ProteinModificationSummary Struct Reference

Map a protein position to all observed modifications and associated statistics. More...

#include <OpenMS/METADATA/ProteinModificationSummary.h>

Collaboration diagram for ProteinModificationSummary:

Classes
struct	Statistics
	basic modification statistic More...

Public Types
using	ModificationsToStatistics = std::map< const ResidueModification *, Statistics >
using	AALevelModificationSummary = std::map< size_t, ModificationsToStatistics >

Public Member Functions
bool	operator== (const ProteinModificationSummary &rhs) const
	comparison operator More...

Public Attributes
AALevelModificationSummary	AALevelSummary
	position -> modification -> statistic (counts, etc.) More...

Detailed Description

Map a protein position to all observed modifications and associated statistics.

For example, allows storing that position 10 in the protein carries Oxidation (M) and was observed in 123 PSMs. Note: Implementation uses a std::map, thus accessing a location not present in the map with operator[] will value construct an empty map at that location. Like with std::maps check first if the key exists.

Member Typedef Documentation

AALevelModificationSummary

using AALevelModificationSummary = std::map<size_t, ModificationsToStatistics>

ModificationsToStatistics

using ModificationsToStatistics = std::map<const ResidueModification*, Statistics>

Member Function Documentation

operator==()

bool operator==

(

const ProteinModificationSummary &

rhs

)

const

comparison operator

Member Data Documentation

AALevelSummary

AALevelModificationSummary AALevelSummary

position -> modification -> statistic (counts, etc.)