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Static Public Member Functions | Static Public Attributes | List of all members
OSWFeatureSchema Struct Reference

Schema for OpenSWATH feature scoring results table. More...

#include <OpenMS/FORMAT/ArrowSchemaRegistry.h>

Collaboration diagram for OSWFeatureSchema:
[legend]

Static Public Member Functions

static std::shared_ptr< arrow::Schema > schema ()
 

Static Public Attributes

static constexpr const char * FEATURE_ID = "feature_id"
 
static constexpr const char * RUN_ID = "run_id"
 
static constexpr const char * PRECURSOR_ID = "precursor_id"
 
static constexpr const char * EXP_RT = "exp_rt"
 
static constexpr const char * EXP_IM = "exp_im"
 
static constexpr const char * NORM_RT = "norm_rt"
 
static constexpr const char * DELTA_RT = "delta_rt"
 
static constexpr const char * LEFT_WIDTH = "left_width"
 
static constexpr const char * RIGHT_WIDTH = "right_width"
 
static constexpr const char * EXP_IM_LEFTWIDTH = "exp_im_leftwidth"
 
static constexpr const char * EXP_IM_RIGHTWIDTH = "exp_im_rightwidth"
 
static constexpr const char * MS1_AREA_INTENSITY = "ms1_area_intensity"
 
static constexpr const char * MS1_APEX_INTENSITY = "ms1_apex_intensity"
 
static constexpr const char * MS1_EXP_IM = "ms1_exp_im"
 
static constexpr const char * MS1_DELTA_IM = "ms1_delta_im"
 
static constexpr const char * VAR_MS1_MASSDEV_SCORE = "var_ms1_massdev_score"
 
static constexpr const char * VAR_MS1_IM_MS1_DELTA_SCORE = "var_ms1_im_ms1_delta_score"
 
static constexpr const char * VAR_MS1_MI_SCORE = "var_ms1_mi_score"
 
static constexpr const char * VAR_MS1_MI_CONTRAST_SCORE = "var_ms1_mi_contrast_score"
 
static constexpr const char * VAR_MS1_MI_COMBINED_SCORE = "var_ms1_mi_combined_score"
 
static constexpr const char * VAR_MS1_ISOTOPE_CORRELATION_SCORE = "var_ms1_isotope_correlation_score"
 
static constexpr const char * VAR_MS1_ISOTOPE_OVERLAP_SCORE = "var_ms1_isotope_overlap_score"
 
static constexpr const char * VAR_MS1_XCORR_COELUTION = "var_ms1_xcorr_coelution"
 
static constexpr const char * VAR_MS1_XCORR_COELUTION_CONTRAST = "var_ms1_xcorr_coelution_contrast"
 
static constexpr const char * VAR_MS1_XCORR_COELUTION_COMBINED = "var_ms1_xcorr_coelution_combined"
 
static constexpr const char * VAR_MS1_XCORR_SHAPE = "var_ms1_xcorr_shape"
 
static constexpr const char * VAR_MS1_XCORR_SHAPE_CONTRAST = "var_ms1_xcorr_shape_contrast"
 
static constexpr const char * VAR_MS1_XCORR_SHAPE_COMBINED = "var_ms1_xcorr_shape_combined"
 
static constexpr const char * MS2_AREA_INTENSITY = "ms2_area_intensity"
 
static constexpr const char * MS2_TOTAL_AREA_INTENSITY = "ms2_total_area_intensity"
 
static constexpr const char * MS2_APEX_INTENSITY = "ms2_apex_intensity"
 
static constexpr const char * MS2_EXP_IM = "ms2_exp_im"
 
static constexpr const char * MS2_EXP_IM_LEFTWIDTH = "ms2_exp_im_leftwidth"
 
static constexpr const char * MS2_EXP_IM_RIGHTWIDTH = "ms2_exp_im_rightwidth"
 
static constexpr const char * MS2_DELTA_IM = "ms2_delta_im"
 
static constexpr const char * MS2_TOTAL_MI = "ms2_total_mi"
 
static constexpr const char * VAR_MS2_BSERIES_SCORE = "var_ms2_bseries_score"
 
static constexpr const char * VAR_MS2_DOTPROD_SCORE = "var_ms2_dotprod_score"
 
static constexpr const char * VAR_MS2_INTENSITY_SCORE = "var_ms2_intensity_score"
 
static constexpr const char * VAR_MS2_ISOTOPE_CORRELATION_SCORE = "var_ms2_isotope_correlation_score"
 
static constexpr const char * VAR_MS2_ISOTOPE_OVERLAP_SCORE = "var_ms2_isotope_overlap_score"
 
static constexpr const char * VAR_MS2_LIBRARY_CORR = "var_ms2_library_corr"
 
static constexpr const char * VAR_MS2_LIBRARY_DOTPROD = "var_ms2_library_dotprod"
 
