PercolatorInfile Class Reference

Class for storing Percolator tab-delimited input files. More...

#include <OpenMS/FORMAT/PercolatorInfile.h>

Static Public Member Functions
static void	store (const String &pin_file, const std::vector< PeptideIdentification > &peptide_ids, const StringList &feature_set, const std::string &enz, int min_charge, int max_charge)
static String	getScanIdentifier (const PeptideIdentification &pid, size_t index)

Static Protected Member Functions
static TextFile	preparePin_ (const std::vector< PeptideIdentification > &peptide_ids, const StringList &feature_set, const std::string &enz, int min_charge, int max_charge)
static Int	getScanNumber_ (const String &scan_identifier)
static bool	isEnz_ (const char &n, const char &c, const std::string &enz)
static Size	countEnzymatic_ (const String &peptide, const std::string &enz)

Detailed Description

Class for storing Percolator tab-delimited input files.

Member Function Documentation

countEnzymatic_()

static Size countEnzymatic_ ( const String &  peptide, const std::string &  enz  )

staticprotected

getScanIdentifier()

static String getScanIdentifier ( const PeptideIdentification &  pid, size_t  index  )

static

getScanNumber_()

static Int getScanNumber_ ( const String &  scan_identifier )

staticprotected

isEnz_()

static bool isEnz_ ( const char &  n, const char &  c, const std::string &  enz  )

staticprotected

preparePin_()

static TextFile preparePin_ ( const std::vector< PeptideIdentification > &  peptide_ids, const StringList &  feature_set, const std::string &  enz, int  min_charge, int  max_charge  )

staticprotected

store()

static void store ( const String &  pin_file, const std::vector< PeptideIdentification > &  peptide_ids, const StringList &  feature_set, const std::string &  enz, int  min_charge, int  max_charge  )

static