OpenMS  2.7.0
List of all members
IdentificationHit Class Reference

Represents a object which can store the information of an analysisXML instance. More...

#include <OpenMS/METADATA/IdentificationHit.h>

Inheritance diagram for IdentificationHit:
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Collaboration diagram for IdentificationHit:
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Public Member Functions

constructors,destructors,assignment operator
 IdentificationHit ()
 Default constructor. More...
 
 IdentificationHit (const IdentificationHit &)=default
 Copy constructor. More...
 
virtual ~IdentificationHit ()
 Destructor. More...
 
 IdentificationHit (IdentificationHit &&)=default
 Move constructor. More...
 
IdentificationHitoperator= (const IdentificationHit &)=default
 Assignment operator. More...
 
IdentificationHitoperator= (IdentificationHit &&) &=default
 Move assignment operator. More...
 
bool operator== (const IdentificationHit &rhs) const
 Equality operator. More...
 
bool operator!= (const IdentificationHit &rhs) const
 Inequality operator. More...
 
- Public Member Functions inherited from MetaInfoInterface
 MetaInfoInterface ()
 Constructor. More...
 
 MetaInfoInterface (const MetaInfoInterface &rhs)
 Copy constructor. More...
 
 MetaInfoInterface (MetaInfoInterface &&) noexcept
 Move constructor. More...
 
 ~MetaInfoInterface ()
 Destructor. More...
 
MetaInfoInterfaceoperator= (const MetaInfoInterface &rhs)
 Assignment operator. More...
 
MetaInfoInterfaceoperator= (MetaInfoInterface &&) noexcept
 Move assignment operator. More...
 
bool operator== (const MetaInfoInterface &rhs) const
 Equality operator. More...
 
bool operator!= (const MetaInfoInterface &rhs) const
 Equality operator. More...
 
const DataValuegetMetaValue (const String &name, const DataValue &default_value=DataValue::EMPTY) const
 Returns the value corresponding to a string, or a default value (default: DataValue::EMPTY) if not found. More...
 
const DataValuegetMetaValue (UInt index, const DataValue &default_value=DataValue::EMPTY) const
 Returns the value corresponding to an index, or a default value (default: DataValue::EMPTY) if not found. More...
 
bool metaValueExists (const String &name) const
 Returns whether an entry with the given name exists. More...
 
bool metaValueExists (UInt index) const
 Returns whether an entry with the given index exists. More...
 
void setMetaValue (const String &name, const DataValue &value)
 Sets the DataValue corresponding to a name. More...
 
void setMetaValue (UInt index, const DataValue &value)
 Sets the DataValue corresponding to an index. More...
 
void removeMetaValue (const String &name)
 Removes the DataValue corresponding to name if it exists. More...
 
void removeMetaValue (UInt index)
 Removes the DataValue corresponding to index if it exists. More...
 
void addMetaValues (const MetaInfoInterface &from)
 function to copy all meta values from one object to this one More...
 
void getKeys (std::vector< String > &keys) const
 Fills the given vector with a list of all keys for which a value is set. More...
 
void getKeys (std::vector< UInt > &keys) const
 Fills the given vector with a list of all keys for which a value is set. More...
 
bool isMetaEmpty () const
 Returns if the MetaInfo is empty. More...
 
void clearMetaInfo ()
 Removes all meta values. More...
 

Accessors

String id_
 identifier More...
 
Int charge_
 peptide charge More...
 
double calculated_mass_to_charge_
 calculated mass to charge ratio More...
 
double experimental_mass_to_charge_
 experimental mass to charge ratio More...
 
String name_
 name More...
 
bool pass_threshold_
 pass threshold More...
 
Int rank_
 rank of the peptide More...
 
void setId (const String &id)
 sets the identifier More...
 
const StringgetId () const
 returns the id More...
 
void setCharge (Int charge)
 sets the charge state of the peptide More...
 
