| ►NBALL | -*- Mode: C++; tab-width: 2; -*- |
| ►NException | |
| CBufferOverflow | |
| CCUDAError | |
| CDivisionByZero | |
| CFileNotFound | |
| CFormatUnsupported | |
| CGeneralException | |
| CGlobalExceptionHandler | |
| CIllegalPosition | |
| CIllegalSelfOperation | |
| CIllegalTreeOperation | |
| CIncompatibleIterators | |
| CIndexOverflow | |
| CIndexUnderflow | |
| CInvalidArgument | |
| CInvalidFormat | |
| CInvalidIterator | |
| CInvalidOption | Exception to be thrown if an invalid option is given |
| CInvalidRange | |
| CInvalidSize | |
| CNoBufferAvailable | |
| CNotImplemented | |
| CNotInitialized | |
| CNullPointer | |
| COutOfGrid | |
| COutOfMemory | |
| COutOfRange | |
| CParseError | |
| CPostcondition | |
| CPrecondition | |
| CSizeUnderflow | |
| CTooManyBonds | Exception to be thrown if too many bonds for one atom |
| CTooManyErrors | Exception to be thrown if too many errors occur, e.g. in ForceField |
| ►NGRAPH | |
| CEditableEdgeCopier | |
| CEditableVertexCopier | |
| CGraphTraits | |
| CIllegalStateException | |
| CPostOrderFolding | |
| CUnconnectedGraphException | |
| CUndoEliminateOperation | |
| ►NPDB | |
| CAdditionalAtomInfo | |
| CBookKeeping | |
| CRecordANISOU | |
| CRecordATOM | |
| CRecordAUTHOR | |
| CRecordCAVEAT | |
| CRecordCISPEP | |
| CRecordCOMPND | |
| CRecordCON06 | |
| CRecordCON061 | |
| CRecordCON062 | |
| CRecordCON063 | |
| CRecordCON064 | |
| CRecordCONECT | |
| ►CRecordCRYST1 | |
| CUnitCell | |
| ►CRecordDBREF | |
| CEndingDatabaseSegment | |
| CEndingSequence | |
| CInitialDatabaseSegment | |
| CInitialSequence | |
| CRecordEND | |
| CRecordENDMDL | |
| CRecordEXPDTA | |
| CRecordFORMUL | |
| CRecordFTNOTE | |
| CRecordHEADER | |
| CRecordHELIX | |
| CRecordHET | |
| CRecordHETATM | |
| CRecordHETNAM | |
| CRecordHETSYN | |
| ►CRecordHYDBND | |
| CHydrogenAtom | |
| CHydrogenPartnerAtom | |
| CRecordJRNL | |
| CRecordKEYWDS | |
| ►CRecordLINK | |
| CLinkPartner | |
| CRecordMASTER | |
| CRecordMODEL | |
| CRecordMODRES | |
| CRecordMTRIX1 | |
| CRecordMTRIX2 | |
| CRecordMTRIX3 | |
| CRecordOBSLTE | |
| CRecordORIGX1 | |
| CRecordORIGX2 | |
| CRecordORIGX3 | |
| CRecordREMARK | |
| CRecordREVDAT | |
| CRecordSCALE1 | |
| CRecordSCALE2 | |
| CRecordSCALE3 | |
| CRecordSEQADV | |
| CRecordSEQRES | |
| CRecordSHEET | |
| CRecordSIGATM | |
| CRecordSIGUIJ | |
| CRecordSITE | |
| ►CRecordSLTBRG | |
| CPartnerAtom | |
| CRecordSOURCE | |
| CRecordSPRSDE | |
| CRecordSSBOND | |
| CRecordTER | |
| CRecordTITLE | |
| CRecordTURN | |
| CRecordTVECT | |
| CRecordTypeFormat | |
| CRecordUNKNOWN | |
| CResidue | |
| ►CStructure | |
| CAtomEntry | |
| CConectAtomList | |
| CNCSMatrix | |
| CUnitCellInfo | |
| ►NPeptides | |
| CAminoAcidDescriptor | |
| ►CNameConverter | This class provides conversion of atom names between naming schemata |
| CDefault | Default values for options |
| COption | Option names |
| CPeptideBuilder | |
| ►NQSAR | |
| ►NException | |
| CConfigurationReadingError | |
| CFeatureSelectionParameterError | |
| CInconsistentUsage | |
| CInvalidActivityID | |
| CKernelParameterError | |
| CModelParameterError | |
| CNoPCAVariance | |
| CPropertyError | |
| CSingularMatrixError | |
| CTooManyPLSComponents | |
| CWrongDataType | |
| CWrongFileFormat | |
| CALLModel | |
| CAutomaticModelCreator | |
| CBayesModel | |
| CClassificationModel | |
| CClassificationValidation | |
| CConfigIO | |
| CFeatureSelection | |
| CFeatureSelectionConfiguration | |
| CGPModel | |
| CInputConfiguration | |
| CInputPartitioningConfiguration | |
| CKernel | |
| CKernelModel | |
| CKNNModel | |
| CKPCRModel | |
| CKPLSModel | |
| CLatentVariableModel | |
| CLDAModel | |
| CLibsvmModel | |
| CLinearModel | |
| CLogitModel | |
| CMLRModel | |
| CModel | |
| CModelConfiguration | |
| CModelFactory | |
| CNBModel | |
| CNonLinearModel | |
| COPLSModel | |
| CPCRModel | |
| CPLSModel | |
| CPredictionConfiguration | |
| CQSARData | |
| CRegistry | |
