OpenMS
IdentificationDataConverter Member List

This is the complete list of members for IdentificationDataConverter, including all inherited members.

addMzTabMoleculeParentContext_(const IdentificationData::ParentMatch &match, MzTabOligonucleotideSectionRow &row)IdentificationDataConverterprotectedstatic
addMzTabMoleculeParentContext_(const IdentificationData::ParentMatch &match, MzTabPeptideSectionRow &row)IdentificationDataConverterprotectedstatic
addMzTabSEScores_(const std::map< IdentificationData::ScoreTypeRef, Size > &scores, std::map< Size, MzTabParameter > &output)IdentificationDataConverterprotectedstatic
exportConsensusIDs(ConsensusMap &consensus, bool clear_original=true)IdentificationDataConverterstatic
exportDBSearchParameters_(IdentificationData::SearchParamRef ref)IdentificationDataConverterprotectedstatic
exportFeatureIDs(FeatureMap &features, bool clear_original=true)IdentificationDataConverterstatic
exportIDs(const IdentificationData &id_data, std::vector< ProteinIdentification > &proteins, std::vector< PeptideIdentification > &peptides, bool export_ids_wo_scores=false)IdentificationDataConverterstatic
exportMSRunInformation_(IdentificationData::ProcessingStepRef step_ref, ProteinIdentification &protein)IdentificationDataConverterprotectedstatic
exportMzTab(const IdentificationData &id_data)IdentificationDataConverterstatic
exportObservationMatchToMzTab_(const String &sequence, const IdentificationData::ObservationMatch &match, double calc_mass, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map, std::map< IdentificationData::InputFileRef, Size > &file_map)IdentificationDataConverterinlineprotectedstatic
exportParentMatches(const IdentificationData::ParentMatches &parent_matches, PeptideHit &hit)IdentificationDataConverterstatic
exportParentSequenceToMzTab_(const IdentificationData::ParentSequence &parent, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map)IdentificationDataConverterinlineprotectedstatic
exportPeptideOrOligoToMzTab_(const IdentSeq &identified, std::vector< MzTabSectionRow > &output, std::map< IdentificationData::ScoreTypeRef, Size > &score_map)IdentificationDataConverterinlineprotectedstatic
exportStepsAndScoresToMzTab_(const IdentificationData::AppliedProcessingSteps &steps_and_scores, MzTabParameterList &steps_out, std::map< Size, MzTabDouble > &scores_out, std::map< IdentificationData::ScoreTypeRef, Size > &score_map)IdentificationDataConverterprotectedstatic
handleFeatureExport_(Feature &feature, const IntList &indexes, IdentificationData &id_data, Size &id_counter)IdentificationDataConverterprotectedstatic
handleFeatureImport_(Feature &feature, const IntList &indexes, std::vector< PeptideIdentification > &peptides, Size &id_counter, bool clear_original)IdentificationDataConverterprotectedstatic
importConsensusIDs(ConsensusMap &consensus, bool clear_original=true)IdentificationDataConverterstatic
importDBSearchParameters_(const ProteinIdentification::SearchParameters &pisp, IdentificationData &id_data)IdentificationDataConverterprotectedstatic
importFeatureIDs(FeatureMap &features, bool clear_original=true)IdentificationDataConverterstatic
importIDs(IdentificationData &id_data, const std::vector< ProteinIdentification > &proteins, const std::vector< PeptideIdentification > &peptides)IdentificationDataConverterstatic
importSequences(IdentificationData &id_data, const std::vector< FASTAFile::FASTAEntry > &fasta, IdentificationData::MoleculeType type=IdentificationData::MoleculeType::PROTEIN, const String &decoy_pattern="")IdentificationDataConverterstatic
StepOpt typedefIdentificationDataConverterprotected