Int getCharge () const
 returns the charge state More...
 
void setCalculatedMassToCharge (double mz)
 sets the calculated mass to charge ratio More...
 
double getCalculatedMassToCharge () const
 returns the calculated mass to charge ratio More...
 
void setExperimentalMassToCharge (double mz)
 sets the experimental mass to charge ratio More...
 
double getExperimentalMassToCharge () const
 returns the experimental mass to charge More...
 
void setName (const String &name)
 sets the name More...
 
const StringgetName () const
 returns the name More...
 
void setPassThreshold (bool pass)
 sets whether the peptide passed the threshold More...
 
bool getPassThreshold () const
 returns whether the peptide passed the threshold More...
 
void setRank (Int rank)
 set the rank of the peptide More...
 
Int getRank () const
 returns the rank of the peptide More...
 

Additional Inherited Members

- Static Public Member Functions inherited from MetaInfoInterface
static MetaInfoRegistrymetaRegistry ()
 Returns a reference to the MetaInfoRegistry. More...
 
- Protected Member Functions inherited from MetaInfoInterface
void createIfNotExists_ ()
 Creates the MetaInfo object if it does not exist. More...
 
- Protected Attributes inherited from MetaInfoInterface
MetaInfometa_
 Pointer to the MetaInfo object (0 by default) More...
 

Detailed Description

Represents a object which can store the information of an analysisXML instance.

Todo:
docu (Andreas)

Constructor & Destructor Documentation

◆ IdentificationHit() [1/3]

Default constructor.

◆ IdentificationHit() [2/3]

IdentificationHit ( const IdentificationHit )
default

Copy constructor.

◆ ~IdentificationHit()

virtual ~IdentificationHit ( )
virtual

Destructor.

◆ IdentificationHit() [3/3]

Move constructor.

Member Function Documentation

◆ getCalculatedMassToCharge()

double getCalculatedMassToCharge ( ) const

returns the calculated mass to charge ratio

◆ getCharge()

Int getCharge ( ) const

returns the charge state

◆ getExperimentalMassToCharge()

double getExperimentalMassToCharge ( ) const

returns the experimental mass to charge

◆ getId()

const String& getId ( ) const

returns the id

◆ getName()

const String& getName ( ) const

returns the name

◆ getPassThreshold()

bool getPassThreshold ( ) const

returns whether the peptide passed the threshold

◆ getRank()

Int getRank ( ) const

returns the rank of the peptide

◆ operator!=()

bool operator!= ( const IdentificationHit rhs) const

Inequality operator.

◆ operator=() [1/2]

IdentificationHit& operator= ( const IdentificationHit )
default

Assignment operator.

◆ operator=() [2/2]

IdentificationHit& operator= ( IdentificationHit &&  ) &
default

Move assignment operator.

◆ operator==()

bool operator== ( const IdentificationHit rhs) const

Equality operator.

◆ setCalculatedMassToCharge()

void setCalculatedMassToCharge ( double  mz)

sets the calculated mass to charge ratio

◆ setCharge()

void setCharge ( Int  charge)

sets the charge state of the peptide

◆ setExperimentalMassToCharge()

void setExperimentalMassToCharge ( double  mz)

sets the experimental mass to charge ratio

◆ setId()

void setId ( const String id)

sets the identifier

◆ setName()

void setName ( const String name)

sets the name

◆ setPassThreshold()

void setPassThreshold ( bool  pass)

sets whether the peptide passed the threshold

◆ setRank()

void setRank ( Int  rank)

set the rank of the peptide

Member Data Documentation

◆ calculated_mass_to_charge_

double calculated_mass_to_charge_
protected

calculated mass to charge ratio

◆ charge_

Int charge_
protected

peptide charge

◆ experimental_mass_to_charge_

double experimental_mass_to_charge_
protected

experimental mass to charge ratio

◆ id_

String id_
protected

identifier

◆ name_

String name_
protected

name

◆ pass_threshold_

bool pass_threshold_
protected

pass threshold

◆ rank_

Int rank_
protected

rank of the peptide