| CRegistryEntry | |
| CRegressionModel | |
| CRegressionValidation | |
| CRRModel | |
| CSNBModel | |
| CStatistics | |
| CSVMModel | |
| CSVRModel | |
| CValidation | |
| CValidationConfiguration | |
| ►NSimpleDownloaderHelper | |
| CBasicHelper | |
| CDLArrayHelper | |
| CDLHelper | |
| CDLThread | |
| CHelperThread | |
| CQFtpHackHelper | |
| CQFtpHackThread | |
| CUPThread | |
| ►NVIEW | |
| ►CAddBackboneModel | |
| CModelPart | |
| CAddBallAndStickModel | |
| CAddCartoonModel | |
| CAddLineModel | |
| CAddSurfaceModel | |
| CAddVanDerWaalsModel | |
| CAmberConfigurationDialog | |
| CAnimationThread | |
| CAssignBondOrderConfigurationDialog | |
| CAssignBondOrderResultsDialog | |
| CAtomBondModelBaseProcessor | |
| CAtomChargeColorProcessor | |
| CAtomDistanceColorProcessor | |
| ►CAtomOverview | |
| CApplyProcessor | |
| COverviewProcessor | |
| CBALLThread | |
| CBondProperties | |
| CBoolEditorWidget | |
| CBox | |
| CBufferedRenderer | |
| CButtonEvent | |
| CCalculateFDPBThread | |
| CCamera | |
| ►CCanvasWidget | |
| CPixmapItem | |
| CChainColorProcessor | |
| CChannelFormat | |
| CCharmmConfigurationDialog | |
| CClippingDialog | |
| CClippingPlane | |
| CColorButton | |
| CColorByGridProcessor | |
| CColorExtension2 | |
| CColorHSV | |
| CColoringSettingsDialog | |
| CColorMap | |
| CColorProcessor | |
| CColorRGBA | |
| CColorTable | |
| ►CColorUnit | |
| CNotInHexFormat | |
| CColorUnitHue | |
| CComboBoxDelegate | |
| CCompositeManager | |
| CCompositeMessage | |
| CCompositeProperties | |
| CConfigDialog | |
| CConnectionObject | |
| CContourSurfaceDialog | |
| CControlSelectionMessage | |
| CCreateRepresentationMessage | |
| CCudaVolumeRenderer | |
| CCustomColorProcessor | |
| CDataset | |
| CDatasetControl | |
| CDatasetController | |
| CDatasetMessage | |
| CDemoTutorialDialog | |
| CDeselectControlsMessage | |
| CDeviceEvent | |
| CDisc | |
| CDisplayProperties | |
| CDockableRegularData1DWidget | |
| CDockableRegularData2DWidget | |
| CDockDialog | |
| CDockingController | |
| CDockingFinishedMessage | Message to notify docking has finished |
| CDockingThread | Thread for Docking |
| CDockProgressDialog | |
| CDockResultController | |
| ►CDockResultDialog | |
| CCompare_ | |
| CDockWidget | |
| CDoubleEditorWidget | |
| CDownloadElectronDensity | |
| CDownloadPDBFile | |
| CDragLogView | |
| CEditFunctions | |
| CEditMode | |
| CEditOperation | |
| CEditOperationDialog | |
| CEditSettings | |
| CEditSingleShortcut | |
| CElementColorProcessor | |
| CEnergyMinimizerThread | Thread for EnergyMinimization |
| CExportGeometryDialog | |
| CFakeDriver | |
| CFDPBDialog | |
| CFieldLineCreator | |
| CFieldLinesDialog | |
| CFileObserver | |
| CFinishedSimulationMessage | |
| CFloatEditorWidget | |
| CForceColorProcessor | |
| CForceModel | |
| CFrameBuffer | |
| CFrameBufferFormat | |
| CGenerateCrystalDialog | |
| CGenerateCrystalThread | |
| CGenericControl | |
| CGenericSelectionMessage | |
| CGeometricControl | |
| CGeometricFitDialog | |
| CGeometricObject | |
| CGeometricObjectSelectionMessage | |
| ►CGLDisplayList | |
| CDisplayListRedeclaration | |
| CNestedDisplayList | |
| CNoDisplayListAvailable | |
| CGLOffscreenTarget | |
| ►CGLRenderer | |
| CWrongModes | |
| CGLRenderWindow | |
| CGridColorWidget | |
| CGridVisualisation | |
| CGridVisualizationDialog | |
| CHBondModelProcessor | |
| CHeadTrackingEvent | |
| CHelpViewer | |
| CHotkey | |
| CHotkeyTable | |
| CHTMLView | |
| CHTMLViewDock | |
| CIconLoader | |
| CInputDeviceDriver | |
| CInputDevPluginHandler | |
| CInputPlugin | |
| CIntEditorWidget | |
| CInteractionMode | |
| CInteractionModeManager | |
| CInterpolateColorProcessor | |
| CLabel | |
| CLabelDialog | |
| CLabelModel | |
| CLightSettings | |
| CLightSource | |
| CLine | |
| CLogEvent | Event class used for thread safe output to logview |
| CLogView | |
| CMainControl | |
| CMainControlPreferences | |
| CMaterialSettings | |