static constexpr const char * VAR_MS2_LIBRARY_MANHATTAN = "var_ms2_library_manhattan"
 
static constexpr const char * VAR_MS2_LIBRARY_RMSD = "var_ms2_library_rmsd"
 
static constexpr const char * VAR_MS2_LIBRARY_ROOTMEANSQUARE = "var_ms2_library_rootmeansquare"
 
static constexpr const char * VAR_MS2_LIBRARY_SANGLE = "var_ms2_library_sangle"
 
static constexpr const char * VAR_MS2_LOG_SN_SCORE = "var_ms2_log_sn_score"
 
static constexpr const char * VAR_MS2_MANHATTAN_SCORE = "var_ms2_manhattan_score"
 
static constexpr const char * VAR_MS2_MASSDEV_SCORE = "var_ms2_massdev_score"
 
static constexpr const char * VAR_MS2_MASSDEV_SCORE_WEIGHTED = "var_ms2_massdev_score_weighted"
 
static constexpr const char * VAR_MS2_MI_SCORE = "var_ms2_mi_score"
 
static constexpr const char * VAR_MS2_MI_WEIGHTED_SCORE = "var_ms2_mi_weighted_score"
 
static constexpr const char * VAR_MS2_MI_RATIO_SCORE = "var_ms2_mi_ratio_score"
 
static constexpr const char * VAR_MS2_NORM_RT_SCORE = "var_ms2_norm_rt_score"
 
static constexpr const char * VAR_MS2_XCORR_COELUTION = "var_ms2_xcorr_coelution"
 
static constexpr const char * VAR_MS2_XCORR_COELUTION_WEIGHTED = "var_ms2_xcorr_coelution_weighted"
 
static constexpr const char * VAR_MS2_XCORR_SHAPE = "var_ms2_xcorr_shape"
 
static constexpr const char * VAR_MS2_XCORR_SHAPE_WEIGHTED = "var_ms2_xcorr_shape_weighted"
 
static constexpr const char * VAR_MS2_YSERIES_SCORE = "var_ms2_yseries_score"
 
static constexpr const char * VAR_MS2_ELUTION_MODEL_FIT_SCORE = "var_ms2_elution_model_fit_score"
 
static constexpr const char * VAR_MS2_IM_XCORR_SHAPE = "var_ms2_im_xcorr_shape"
 
static constexpr const char * VAR_MS2_IM_XCORR_COELUTION = "var_ms2_im_xcorr_coelution"
 
static constexpr const char * VAR_MS2_IM_DELTA_SCORE = "var_ms2_im_delta_score"
 
static constexpr const char * VAR_MS2_IM_LOG_INTENSITY = "var_ms2_im_log_intensity"
 

Detailed Description

Schema for OpenSWATH feature scoring results table.

Member Function Documentation

◆ schema()

static std::shared_ptr< arrow::Schema > schema ( )
static

Member Data Documentation

◆ DELTA_RT

constexpr const char* DELTA_RT = "delta_rt"
staticconstexpr

◆ EXP_IM

constexpr const char* EXP_IM = "exp_im"
staticconstexpr

◆ EXP_IM_LEFTWIDTH

constexpr const char* EXP_IM_LEFTWIDTH = "exp_im_leftwidth"
staticconstexpr

◆ EXP_IM_RIGHTWIDTH

constexpr const char* EXP_IM_RIGHTWIDTH = "exp_im_rightwidth"
staticconstexpr

◆ EXP_RT

constexpr const char* EXP_RT = "exp_rt"
staticconstexpr

◆ FEATURE_ID

constexpr const char* FEATURE_ID = "feature_id"
staticconstexpr

◆ LEFT_WIDTH

constexpr const char* LEFT_WIDTH = "left_width"
staticconstexpr

◆ MS1_APEX_INTENSITY

constexpr const char* MS1_APEX_INTENSITY = "ms1_apex_intensity"
staticconstexpr

◆ MS1_AREA_INTENSITY

constexpr const char* MS1_AREA_INTENSITY = "ms1_area_intensity"
staticconstexpr

◆ MS1_DELTA_IM

constexpr const char* MS1_DELTA_IM = "ms1_delta_im"
staticconstexpr

◆ MS1_EXP_IM

constexpr const char* MS1_EXP_IM = "ms1_exp_im"
staticconstexpr

◆ MS2_APEX_INTENSITY

constexpr const char* MS2_APEX_INTENSITY = "ms2_apex_intensity"
staticconstexpr

◆ MS2_AREA_INTENSITY

constexpr const char* MS2_AREA_INTENSITY = "ms2_area_intensity"
staticconstexpr

◆ MS2_DELTA_IM

constexpr const char* MS2_DELTA_IM = "ms2_delta_im"
staticconstexpr

◆ MS2_EXP_IM

constexpr const char* MS2_EXP_IM = "ms2_exp_im"
staticconstexpr

◆ MS2_EXP_IM_LEFTWIDTH

constexpr const char* MS2_EXP_IM_LEFTWIDTH = "ms2_exp_im_leftwidth"
staticconstexpr

