SvmTheoreticalSpectrumGeneratorTrainer Member List

This is the complete list of members for SvmTheoreticalSpectrumGeneratorTrainer, including all inherited members.

check_defaults_	DefaultParamHandler	protected
countIntensities_(const PeakSpectrum &spectrum, const AASequence &annotation, const IonType &type, std::map< std::pair< IonType, Size >, std::vector< double > > &observed_intensities, double tolerance, Size number_of_regions)	SvmTheoreticalSpectrumGeneratorTrainer	private
DefaultParamHandler(const String &name)	DefaultParamHandler
DefaultParamHandler(const DefaultParamHandler &rhs)	DefaultParamHandler
DefaultParamHandler()	DefaultParamHandler	private
defaults_	DefaultParamHandler	protected
defaultsToParam_()	DefaultParamHandler	protected
DescriptorSet typedef	SvmTheoreticalSpectrumGeneratorTrainer	private
error_name_	DefaultParamHandler	protected
getDefaults() const	DefaultParamHandler
getName() const	DefaultParamHandler
getParameters() const	DefaultParamHandler
getSubsections() const	DefaultParamHandler
IonType typedef	SvmTheoreticalSpectrumGeneratorTrainer	private
normalizeIntensity(PeakSpectrum &S) const	SvmTheoreticalSpectrumGeneratorTrainer
ObservedIntensMap typedef	SvmTheoreticalSpectrumGeneratorTrainer	private
operator=(const SvmTheoreticalSpectrumGeneratorTrainer &tsg)	SvmTheoreticalSpectrumGeneratorTrainer
OpenMS::DefaultParamHandler::operator=(const DefaultParamHandler &rhs)	DefaultParamHandler
operator==(const DefaultParamHandler &rhs) const	DefaultParamHandler	virtual
param_	DefaultParamHandler	protected
setName(const String &name)	DefaultParamHandler
setParameters(const Param &param)	DefaultParamHandler
subsections_	DefaultParamHandler	protected
SvmTheoreticalSpectrumGeneratorTrainer()	SvmTheoreticalSpectrumGeneratorTrainer
SvmTheoreticalSpectrumGeneratorTrainer(const SvmTheoreticalSpectrumGeneratorTrainer &source)	SvmTheoreticalSpectrumGeneratorTrainer
trainModel(const PeakMap &spectra, const std::vector< AASequence > &annotations, const String &filename, Int precursor_charge)	SvmTheoreticalSpectrumGeneratorTrainer
trainSecondaryTypes_(TextFile &info_outfile, Size number_of_regions, Size number_of_intensity_levels, ObservedIntensMap &observed_intensities, const std::vector< IonType > &ion_types, const std::vector< bool > &is_primary)	SvmTheoreticalSpectrumGeneratorTrainer	private
updateMembers_()	DefaultParamHandler	protectedvirtual
warn_empty_defaults_	DefaultParamHandler	protected
writeParametersToMetaValues(const Param &write_this, MetaInfoInterface &write_here, const String &key_prefix="")	DefaultParamHandler	static
writeTrainingFile_(std::vector< DescriptorSet > &training_input, std::vector< double > &training_output, const String &filename)	SvmTheoreticalSpectrumGeneratorTrainer	protected
~DefaultParamHandler()	DefaultParamHandler	virtual
~SvmTheoreticalSpectrumGeneratorTrainer() override	SvmTheoreticalSpectrumGeneratorTrainer