| CMDSimulationThread | Thread for MDSimulation |
| CMesh | |
| CMeshBuffer | |
| CMessage | |
| CMessageEvent | |
| CMinimizationDialog | |
| CMMFF94ConfigurationDialog | |
| CModelInformation | |
| CModelProcessor | |
| CModelSettingsDialog | |
| CModifyRepresentationDialog | |
| CModularWidget | |
| CModularWidgetPlugin | |
| CModularWidgetPluginHandler | |
| CMolecularControl | |
| CMolecularDynamicsDialog | |
| CMolecularFileDialog | |
| CMolecularStructure | |
| CMolecularTaskMessage | |
| CMoleculeColorProcessor | |
| CMotionTrackingEvent | |
| CMoveMode | |
| CMultiColorExtension | |
| CMultiLine | |
| CMyTextBrowser | |
| CNetworkPreferences | |
| CNewSelectionMessage | |
| CNotificationEvent | |
| COccupancyColorProcessor | |
| COpenBruker1DFile | |
| COpenBruker2DFile | |
| COpenSavePreferences | |
| CParsedFunctionDialog | |
| CPDBInfoEditorWidget | |
| CPeptideDialog | |
| CPickingMode | |
| CPixelFormat | |
| CPluginDialog | |
| CPluginDirectoryModel | |
| CPluginModel | |
| CPoint | |
| CPositionColorProcessor | |
| ►CPOVRenderer | |
| CPOVRendererClippingPlane | |
| CPreferences | |
| ►CPreferencesEntry | |
| CExtendedPreferencesObject | |
| CPropDeleteWidget | |
| CPropEditorWidget | |
| CPropertyEditor | |
| CPTEDialog | |
| ►CPubChemDialog | |
| CParsedResult_ | |
| CPythonHighlighter | |
| CPythonSettings | |
| CPythonValidator | |
| CPyWidget | |
| ►CQuadMesh | |
| CQuadruple | |
| CRaytraceableContourSurfaceDialog | |
| CRaytraceableGrid | |
| CRaytraceableGridController | |
| CRaytracingRenderer | |
| CRegisterHelpSystemMessage | |
| CRegularData1DWidget | |
| CRegularData2DWidget | |
| CRegularData3DController | |
| CRenderer | |
| CRenderSetup | |
| CRenderTarget | |
| CRenderToBufferFinishedEvent | |
| CRepresentation | |
| CRepresentationManager | |
| CRepresentationMessage | Base class for all messages concerning a Representation |
| CResidueNameColorProcessor | |
| CResidueNumberColorProcessor | |
| CResidueTypeColorProcessor | |
| CResolution | |
| CRotateMode | |
| ►CRTfactRenderer | |
| CRTfactData | |
| CRunGAMESSDialog | |
| CRunPythonThread | |
| CScene | |
| CSceneMessage | |
| ►CSDWidget | |
| CDefault | Default values for options |
| COption | Option names |
| CSecondaryStructureColorProcessor | |
| CServerPreferences | |
| ►CServerWidget | |
| CBALLViewServer | |
| CNotCompositeObject | |
| CSetCamera | |
| CSetClippingPlane | |
| CShortcutDialog | |
| CShortcutRegistry | |
| CShortcutTableModel | |
| CShortcutTableView | |
| CShowDisplayPropertiesMessage | |
| CShowHelpMessage | |
| CSimpleBox | |
| CSimulationThread | |
| CSnapshotManagerInterface | |
| CSnapshotVisualisationDialog | |
| CSphere | |
| ►CStage | |
| CMaterial | |
| CRaytracingMaterial | |
| CStageSettings | |
| CStereoSettingsDialog | |
| CSTLRenderer | |
| CStringEditorWidget | |
| CSyncClippingPlanesMessage | |
| CTemperatureFactorColorProcessor | |
| CTestFramework | |
| ►CTextEditorWidget | |
| CLineNumbers | |
| CTilingRenderer | |
| CTrajectoryController | |
| CTransformationEvent6D | |
| CTransformationMessage | |
| CTreeWidget | |
| CTRenderWindow | |
| CTube | |
| CTwoColoredLine | |
| CTwoColoredTube | |
| CUIntEditorWidget | |
| CUIOperationMode | |
| CUndoManagerDialog | |
| CUpdateRepresentationThread | |
| CVectorGridController | |
| CVertex | |
| CVertex2 | |
| CVIEWPlugin | |
| CVRMLRenderer | |
| ►CXML3DRenderer | |
| CXML3DRendererClippingPlane | |
| CAddHydrogenProcessor | |
| CAddition | |
| CAdvancedElectrostatic | |
| CAmberBend | |
| CAmberEvaluation | |
| ►CAmberFF | |
| CDefault | |
| COption | |
| CAmberNonBonded | |
| CAmberStretch | |
| ►CAmberTorsion | |
| CSingleAmberTorsion | |
| CAmiraMeshFile | |
| CAnisotropyShiftProcessor | |
| CAntechamberFile | |
| CAromaticBondsPredicate | |
| ►CAromaticityProcessor | This processor provides methods for detection and assignment of aromaticity |
| CDefault | Default values for options |
| COption | Option names |
| ►CAromaticRingStacking | |
