Quantitative and associated data for a protein. More...

#include <OpenMS/ANALYSIS/QUANTITATION/PeptideAndProteinQuant.h>

Collaboration diagram for PeptideAndProteinQuant::ProteinData:

Public Member Functions
	ProteinData ()=default
	constructor

Public Attributes
std::map< String, SampleAbundances >	peptide_abundances
	mapping: peptide (unmodified) -> sample -> abundance

std::map< String, SampleAbundances >	peptide_psm_counts

std::map< String, std::map< UInt, double > >	channel_level_abundances
	mapping: filename -> channel/label -> abundance

std::map< String, UInt64 >	file_level_psm_counts
	mapping: filename -> PSM counts

SampleAbundances	total_abundances
	mapping: sample -> total abundance

SampleAbundances	total_psm_counts
	spectral counting-based abundances

SampleAbundances	total_distinct_peptides
	number of distinct peptide sequences

Size	psm_count = 0
	total number of PSMs mapping to this protein

Detailed Description

Quantitative and associated data for a protein.

Constructor & Destructor Documentation

◆ ProteinData()

ProteinData ( )

default

constructor

Member Data Documentation

◆ channel_level_abundances

std::map<String, std::map<UInt, double> > channel_level_abundances

mapping: filename -> channel/label -> abundance

◆ file_level_psm_counts

std::map<String, UInt64> file_level_psm_counts

mapping: filename -> PSM counts

◆ peptide_abundances

std::map<String, SampleAbundances> peptide_abundances

mapping: peptide (unmodified) -> sample -> abundance

◆ peptide_psm_counts

std::map<String, SampleAbundances> peptide_psm_counts

◆ psm_count

Size psm_count = 0

total number of PSMs mapping to this protein

◆ total_abundances

SampleAbundances total_abundances

mapping: sample -> total abundance

◆ total_distinct_peptides

SampleAbundances total_distinct_peptides

number of distinct peptide sequences

◆ total_psm_counts

SampleAbundances total_psm_counts

spectral counting-based abundances

Public Member Functions

Public Attributes