OpenMS
Loading...
Searching...
No Matches
Static Public Member Functions | Static Public Attributes | List of all members
PSMSchema Struct Reference

Schema for peptide-spectrum match (PSM) results table. More...

#include <OpenMS/FORMAT/ArrowSchemaRegistry.h>

Collaboration diagram for PSMSchema:
[legend]

Static Public Member Functions

static std::shared_ptr< arrow::DataType > modificationsType ()
 
static std::shared_ptr< arrow::DataType > additionalScoresType ()
 
static std::shared_ptr< arrow::DataType > metavaluesType ()
 
static std::shared_ptr< arrow::Schema > schema ()
 

Static Public Attributes

static constexpr const char * SEQUENCE = "sequence"
 
static constexpr const char * PEPTIDOFORM = "peptidoform"
 
static constexpr const char * MODIFICATIONS = "modifications"
 
static constexpr const char * PRECURSOR_CHARGE = "precursor_charge"
 
static constexpr const char * POSTERIOR_ERROR_PROBABILITY = "posterior_error_probability"
 
static constexpr const char * IS_DECOY = "is_decoy"
 
static constexpr const char * CALCULATED_MZ = "calculated_mz"
 
static constexpr const char * OBSERVED_MZ = "observed_mz"
 
static constexpr const char * ADDITIONAL_SCORES = "additional_scores"
 
static constexpr const char * PROTEIN_ACCESSIONS = "protein_accessions"
 
static constexpr const char * PREDICTED_RT = "predicted_rt"
 
static constexpr const char * REFERENCE_FILE_NAME = "reference_file_name"
 
static constexpr const char * CV_PARAMS = "cv_params"
 
static constexpr const char * SCAN = "scan"
 
static constexpr const char * RT = "rt"
 
static constexpr const char * ION_MOBILITY = "ion_mobility"
 
static constexpr const char * SPECTRUM_REFERENCE = "spectrum_reference"
 
static constexpr const char * SCORE = "score"
 
static constexpr const char * SCORE_TYPE = "score_type"
 
static constexpr const char * HIGHER_SCORE_BETTER = "higher_score_better"
 
static constexpr const char * RANK = "rank"
 
static constexpr const char * PEPTIDE_IDENTIFICATION_INDEX = "peptide_identification_index"
 
static constexpr const char * PSM_METAVALUES = "psm_metavalues"
 
static constexpr const char * SPECTRUM_METAVALUES = "spectrum_metavalues"
 
static constexpr const char * RUN_IDENTIFIER = "run_identifier"
 

Detailed Description

Schema for peptide-spectrum match (PSM) results table.

Member Function Documentation

◆ additionalScoresType()

static std::shared_ptr< arrow::DataType > additionalScoresType ( )
static

◆ metavaluesType()

static std::shared_ptr< arrow::DataType > metavaluesType ( )
static

◆ modificationsType()

static std::shared_ptr< arrow::DataType > modificationsType ( )
static

◆ schema()

static std::shared_ptr< arrow::Schema > schema ( )
static

Member Data Documentation

◆ ADDITIONAL_SCORES

constexpr const char* ADDITIONAL_SCORES = "additional_scores"
staticconstexpr

◆ CALCULATED_MZ

constexpr const char* CALCULATED_MZ = "calculated_mz"
staticconstexpr

◆ CV_PARAMS

constexpr const char* CV_PARAMS = "cv_params"
staticconstexpr

◆ HIGHER_SCORE_BETTER

constexpr const char* HIGHER_SCORE_BETTER = "higher_score_better"
staticconstexpr

◆ ION_MOBILITY

constexpr const char* ION_MOBILITY = "ion_mobility"
staticconstexpr

◆ IS_DECOY

constexpr const char* IS_DECOY = "is_decoy"
staticconstexpr

◆ MODIFICATIONS

constexpr const char* MODIFICATIONS = "modifications"
staticconstexpr

◆ OBSERVED_MZ

constexpr const char* OBSERVED_MZ = "observed_mz"
staticconstexpr

◆ PEPTIDE_IDENTIFICATION_INDEX

constexpr const char* PEPTIDE_IDENTIFICATION_INDEX = "peptide_identification_index"
staticconstexpr

◆ PEPTIDOFORM

constexpr const char* PEPTIDOFORM = "peptidoform"
staticconstexpr

◆ POSTERIOR_ERROR_PROBABILITY

constexpr const char* POSTERIOR_ERROR_PROBABILITY = "posterior_error_probability"
staticconstexpr

◆ PRECURSOR_CHARGE

constexpr const char* PRECURSOR_CHARGE = "precursor_charge"
staticconstexpr

◆ PREDICTED_RT

constexpr const char* PREDICTED_RT = "predicted_rt"
staticconstexpr

◆ PROTEIN_ACCESSIONS

constexpr const char* PROTEIN_ACCESSIONS = "protein_accessions"
staticconstexpr

◆ PSM_METAVALUES

constexpr const char* PSM_METAVALUES = "psm_metavalues"
staticconstexpr

◆ RANK

constexpr const char* RANK = "rank"
staticconstexpr

◆ REFERENCE_FILE_NAME

constexpr const char* REFERENCE_FILE_NAME = "reference_file_name"
staticconstexpr

◆ RT

constexpr const char* RT = "rt"
staticconstexpr

◆ RUN_IDENTIFIER

constexpr const char* RUN_IDENTIFIER = "run_identifier"
staticconstexpr

◆ SCAN

constexpr const char* SCAN = "scan"
staticconstexpr

◆ SCORE

constexpr const char* SCORE = "score"
staticconstexpr

◆ SCORE_TYPE

constexpr const char* SCORE_TYPE = "score_type"
staticconstexpr

◆ SEQUENCE

constexpr const char* SEQUENCE = "sequence"
staticconstexpr

◆ SPECTRUM_METAVALUES

constexpr const char* SPECTRUM_METAVALUES = "spectrum_metavalues"
staticconstexpr

◆ SPECTRUM_REFERENCE

constexpr const char* SPECTRUM_REFERENCE = "spectrum_reference"
staticconstexpr