| CDefault | |
| COption | |
| CAssignBaseProcessor | Only used for deriving interface |
| ►CAssignBondOrderProcessor | Assignment of bond orders from topology information |
| CAlgorithm | |
| CDefault | Default values for options |
| COption | Option names |
| CAssignChargeProcessor | |
| CAssignRadiusProcessor | |
| CAssignTypeNameProcessor | |
| CAssignTypeProcessor | |
| ►CAStarBondOrderStrategy | |
| CDefault | |
| CHeuristic | |
| COption | Option names |
| ►CAtom | |
| CBondIteratorTraits | |
| CAtomBijection | |
| CAtomContainer | |
| CAtomContainerIteratorTraits | |
| CAtomicPolarizabilities | |
| CAtomInformationContent | |
| CAtomIteratorTraits | |
| CAtomNamePredicate | |
| CAtomTypePredicate | |
| CAtomTyper | |
| CAtomTypes | |
| CAtomVector | |
| CAutoDeletable | |
| CAxialPredicate | |
| CBackBonePredicate | |
| CBalabanIndexJ | |
| CBALLPlugin | |
| CBaseIterator | |
| CBendComponent | |
| CBidirectionalIterator | Mutable bidirectional iterator |
| CBinaryFileAdaptor | |
| ►CBinaryFingerprintMethods | This class provides efficient similarity calculation functionality for 2D binary fingerprints |
| CDefault | |
| COption | |
| CBinaryFunctor | |
| CBinaryPredicate | |
| CBinaryProcessor | |
| ►CBindingPocketProcessor | |
| CDefault | |
| COption | |
| ►CBit | |
| CIllegalOperation | |
| CBitVector | |
| ►CBond | |
| CNotBound | |
| CBondOrderAssignment | A solution to the bond order assignment problem |
| CBondOrderAssignmentStrategy | Base class for bond order assignment algorithms |
| CBondPolarizabilities | |
| CBoundingBoxProcessor | |
| ►CBranchAndBoundBondOrderStrategy | |
| CDefault | |
| COption | Option names |
| CBruker1DFile | |
| CBruker2DFile | |
| ►CBuildBondsProcessor | |
| CDefault | Default values for options |
| COption | Option names |
| CBurialDepth | |
| ►CBuriedPolar | |
| CDefault | |
| COption | |
| ►CCanonicalMD | |
| CAuxFactors | Helper class containing auxiliary factors |
| CCCP4File | |
| CChain | |
| CChainIteratorTraits | |
| CChainPredicate | |
| CChargePredicate | |
| CChargeRuleProcessor | |
| CCharmmBend | |
| ►CCharmmEEF1 | |
| CData | |
| CValues | |
| ►CCharmmFF | |
| CDefault | |
| COption | |
| CCharmmImproperTorsion | |
| CCharmmNonBonded | |
| CCharmmStretch | |
| ►CCharmmTorsion | |
| CSingleCharmmTorsion | |
| ►CCHPI | |
| CAromaticRing | |
| CCHGroup | |
| CDefault | |
| COption | |
| ►CCHPISlick | |
| CAromaticRing | |
| CCHGroup | |
| CDefault | |
| COption | |
| ►CCIFFile | |
| CDatablock | |
| CDatacontent | |
| CItem | |
| CSaveFrame | |
| CState | |
| CClaverieParameter | |
| CClearChargeProcessor | |
| CClearRadiusProcessor | |
| CClearShiftProcessor | |
| ►CClient | |
| CInvalidClient | |
| CNoPersistentObject | |
| CCommandlineParser | |
| CComparator | |
| CComposedEnergyProcessor | |
| ►CComposite | |
| CAncestorIteratorTraits | |
| CChildCompositeIteratorTraits | |
| CCompositeIteratorTraits | |
| CCompositeIteratorTraits | |
| CConformation | |
| CConformation4C1Predicate | |
| CConformationSet | |
| ►CConjugateGradientMinimizer | |
| CDefault | |
| COption | |
| CConnectedComponentsProcessor | |
| ►CConnectedToPredicate | |
| CCTPNode | |
| CConnectivityBase | |
| CConstant | |
| CConstantFunction | |
| CConstBidirectionalIterator | |
| CConstBinaryProcessor | |
| CConstForwardIterator | |
| CConstraint | |
| CConstRandomAccessIterator | |
| CConstUnaryProcessor | |
| ►CCosineTorsion | |
| CData | |
| CSingleData | |
| CSingleValues | |
| CValues | |
| CCreateSpectrumProcessor | |
| ►CCrystalGenerator | |
| CDefault | |
| COption | |
| ►CCrystalInfo | |
| CDefault | |
| COption | |
| CCubicFunction | |
| CCubicSpline1D | |
| CCubicSpline2D | |
| CDCDFile | |
| CDensity | |
| CDescriptor | |
| CDifferentiableScoringFunction | |
| CDiffGridBasedScoring | |
| CDirectory | |
| CDisulfidBondProcessor | |
| CDivision | |
| CDNAMutator | |
| CDockingAlgorithm | |
| CDockProblem | |
| ►CDockResult | |
