| addMonomericPolymer(MonomericPolymer mp) | BALL::NMRStarFile | |
| assignShifts(BALLToBMRBMapper &ball_to_bmrb_mapping) | BALL::NMRStarFile | |
| assignShifts(AtomContainer &ac, const String &chemical_unit, const String &aligned_ball_sequence, const String &aligned_nmrstar_sequence) | BALL::NMRStarFile | |
| CIFFile() | BALL::CIFFile | |
| CIFFile(const String &filename, File::OpenMode open_mode=std::ios::in) | BALL::CIFFile | |
| clear() | BALL::NMRStarFile | virtual |
| clearParameters() | BALL::CIFFile | |
| close() | BALL::File | |
| copy(String source_name, String destination_name, Size buffer_size=4096) | BALL::File | static |
| copyTo(const String &destination_name, Size buffer_size=4096) | BALL::File | |
| created_temp_filenames_ | BALL::File | protectedstatic |
| createTemporaryFilename(String &temporary, const String &suffix=".TMP") | BALL::File | static |
| current_datablock_ | BALL::CIFFile | protected |
| current_item_ | BALL::CIFFile | protected |
| current_saveframe_ | BALL::CIFFile | protected |
| datablocks_ | BALL::CIFFile | protected |
| datablocks_hash_ | BALL::CIFFile | protected |
| disableTransformation(Transformation transformation) | BALL::File | static |
| enableTransformation(Transformation transformation) | BALL::File | static |
| File() | BALL::File | |
| File(const String &name, OpenMode open_mode=std::ios::in) | BALL::File | |
| FLOAT_VALUE_NA | BALL::NMRStarFile | static |
| getChemicalUnitByLabel(String const &label) const | BALL::NMRStarFile | |
| getChemicalUnitByLabel(String const &label) | BALL::NMRStarFile | |
| getDatablock(const String &name) const | BALL::CIFFile | |
| getDatablock(const String &name) | BALL::CIFFile | |
| getEntryInformation() const | BALL::NMRStarFile | inline |
| getFileStream() | BALL::File | |
| getMolecularInformation() const | BALL::NMRStarFile | inline |
| getMolecularInformation() | BALL::NMRStarFile | inline |
| getMonomericPolymer(Position i) | BALL::NMRStarFile | |
| getMonomericPolymer(Position i) const | BALL::NMRStarFile | |
| getMonomericPolymer(const String &name) | BALL::NMRStarFile | |
| getMonomericPolymer(const String &name) const | BALL::NMRStarFile | |
| getMonomericPolymers() const | BALL::NMRStarFile | inline |
| getName() const | BALL::File | |
| getNMRData() const | BALL::NMRStarFile | |
| getNMRSpectrometer(Position i) | BALL::NMRStarFile | |
| getNMRSpectrometer(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometerByName(String name) | BALL::NMRStarFile | |
| getNMRSpectrometerByName(String name) const | BALL::NMRStarFile | |
| getNMRSpectrometerFieldStrength(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometerManufacturer(Position i) const | BALL::NMRStarFile | |
| getNMRSpectrometers() | BALL::NMRStarFile | inline |
| getNMRSpectrometers() const | BALL::NMRStarFile | inline |
| getNumberOfAtoms() const | BALL::NMRStarFile | |
| getNumberOfMonomericPolymers() const | BALL::NMRStarFile | inline |
| getNumberOfNMRSpectrometers() const | BALL::NMRStarFile | inline |
| getNumberOfSampleConditions() const | BALL::NMRStarFile | inline |
| getNumberOfSamples() const | BALL::NMRStarFile | inline |
| getNumberOfShiftReferenceSets() const | BALL::NMRStarFile | inline |
| getNumberOfShiftsAssigned() const | BALL::NMRStarFile | inline |
| getOpenMode() const | BALL::File | |
| getOriginalName() const | BALL::File | |
| getResidueSequence(Position i=0) const | BALL::NMRStarFile | |
| getSample(Position i) const | BALL::NMRStarFile | |
| getSample(String label) const | BALL::NMRStarFile | |
| getSampleCondition(Position i) | BALL::NMRStarFile | inline |
| getSampleCondition(Position i) const | BALL::NMRStarFile | inline |
| getSampleConditionByName(String name) | BALL::NMRStarFile | |
| getSampleConditionByName(String name) const | BALL::NMRStarFile | |
| getSampleConditions() const | BALL::NMRStarFile | inline |
| getSampleConditions() | BALL::NMRStarFile | inline |
| getSamples() const | BALL::NMRStarFile | inline |
| getShiftReferenceSet(Position i) | BALL::NMRStarFile | inline |
| getShiftReferenceSet(Position i) const | BALL::NMRStarFile | inline |
| getShiftReferenceSetByName(String name) const | BALL::NMRStarFile | |
| getShiftReferenceSetByName(String name) | BALL::NMRStarFile | |
| getShiftReferenceSets() | BALL::NMRStarFile | inline |
| getShiftReferenceSets() const | BALL::NMRStarFile | inline |
| getSize() | BALL::File | |
| getSize(String name) | BALL::File | static |
| getTransformationManager() | BALL::File | |
| getTransformationManager() const | BALL::File | |
| getType(String name, bool trace_link) | BALL::File | static |