◆ MS2_EXP_IM_RIGHTWIDTH

constexpr const char* MS2_EXP_IM_RIGHTWIDTH = "ms2_exp_im_rightwidth"
staticconstexpr

◆ MS2_TOTAL_AREA_INTENSITY

constexpr const char* MS2_TOTAL_AREA_INTENSITY = "ms2_total_area_intensity"
staticconstexpr

◆ MS2_TOTAL_MI

constexpr const char* MS2_TOTAL_MI = "ms2_total_mi"
staticconstexpr

◆ NORM_RT

constexpr const char* NORM_RT = "norm_rt"
staticconstexpr

◆ PRECURSOR_ID

constexpr const char* PRECURSOR_ID = "precursor_id"
staticconstexpr

◆ RIGHT_WIDTH

constexpr const char* RIGHT_WIDTH = "right_width"
staticconstexpr

◆ RUN_ID

constexpr const char* RUN_ID = "run_id"
staticconstexpr

◆ VAR_MS1_IM_MS1_DELTA_SCORE

constexpr const char* VAR_MS1_IM_MS1_DELTA_SCORE = "var_ms1_im_ms1_delta_score"
staticconstexpr

◆ VAR_MS1_ISOTOPE_CORRELATION_SCORE

constexpr const char* VAR_MS1_ISOTOPE_CORRELATION_SCORE = "var_ms1_isotope_correlation_score"
staticconstexpr

◆ VAR_MS1_ISOTOPE_OVERLAP_SCORE

constexpr const char* VAR_MS1_ISOTOPE_OVERLAP_SCORE = "var_ms1_isotope_overlap_score"
staticconstexpr

◆ VAR_MS1_MASSDEV_SCORE

constexpr const char* VAR_MS1_MASSDEV_SCORE = "var_ms1_massdev_score"
staticconstexpr

◆ VAR_MS1_MI_COMBINED_SCORE

constexpr const char* VAR_MS1_MI_COMBINED_SCORE = "var_ms1_mi_combined_score"
staticconstexpr

◆ VAR_MS1_MI_CONTRAST_SCORE

constexpr const char* VAR_MS1_MI_CONTRAST_SCORE = "var_ms1_mi_contrast_score"
staticconstexpr

◆ VAR_MS1_MI_SCORE

constexpr const char* VAR_MS1_MI_SCORE = "var_ms1_mi_score"
staticconstexpr

◆ VAR_MS1_XCORR_COELUTION

constexpr const char* VAR_MS1_XCORR_COELUTION = "var_ms1_xcorr_coelution"
staticconstexpr

◆ VAR_MS1_XCORR_COELUTION_COMBINED

constexpr const char* VAR_MS1_XCORR_COELUTION_COMBINED = "var_ms1_xcorr_coelution_combined"
staticconstexpr

◆ VAR_MS1_XCORR_COELUTION_CONTRAST

constexpr const char* VAR_MS1_XCORR_COELUTION_CONTRAST = "var_ms1_xcorr_coelution_contrast"
staticconstexpr

◆ VAR_MS1_XCORR_SHAPE

constexpr const char* VAR_MS1_XCORR_SHAPE = "var_ms1_xcorr_shape"
staticconstexpr

◆ VAR_MS1_XCORR_SHAPE_COMBINED

constexpr const char* VAR_MS1_XCORR_SHAPE_COMBINED = "var_ms1_xcorr_shape_combined"
staticconstexpr

◆ VAR_MS1_XCORR_SHAPE_CONTRAST

constexpr const char* VAR_MS1_XCORR_SHAPE_CONTRAST = "var_ms1_xcorr_shape_contrast"
staticconstexpr

◆ VAR_MS2_BSERIES_SCORE

constexpr const char* VAR_MS2_BSERIES_SCORE = "var_ms2_bseries_score"
staticconstexpr

◆ VAR_MS2_DOTPROD_SCORE

constexpr const char* VAR_MS2_DOTPROD_SCORE = "var_ms2_dotprod_score"
staticconstexpr

◆ VAR_MS2_ELUTION_MODEL_FIT_SCORE

constexpr const char* VAR_MS2_ELUTION_MODEL_FIT_SCORE = "var_ms2_elution_model_fit_score"
staticconstexpr

◆ VAR_MS2_IM_DELTA_SCORE

constexpr const char* VAR_MS2_IM_DELTA_SCORE = "var_ms2_im_delta_score"
staticconstexpr

◆ VAR_MS2_IM_LOG_INTENSITY

constexpr const char* VAR_MS2_IM_LOG_INTENSITY = "var_ms2_im_log_intensity"
staticconstexpr

