Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

#include <OpenMS/ANALYSIS/ID/ProSEAlgorithm.h>

Collaboration diagram for ProSEAlgorithm::AnnotatedHit_:

Static Public Member Functions
static bool	hasBetterScore (const AnnotatedHit_ &a, const AnnotatedHit_ &b)

Public Attributes
AASequence	sequence

double	score = 0
	main score

double	delta_mass = 0.0
	mass difference for open search (Da)

float	prefix_fraction = 0
	fraction of annotated b-ions

float	suffix_fraction = 0
	fraction of annotated y-ions

float	mean_error = 0.0f
	mean absolute fragment mass error

int	isotope_error = 0
	isotope offset used for this PSM

uint16_t	applied_charge = 0
	precursor charge used for this PSM

uint16_t	matched_b_ions = 0
	number of matched b-ions

uint16_t	matched_y_ions = 0
	number of matched y-ions

Detailed Description

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space.

Member Function Documentation

◆ hasBetterScore()

static bool hasBetterScore	(	const AnnotatedHit_ &	a,
		const AnnotatedHit_ &	b
	)

inlinestatic

References ProSEAlgorithm::AnnotatedHit_::score, and ProSEAlgorithm::AnnotatedHit_::sequence.

Member Data Documentation

◆ applied_charge

uint16_t applied_charge = 0

precursor charge used for this PSM

◆ delta_mass

double delta_mass = 0.0

mass difference for open search (Da)

◆ isotope_error

int isotope_error = 0

isotope offset used for this PSM

◆ matched_b_ions

uint16_t matched_b_ions = 0

number of matched b-ions

◆ matched_y_ions

uint16_t matched_y_ions = 0

number of matched y-ions

◆ mean_error

float mean_error = 0.0f

mean absolute fragment mass error

◆ prefix_fraction

float prefix_fraction = 0

fraction of annotated b-ions

◆ score

double score = 0

main score

Referenced by ProSEAlgorithm::AnnotatedHit_::hasBetterScore().

◆ sequence

AASequence sequence