| getType(bool trace_link) const | BALL::File | |
| hasCshifts() const | BALL::NMRStarFile | inline |
| hasDatablock(const String &name) const | BALL::CIFFile | |
| hasHshifts() const | BALL::NMRStarFile | inline |
| hasMonomericPolymer(String name) const | BALL::NMRStarFile | |
| hasNshifts() const | BALL::NMRStarFile | inline |
| hasSample(String label) const | BALL::NMRStarFile | |
| hasSampleCondition(String name) | BALL::NMRStarFile | |
| hasSampleCondition(String name) const | BALL::NMRStarFile | |
| hasShiftReferenceSet(String name) | BALL::NMRStarFile | |
| inDatablock(const char *name) | BALL::CIFFile | |
| inItem(const char *name) | BALL::CIFFile | |
| initRead_() | BALL::CIFFile | protectedvirtual |
| inSafeframe(const char *name) | BALL::CIFFile | |
| insertDatablock(const Datablock &datablock) | BALL::CIFFile | |
| INT_VALUE_NA | BALL::NMRStarFile | static |
| is_open_ | BALL::File | protected |
| is_temporary_ | BALL::File | protected |
| isAccessible(String name) | BALL::File | static |
| isAccessible() const | BALL::File | |
| isCanonized() const | BALL::File | |
| isClosed() const | BALL::File | |
| isExecutable(String name) | BALL::File | static |
| isExecutable() const | BALL::File | |
| isMonomericPolymer(String chemical_unit_label) | BALL::NMRStarFile | |
| isOpen() const | BALL::File | |
| isReadable(String name) | BALL::File | static |
| isReadable() const | BALL::File | |
| isTransformationEnabled(Transformation transformation) | BALL::File | static |
| isValid() const | BALL::File | |
| isWritable(String name) | BALL::File | static |
| isWritable() const | BALL::File | |
| MODE_APP | BALL::File | static |
| MODE_ATE | BALL::File | static |
| MODE_BINARY | BALL::File | static |
| MODE_IN | BALL::File | static |
| MODE_OUT | BALL::File | static |
| MODE_TRUNC | BALL::File | static |
| molecule_ | BALL::CIFFile | protected |
| move(const String &source_name, const String &destination_name) | BALL::File | static |
| moveTo(const String &destination_name) | BALL::File | |
| name_ | BALL::File | protected |
| NMRStarFile() | BALL::NMRStarFile | |
| NMRStarFile(const String &file_name, File::OpenMode open_mode=std::ios::in) | BALL::NMRStarFile | |
| open(const String &name, File::OpenMode open_mode=std::ios::in) | BALL::File | |
| open_mode_ | BALL::File | protected |
| OpenMode typedef | BALL::File | |
| operator!=(const NMRStarFile &f) const | BALL::NMRStarFile | |
| BALL::CIFFile::operator!=(const File &file) const | BALL::File | |
| operator==(const NMRStarFile &f) const | BALL::NMRStarFile | |
| BALL::CIFFile::operator==(const File &file) const | BALL::File | |
| original_name_ | BALL::File | protected |
| POSITION_VALUE_NA | BALL::NMRStarFile | static |
| read() | BALL::NMRStarFile | virtual |
| read(AtomContainer &ac) | BALL::NMRStarFile | |
| registerTransformation(const String &pattern, const String &exec) | BALL::File | static |
| remove(String name) | BALL::File | static |
| remove() | BALL::File | |
| rename(String old_path, String new_path) | BALL::File | static |
| renameTo(const String &new_path) | BALL::File | |
| reopen() | BALL::File | |
| reopen(File::OpenMode open_mode) | BALL::File | |
| setMolecule(Molecule *molecule) | BALL::CIFFile | |
| setName(const String &name) | BALL::File | |
| state | BALL::CIFFile | static |
| Transformation enum name | BALL::File | |
| TRANSFORMATION__EXEC enum value | BALL::File | |
| TRANSFORMATION__FILTER enum value | BALL::File | |
| TRANSFORMATION__URL enum value | BALL::File | |
| TRANSFORMATION_EXEC_PREFIX | BALL::File | static |
| TRANSFORMATION_FILE_PREFIX | BALL::File | static |
| TRANSFORMATION_FTP_PREFIX | BALL::File | static |
| TRANSFORMATION_HTTP_PREFIX | BALL::File | static |
| transformation_manager_ | BALL::File | protectedstatic |
| transformation_methods_ | BALL::File | protectedstatic |
| truncate(String path, Size size=0) | BALL::File | static |
| truncate(Size size=0) | BALL::File | |
| Type enum name | BALL::File | |
| TYPE__BLOCK_SPECIAL_FILE enum value | BALL::File | |
| TYPE__CHAR_SPECIAL_FILE enum value | BALL::File | |
| TYPE__DIRECTORY enum value | BALL::File | |
| TYPE__FIFO_SPECIAL_FILE enum value | BALL::File | |
| TYPE__REGULAR_FILE enum value | BALL::File | |
| TYPE__SOCKET enum value | BALL::File | |
| TYPE__SYMBOLIC_LINK enum value | BALL::File | |
| TYPE__UNKNOWN enum value | BALL::File | |
| unregisterTransformation(const String &pattern) | BALL::File | static |
| write() | BALL::CIFFile | virtual |
| ~CIFFile() | BALL::CIFFile | virtual |
| ~File() | BALL::File | virtual |
| ~NMRStarFile() | BALL::NMRStarFile | |
1.8.7