| CCompare_ | |
| CScoring_ | |
| CDockResultFile | |
| CDoubleBondsPredicate | |
| CDoubleGene | |
| CDoubleParameter | |
| CDoubleTraits | |
| CDSN6File | |
| CEdgeItem | |
| CEFShiftProcessor | |
| CElectrostatic | |
| ►CElectrostaticPotentialCalculator | |
| CDefault | |
| COption | |
| CElement | |
| CElementPredicate | |
| CEmbeddable | |
| ►CEmpiricalHSShiftProcessor | |
| CDefault | Default values for options |
| COption | Option names |
| CPropertiesForShift_ | |
| CShiftHyperSurface_ | |
| CEnergeticEvaluation | |
| ►CEnergyMinimizer | |
| CDefault | |
| COption | |
| CEnergyProcessor | |
| ►CEnumerator | |
| CIteratorTraits_ | |
| ►CEnumeratorIndex | |
| CIncompatibleIndex | |
| ►CEvolutionaryDocking | |
| CDefault | |
| COption | |
| CExperiment | |
| CExpression | |
| ►CExpressionParser | |
| CState | |
| CSyntaxTree | |
| CExpressionPredicate | |
| CExpressionTree | |
| CFactory | |
| CFalsePredicate | |
| ►CFDPB | |
| CBoundary | |
| CChargeDistribution | |
| CDefault | |
| CDielectricSmoothing | |
| CFastAtomStruct | |
| COption | |
| CFermiBaseFunction | |
| ►CFile | |
| CCannotWrite | |
| CFileSystem | |
| CFlexDefinition | |
| CFlexibleMolecule | |
| CFloatTraits | |
| CForceField | |
| CForceFieldComponent | |
| CForceFieldEvaluation | |
| CForceFieldParameters | |
| CFormalCharge | |
| CForwardIterator | |
| ►CFPTBondOrderStrategy | |
| CAdditionalBagProperties_ | |
| CAssignment_ | |
| CBackTrackingState_ | |
| CComputingData_ | |
| CDefault | Default option values |
| ►CDPBackTracking_ | |
| CStateComparator_ | |
| CDPBackTrackingCombiner_ | |
| CDPConfig_ | |
| CDPJoinMapComparator_ | |
| CDPTable_ | |
| CEdgeComparator_ | |
| CFPTBondOrderAssignment_ | |
| COption | Option names |
| CFragment | |
| CFragmentationalSolvation | |
| ►CFragmentDB | |
| ►CBuildBondsProcessor | |
| CConnection | |
| CNoFragmentNode | |
| CNormalizeNamesProcessor | |
| CFragmentDistanceCollector | |
| CFragmentIteratorTraits | |
| CFresnoTypes | |
| ►CGAFFCESParser | |
| ►CAPSMatcher | |
| CAPSTerm | |
| CCESelementConnectionPredicate | |
| CCESelementPredicate | |
| CCESPredicate | |
| CCESwildcardsConnectionPredicate | |
| CCESwildcardsPredicate | |
| CState | |
| CTruePredicate | |
| ►CGAFFTypeProcessor | |
| CDefault | |
| COption | |
| CTypeDefinition | Nested class definitions |
| ►CGAMESSDatFile | |
| Cblock | |
| CState | |
| ►CGAMESSLogFile | |
| CState | |
| ►CGeneralizedBornModel | |
| CDefault | |
| COption | |
| CGenericGene | |
| CGenericMolFile | |
| CGenericParameter | |
| CGeneticAlgorithm | |
| CGeneticIndividual | |
| CGeometricCenterProcessor | |
| ►CGeometricFit | |
| CDefault | |
| COption | |
| CPeak_ | |
| CRotationAngles_ | |
| CGlobalInitializer | |
| CGradient | |
| CGraphEdge | |
| CGraphFace | |
| CGraphTriangle | |
| CGraphVertex | |
| CGridAnalysis | |
| ►CGridBasedScoring | |
| CDefault | |
| CGridSetsResult | |
| COption | |
| CGridedMM | |
| CGridedPLP | |
| CHaighMallionShiftProcessor | |
| ►CHashGrid3 | |
| CBoxIteratorTraits | |
| ►CHashGridBox3 | |
| CBoxIteratorTraits | |
| CDataIteratorTraits | |
| ►CHashMap | HashMap class based on the STL map (containing serveral convenience functions) |
| CIllegalKey | HashMap illegal key exception |
| ►CHashSet | |
| CIllegalKey | |
| CIteratorTraits | |
| CNode | |
| ►CHBondProcessor | Computation of hydrogen bonds from topology information |
| CDefault | Default values for options |
| CHBond | |
| COption | Option names |
| CPredictionMethod | Default values for options |
| CResidueData | |
| CHBondShiftProcessor | |
| CHINFile | |
| ►CHMOFile | |
| CHMOCharge | |
| ►CHybridisationProcessor | |
| CAtomNames_ | |
| CDefault | Default values for options |
| CElements_ | |
| CMethod | |
| COption | Option names |
| ►CHydrogenBond | |
| CDefault | |
| COption | |
| ►CHydrogenBondSlick | |
| CDefault | |
| COption | |
| CHydrophobicVdWSurface | |
| CILPBondOrderStrategy | |
| ►CIMGDock | |
| CDefault | |
| COption | |
