high-level PyProphet logic: select the best peakgroup per run / precursor first, then summarize to precursor, peptide, protein, or gene level.

Member Function Documentation

buildMatrix()

static OpenSwathQuantMatrix buildMatrix ( const std::vector< OpenSwathExportRow > &  rows, const OpenSwathMatrixExportConfig &  config  )

static

Build a matrix from filtered export rows.

writeMatrix()

static void writeMatrix ( const std::string &  filename, const OpenSwathQuantMatrix &  matrix, const OpenSwathMatrixExportConfig &  config  )

static

Write a previously built matrix to TSV or Parquet.