SimpleSearchEngineAlgorithm::AnnotatedHit_ Struct Reference

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space. More...

#include <OpenMS/ANALYSIS/ID/SimpleSearchEngineAlgorithm.h>

Collaboration diagram for SimpleSearchEngineAlgorithm::AnnotatedHit_:

Static Public Member Functions
static bool	hasBetterScore (const AnnotatedHit_ &a, const AnnotatedHit_ &b)

Public Attributes
StringView	sequence
SignedSize	peptide_mod_index
	enumeration index of the non-RNA peptide modification
double	score = 0
	main score
float	prefix_fraction = 0
	fraction of annotated b-ions
float	suffix_fraction = 0
	fraction of annotated y-ions
float	mean_error = 0.0f
	mean absolute fragment mass error
int	isotope_error = 0
uint16_t	matched_b_ions = 0
	number of matched b-ions
uint16_t	matched_y_ions = 0
	number of matched y-ions

Detailed Description

Slimmer structure as storing all scored candidates in PeptideHit objects takes too much space.

Member Function Documentation

hasBetterScore()

static bool hasBetterScore ( const AnnotatedHit_ &  a, const AnnotatedHit_ &  b  )

inlinestatic

References SimpleSearchEngineAlgorithm::AnnotatedHit_::peptide_mod_index, SimpleSearchEngineAlgorithm::AnnotatedHit_::score, and SimpleSearchEngineAlgorithm::AnnotatedHit_::sequence.

Member Data Documentation

isotope_error

int isotope_error = 0

matched_b_ions

uint16_t matched_b_ions = 0

number of matched b-ions

matched_y_ions

uint16_t matched_y_ions = 0

number of matched y-ions

mean_error

float mean_error = 0.0f

mean absolute fragment mass error

peptide_mod_index

SignedSize peptide_mod_index

enumeration index of the non-RNA peptide modification

Referenced by SimpleSearchEngineAlgorithm::AnnotatedHit_::hasBetterScore().

prefix_fraction

float prefix_fraction = 0

fraction of annotated b-ions

score

double score = 0

main score

Referenced by SimpleSearchEngineAlgorithm::AnnotatedHit_::hasBetterScore().

sequence

StringView sequence

Referenced by SimpleSearchEngineAlgorithm::AnnotatedHit_::hasBetterScore().

suffix_fraction

float suffix_fraction = 0

fraction of annotated y-ions