QTCluster::BulkData Class Reference

Class to store the bulk internal data (neighbors, annotations, etc.) More...

#include <OpenMS/DATASTRUCTURES/QTCluster.h>

Collaboration diagram for QTCluster::BulkData:

Public Member Functions
	BulkData (const OpenMS::GridFeature *const center_point, Size num_maps, double max_distance, Int x_coord, Int y_coord, Size id)
	Detailed constructor of the cluster body.

Private Attributes
const GridFeature *const	center_point_
	Pointer to the cluster center.
Size	id_
	unique id of this cluster
NeighborMap	neighbors_
	Map that keeps track of the best current feature for each map.
NeighborMapMulti	tmp_neighbors_
	Temporary map tracking all neighbors.
double	max_distance_
	Maximum distance of a point that can still belong to the cluster.
Size	num_maps_
	Number of input maps.
Int	x_coord_
	x coordinate in the grid cell
Int	y_coord_
	y coordinate in the grid cell
std::set< AASequence >	annotations_
	Set of annotations of the cluster.

Friends
class	QTCluster

Detailed Description

Class to store the bulk internal data (neighbors, annotations, etc.)

Has no functionality without a QTCluster pointing to it. Create object of this class before calling constructor of QTCluster

Constructor & Destructor Documentation

BulkData()

BulkData	(	const OpenMS::GridFeature *const	center_point,
		Size	num_maps,
		double	max_distance,
		Int	x_coord,
		Int	y_coord,
		Size	id
	)

Detailed constructor of the cluster body.

Parameters

[in]	center_point	Pointer to the center point
[in]	num_maps	Number of input maps
[in]	max_distance	Maximum allowed distance of two points
[in]	x_coord	The x-coordinate in the grid cell
[in]	y_coord	The y-coordinate in the grid cell
[in]	id	Unique ID of this cluster

Friends And Related Symbol Documentation

QTCluster

friend class QTCluster

friend

Member Data Documentation

annotations_

std::set<AASequence> annotations_

private

Set of annotations of the cluster.

The set of peptide sequences that is compatible to the cluster center and results in the best cluster quality.

center_point_

const GridFeature* const center_point_

private

Pointer to the cluster center.

id_

Size id_

private

unique id of this cluster

max_distance_

double max_distance_

private

Maximum distance of a point that can still belong to the cluster.

neighbors_

NeighborMap neighbors_

private

Map that keeps track of the best current feature for each map.

num_maps_

Size num_maps_

private

Number of input maps.

tmp_neighbors_

NeighborMapMulti tmp_neighbors_

private

Temporary map tracking all neighbors.

For each input run, a multimap which contains pointers to all neighboring elements and the respective distance.

x_coord_

Int x_coord_

private

x coordinate in the grid cell

y_coord_

Int y_coord_

private

y coordinate in the grid cell