| ►CINIFile | |
| CIteratorTraits_ | Interface for the LineIterator |
| CSection | |
| CInRingPredicate | |
| ►CJCAMPFile | |
| CJCAMPValue | |
| ►CJohnsonBoveyShiftProcessor | |
| CRing | |
| CKCFFile | |
| CKekuliser | |
| CKernelPredicate | Kernel predicate class |
| CKernelPredicate< Atom > | |
| CKernelPredicate< Chain > | |
| CKernelPredicate< Fragment > | |
| CKernelPredicate< Molecule > | |
| CKernelPredicate< Protein > | |
| CKernelPredicate< Residue > | |
| ►CKGreedyBondOrderStrategy | |
| CDefault | |
| COption | Option names |
| ►CLennardJones | |
| CData | |
| CValues | |
| CLimits | |
| CLimits< bool > | |
| CLimits< char > | |
| CLimits< double > | |
| CLimits< float > | |
| CLimits< int > | |
| CLimits< long > | |
| CLimits< short > | |
| CLimits< signed char > | |
| CLimits< unsigned char > | |
| CLimits< unsigned int > | |
| CLimits< unsigned long > | |
| CLimits< unsigned short > | |
| CLinearBaseFunction | |
| CLineBasedFile | |
| CLineSearch | |
| ►CLipophilic | |
| CDefault | |
| COption | |
| CList | |
| CLogP | |
| CLogStream | |
| ►CLogStreamBuf | |
| CLoglineStruct | |
| CStreamStruct | |
| CLogStreamNotifier | |
| CLongDoubleTraits | |
| CMainframe | |
| CMeanAtomInformationContent | |
| ►CMicroCanonicalMD | |
| CAuxFactors | |
| ►CMMFF94 | |
| CDefault | |
| COption | |
| CMMFF94AtomType | Class to store the values of an atom type from MMFFPROP.PAR |
| CMMFF94AtomTypeEquivalences | |
| ►CMMFF94AtomTyper | |
| CAromaticType | |
| CMMFF94AtomTypes | |
| CMMFF94BendParameters | |
| CMMFF94ChargeProcessor | |
| CMMFF94ESParameters | |
| ►CMMFF94NonBonded | |
| CNonBondedPairData | |
| ►CMMFF94OutOfPlaneBend | |
| COutOfPlaneBend | |
| CMMFF94ParametersBase | |
| CMMFF94PlaneParameters | |
| ►CMMFF94StretchBend | |
| CBend | See MMFFANG.PAR |
| CStretch | |
| CStretchBend | |
| CMMFF94StretchBendParameters | |
| ►CMMFF94StretchParameters | |
| CBondData | |
| CEmpiricalBondData | |
| ►CMMFF94Torsion | |
| CTorsion | See MMFFTOR.PAR |
| CMMFF94TorsionParameters | |
| ►CMMFF94VDWParameters | |
| CVDWEntry | |
| CMMScoring | |
| ►CMOL2File | |
| CAtomStruct | |
| CBondStruct | |
| CCommentStruct | |
| CMoleculeStruct | |
| CSetStruct | A class used for storing TRIPOS sets |
| CSubstructureStruct | |
| ►CMolDB | |
| CVendorInfo | |
| ►CMolecularDynamics | |
| CDefault | |
| COption | |
| CMolecularGraph | |
| CMolecularInformation | |
| CMolecularInteractions | |
| CMolecularSimilarity | |
| CMolecularWeight | |
| CMolecule | |
| CMoleculeIteratorTraits | |
| CMoleculeObjectCreator | |
| CMoleculePredicate | |
| ►CMOLFile | |
| CAtomStruct | |
| CBondStruct | |
| CCountsStruct | |
| CProperty | |
| CMolFileFactory | |
| CMOPACInputFile | |
| CMOPACOutputFile | |
| CMPISupport | |
| CMutableConstant | |
| CMutablePower | |
| CMutator | |
| CNamedProperty | |
| CNegativePolarVdWSurface | |
| CNegativeVdWSurface | |
| ►CNMRStarFile | This class provides methods for reading and assigning chemical shifts |
| CBALLToBMRBMapper | |
| CEntryInformation | |
| ►CMolecularSystem | |
| CChemicalUnit | |
| CRelatedDB | |
| ►CMonomericPolymer | |
| CHomologDB | Database with homolog entries |
| CNMRAtomData | |
| CNMRAtomDataSet | |
| CNMRSpectrometer | |
| ►CSample | |
| CComponent | |
| CSampleCondition | |
| CShiftReferenceElement | |
| CShiftReferenceSet | |
| CNodeItem | |
| ►CNonpolarSolvation | |
| CDefault | |
| COption | |
| CNucleicAcid | |
| CNucleicAcidIteratorTraits | |
| CNucleicAcidPredicate | |
| CNucleotide | |
| CNucleotideIteratorTraits | |
| CNucleotideMapping | |
| CNucleotidePredicate | |
| CNumberOfAromaticAtoms | |
| CNumberOfAromaticBonds | |
| CNumberOfAtoms | |
| CNumberOfBonds | |
| CNumberOfBondsPredicate | |
| CNumberOfBoron | |
| CNumberOfBromine | |
| CNumberOfCarbon | |
| CNumberOfChlorine | |
| CNumberOfDoubleBonds | |
| CNumberOfFlourine | |
| CNumberOfHeavyAtoms | |
| CNumberOfHeavyBonds | |
| CNumberOfHydrogen | |
| CNumberOfHydrogenBondAcceptors | |