◆ VAR_MS2_IM_XCORR_COELUTION

constexpr const char* VAR_MS2_IM_XCORR_COELUTION = "var_ms2_im_xcorr_coelution"
staticconstexpr

◆ VAR_MS2_IM_XCORR_SHAPE

constexpr const char* VAR_MS2_IM_XCORR_SHAPE = "var_ms2_im_xcorr_shape"
staticconstexpr

◆ VAR_MS2_INTENSITY_SCORE

constexpr const char* VAR_MS2_INTENSITY_SCORE = "var_ms2_intensity_score"
staticconstexpr

◆ VAR_MS2_ISOTOPE_CORRELATION_SCORE

constexpr const char* VAR_MS2_ISOTOPE_CORRELATION_SCORE = "var_ms2_isotope_correlation_score"
staticconstexpr

◆ VAR_MS2_ISOTOPE_OVERLAP_SCORE

constexpr const char* VAR_MS2_ISOTOPE_OVERLAP_SCORE = "var_ms2_isotope_overlap_score"
staticconstexpr

◆ VAR_MS2_LIBRARY_CORR

constexpr const char* VAR_MS2_LIBRARY_CORR = "var_ms2_library_corr"
staticconstexpr

◆ VAR_MS2_LIBRARY_DOTPROD

constexpr const char* VAR_MS2_LIBRARY_DOTPROD = "var_ms2_library_dotprod"
staticconstexpr

◆ VAR_MS2_LIBRARY_MANHATTAN

constexpr const char* VAR_MS2_LIBRARY_MANHATTAN = "var_ms2_library_manhattan"
staticconstexpr

◆ VAR_MS2_LIBRARY_RMSD

constexpr const char* VAR_MS2_LIBRARY_RMSD = "var_ms2_library_rmsd"
staticconstexpr

◆ VAR_MS2_LIBRARY_ROOTMEANSQUARE

constexpr const char* VAR_MS2_LIBRARY_ROOTMEANSQUARE = "var_ms2_library_rootmeansquare"
staticconstexpr

◆ VAR_MS2_LIBRARY_SANGLE

constexpr const char* VAR_MS2_LIBRARY_SANGLE = "var_ms2_library_sangle"
staticconstexpr

◆ VAR_MS2_LOG_SN_SCORE

constexpr const char* VAR_MS2_LOG_SN_SCORE = "var_ms2_log_sn_score"
staticconstexpr

◆ VAR_MS2_MANHATTAN_SCORE

constexpr const char* VAR_MS2_MANHATTAN_SCORE = "var_ms2_manhattan_score"
staticconstexpr

◆ VAR_MS2_MASSDEV_SCORE

constexpr const char* VAR_MS2_MASSDEV_SCORE = "var_ms2_massdev_score"
staticconstexpr

◆ VAR_MS2_MASSDEV_SCORE_WEIGHTED

constexpr const char* VAR_MS2_MASSDEV_SCORE_WEIGHTED = "var_ms2_massdev_score_weighted"
staticconstexpr

◆ VAR_MS2_MI_RATIO_SCORE

constexpr const char* VAR_MS2_MI_RATIO_SCORE = "var_ms2_mi_ratio_score"
staticconstexpr

◆ VAR_MS2_MI_SCORE

constexpr const char* VAR_MS2_MI_SCORE = "var_ms2_mi_score"
staticconstexpr

◆ VAR_MS2_MI_WEIGHTED_SCORE

constexpr const char* VAR_MS2_MI_WEIGHTED_SCORE = "var_ms2_mi_weighted_score"
staticconstexpr

◆ VAR_MS2_NORM_RT_SCORE

constexpr const char* VAR_MS2_NORM_RT_SCORE = "var_ms2_norm_rt_score"
staticconstexpr

◆ VAR_MS2_XCORR_COELUTION

constexpr const char* VAR_MS2_XCORR_COELUTION = "var_ms2_xcorr_coelution"
staticconstexpr

◆ VAR_MS2_XCORR_COELUTION_WEIGHTED

constexpr const char* VAR_MS2_XCORR_COELUTION_WEIGHTED = "var_ms2_xcorr_coelution_weighted"
staticconstexpr

◆ VAR_MS2_XCORR_SHAPE

constexpr const char* VAR_MS2_XCORR_SHAPE = "var_ms2_xcorr_shape"
staticconstexpr

◆ VAR_MS2_XCORR_SHAPE_WEIGHTED

constexpr const char* VAR_MS2_XCORR_SHAPE_WEIGHTED = "var_ms2_xcorr_shape_weighted"
staticconstexpr

◆ VAR_MS2_YSERIES_SCORE

constexpr const char* VAR_MS2_YSERIES_SCORE = "var_ms2_yseries_score"
staticconstexpr