OpenMS
SvmTheoreticalSpectrumGeneratorTrainer Member List

This is the complete list of members for SvmTheoreticalSpectrumGeneratorTrainer, including all inherited members.

check_defaults_DefaultParamHandlerprotected
countIntensities_(const PeakSpectrum &spectrum, const AASequence &annotation, const IonType &type, std::map< std::pair< IonType, Size >, std::vector< double > > &observed_intensities, double tolerance, Size number_of_regions)SvmTheoreticalSpectrumGeneratorTrainerprivate
DefaultParamHandler(const String &name)DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)DefaultParamHandler
DefaultParamHandler()DefaultParamHandlerprivate
defaults_DefaultParamHandlerprotected
defaultsToParam_()DefaultParamHandlerprotected
DescriptorSet typedefSvmTheoreticalSpectrumGeneratorTrainerprivate
error_name_DefaultParamHandlerprotected
getDefaults() constDefaultParamHandler
getName() constDefaultParamHandler
getParameters() constDefaultParamHandler
getSubsections() constDefaultParamHandler
IonType typedefSvmTheoreticalSpectrumGeneratorTrainerprivate
normalizeIntensity(PeakSpectrum &S) constSvmTheoreticalSpectrumGeneratorTrainer
ObservedIntensMap typedefSvmTheoreticalSpectrumGeneratorTrainerprivate
operator=(const SvmTheoreticalSpectrumGeneratorTrainer &tsg)SvmTheoreticalSpectrumGeneratorTrainer
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)DefaultParamHandler
operator==(const DefaultParamHandler &rhs) constDefaultParamHandlervirtual
param_DefaultParamHandlerprotected
setName(const String &name)DefaultParamHandler
setParameters(const Param &param)DefaultParamHandler
subsections_DefaultParamHandlerprotected
SvmTheoreticalSpectrumGeneratorTrainer()SvmTheoreticalSpectrumGeneratorTrainer
SvmTheoreticalSpectrumGeneratorTrainer(const SvmTheoreticalSpectrumGeneratorTrainer &source)SvmTheoreticalSpectrumGeneratorTrainer
trainModel(const PeakMap &spectra, const std::vector< AASequence > &annotations, const String &filename, Int precursor_charge)SvmTheoreticalSpectrumGeneratorTrainer
trainSecondaryTypes_(TextFile &info_outfile, Size number_of_regions, Size number_of_intensity_levels, ObservedIntensMap &observed_intensities, const std::vector< IonType > &ion_types, const std::vector< bool > &is_primary)SvmTheoreticalSpectrumGeneratorTrainerprivate
updateMembers_()DefaultParamHandlerprotectedvirtual
warn_empty_defaults_DefaultParamHandlerprotected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")DefaultParamHandlerstatic
writeTrainingFile_(std::vector< DescriptorSet > &training_input, std::vector< double > &training_output, const String &filename)SvmTheoreticalSpectrumGeneratorTrainerprotected
~DefaultParamHandler()DefaultParamHandlervirtual
~SvmTheoreticalSpectrumGeneratorTrainer() overrideSvmTheoreticalSpectrumGeneratorTrainer