| CNumberOfHydrogenBondDonors | |
| CNumberOfHydrophobicAtoms | |
| CNumberOfIodine | |
| CNumberOfNitrogen | |
| CNumberOfOxygen | |
| CNumberOfPhosphorus | |
| CNumberOfRotatableBonds | |
| CNumberOfRotatableSingleBonds | |
| CNumberOfSingleBonds | |
| CNumberOfSulfur | |
| CNumberOfTripleBonds | |
| CNumericalIntegrator | |
| ►CNumericalSAS | |
| CDefault | |
| COption | |
| CObject | |
| CObjectCreator | |
| COptions | |
| ►CPair6_12InteractionEnergyProcessor | |
| CDefault | |
| COption | |
| ►CPair6_12RDFIntegrator | |
| CDefault | |
| COption | |
| ►CPairExpInteractionEnergyProcessor | |
| CDefault | |
| COption | |
| ►CPairExpRDFIntegrator | |
| CDefault | |
| COption | |
| CParameterDescription | |
| CParameters | |
| CParameterSection | |
| CParamFile | |
| CParsedFunction | |
| CPartialBondOrderAssignment | A full or partial solution to the AStar-based bond order assignment problem |
| CPartialChargeBase | |
| CPartialChargeProcessor | |
| CPath | |
| CPB | |
| CPBScoring | |
| ►CPCMCavFreeEnergyProcessor | |
| CDefault | |
| COption | |
| CPDBAtom | |
| CPDBAtomIteratorTraits | |
| ►CPDBFile | |
| CDefault | |
| COption | |
| CPDBInfo | |
| CPDBRecords | |
| CPeak | |
| CPeakList | |
| CPeptideCapProcessor | This processor adds ACE-N and NME-C caps to proteins |
| ►CPeriodicBoundary | |
| CDefault | Default values |
| COption | |
| CPersistenceManager | |
| CPersistentObject | |
| CPharmacophoreConstraint | |
| CPiecewiseFunction | |
| CPiecewisePolynomial | |
| ►CPierottiCavFreeEnergyProcessor | |
| CDefault | |
| COption | |
| ►CPLP | |
| CNonBondedPairData | |
| CPLPScoring | |
| CPluginHandler | |
| CPluginManager | |
| CPolarity | |
| ►CPolarSolvation | |
| CDefault | |
| COption | |
| CPolarVdWSurface | |
| ►CPoseClustering | Computation of clusters of docking poses |
| CClusterProperties | |
| CClusterTreeNodeComparator | |
| CClusterTreeWriter_ | |
| CDefault | Default values for options |
| COption | Option names |
| CPosePointer | |
| CRigidTransformation | |
| CPositivePolarVdWSurface | |
| CPositiveVdWSurface | |
| ►CPotential1210 | |
| CData | |
| CValues | |
| CPreciseTime | |
| CPreferencesObject | |
| CPrincipalMomentOfInertia | |
| CPrincipalMomentOfInertiaX | |
| CPrincipalMomentOfInertiaY | |
| CPrincipalMomentOfInertiaZ | |
| CProcessor | |
| CProduct | |
| CPropertyManager | |
| CProtein | |
| CProteinIteratorTraits | |
| CProteinPredicate | |
| ►CPTE_ | |
| CSymbolToElement | |
| CPubChemDownloader | Downloads PubChem entries |
| CPyColorRGBAVector | |
| CPyCompositeList | |
| CPyDatasetVector | |
| CPyIndexList | |
| CPyInterpreter | |
| ►CQuadraticAngleBend | |
| CData | |
| CValues | |
| ►CQuadraticBondStretch | |
| CData | |
| CValues | |
| ►CQuadraticImproperTorsion | |
| CData | |
| CValues | |
| CQuadruple | |
| CQuaternionGene | |
| CQuaternionParameter | |
| CRadialDistributionFunction | |
| CRadiusRuleProcessor | |
| CRandomAccessIterator | |
| CRandomCoilShiftProcessor | |
| CRandomEvaluation | |
| CRandomNumberGenerator | |
| CRDFIntegrator | |
| CRDFParameter | |
| CRDFSection | |
| CReceptor | |
| CReciprocal | |
| CReconstructFragmentProcessor | |
| CReducedSurface | |
| CReferenceArea | |
| CRegularExpression | |
| ►CReissCavFreeEnergyProcessor | |
| CDefault | |
| COption | |
| CRelHydrophobicVdWSurface | |
| CRelNegativePartialCharge | |
| CRelNegativePolarVdWSurface | |
| CRelNegativeVdWSurface | |
| CRelNumberOfRotatableBonds | |
| CRelNumberOfRotatableSingleBonds | |
| CRelPolarVdWSurface | |
| CRelPositivePartialCharge | |
| CRelPositivePolarVdWSurface | |
| CRelPositiveVdWSurface | |
| CRescorer | |
| ►CRescoring | |
| CRescoreQSARData | |
| CRescoring1D | |
| CRescoring3D | |
| CRescoring4D | |
| CResidue | |
| CResidueChecker | |
| CResidueIDPredicate | |
| CResidueIteratorTraits | |
| CResiduePredicate | |
| ►CResidueRotamerSet | |
| CRotamerProbabilityGreaterThan_ | |
| ►CResidueTorsions | |
| CData | |
| ►CResourceEntry | |
| CIteratorTraits_ | |
| CResourceFile | |
| ►CResult | |
| CResultData | |
| CRGroupAssembler | |
| ►CRingAnalyser | Methods for the analysis of the structure of ringsystems |
| CRing | |
| CRingFinder | |
| ►CRingPerceptionProcessor | |
| CDefault | Default options for the ring perception |
| COption | Option names |
| CPathMessage_ | |
| CTNode_ | |
| ►CRMSDMinimizer | |
| CIncompatibleCoordinateSets | |
| CTooFewCoordinates | |
| CRombergIntegrator | |
| CRotamer | |
| CRotamerLibrary | Rotamer Library Class |
| CRotateBond | |
| CRotateBonds | |
| CRotationalEntropy | |
| ►CRSComputer | |
| CProbePosition | |
| CRSEdge | |
| CRSFace | |
| CRSVertex | |
| CRuleEvaluator | |
| CRuleProcessor | |
| CSASEdge | |
| CSASFace | |
| CSASTriangulator | |
| CSASVertex | |
| CScoreGridSet | |
| CScoringBaseFunction | |
| CScoringComponent | |
| ►CScoringFunction | |
| CDefault | |
| COption | |
| CResult | |
| ►CScoringOptimizer | |
| CResult | |
| CSCWRLRotamerFile | Reads Dunbrack/SCWRL rotamer library files |
| CSDFile | |
| ►CSDGenerator | |
| CAtomComparator | |
| CDefault | Default values for options |
| COption | Option names |
| CSecondaryStructure | |
| CSecondaryStructureIteratorTraits | |
| CSecondaryStructurePredicate | |
| CSecondaryStructureProcessor | Secondary structure extraction from 3D structure |
| CSelectable | |
| CSelectedPredicate | |
| CSelector | |
| CSESComputer | |
| CSESEdge | |
| CSESFace | |
| ►CSESSingularityCleaner | |
| CProbeIntersection | |
| CSESTriangulator | |
| CSESVertex | |
| ►CShiftedLVMMMinimizer | |
| CDefault | |
| COption | |
| CShiftModel | |
| CShiftModel1D | |
| CShiftModel2D | |
| CShiftModule | |
| CSideChainOptimizer | |
| ►CSideChainPlacementProcessor | |
| CDefault | Default values for options |
| CMethod | |
| COption | Option names |
| CSimpleBase | |
| CSimpleDownloader | |
| CSimpleExperiment1D | |
| CSingleBondsPredicate | |
| CSizeOfSSSR | |
| ►CSLICKEnergy | |
| CDefault | |
| COption | |
| ►CSLICKScore | |
| CDefault | |
| COption | |
| ►CSmartsMatcher | |
| CRecStruct_ | Wrapper class which is used as an interface in the matching code to the pool |
| CRecStructCore_ | Core structure of the recursive matching algorithm for the object pool |
| CRecStructPool_ | Class which does the pool operations of the RecStructCore_ pool |
| ►CSmartsParser | |
| ►CSPAtom | Smarts Parser Atom class |
| CProperty | Property struct of smarts parser atom |
| CPropertyValue | Possible types of the properties |
| CSPBond | Bond representation of the smarts parser |
| CSPEdge | Edge representation of the smarts parser graph |
| CSPNode | Representation of a node in the smarts parser graph |
| CState | Parser state (used by the parser itself) |
| CSMARTSPredicate | |
| ►CSmilesParser | |
| CSPAtom | |
| CSPBond | |
| CState | |
| CSnapShot | |
| ►CSnapShotManager | |
| CDefault | Local class for handling default values for the options |
| COption | Local class for handling options |
| CSolvation | |
| CSolventAccessibleSurface | |
| CSolventAtomDescriptor | |
| CSolventDescriptor | |
| CSolventExcludedSurface | |
| CSolventParameter | |
| CSolventPredicate | |
| CSortedPosition2 | |
| CSortedPosition3 | |
| CSp2HybridizedPredicate | |
| CSp3HybridizedPredicate | |
| CSpaceGroupParameters | |
| CSpectrum | |
| CSpHybridizedPredicate | |
| CSquareFunction | |
| ►CStaticLigandFragment | |
| CConnection | |
| CSteepestDescentMinimizer | |
| ►CStrangLBFGSMinimizer | |
| CDefault | |
| COption | |
| CStretchComponent | |
| CString | |
| CStringHashMap | |
| CStructureMapper | |
| CStructurePreparer | |
| ►CSubstring | |
| CInvalidSubstring | |
| CUnboundSubstring | |
| CSubtraction | |
| CSurfaceBase | |
| CSurfaceProcessor | |
| CSystem | |
| CTAngle | |
| CTBox3 | |
| CTCircle3 | |
| CTContour | |
| CTContourLine | |
| ►CTContourSurface | |
| CCube | |
| CTCPIOStream | |
| CTCPServer | |
| CTCPServerThread | |
| CTemplates | |
| CTextPersistenceManager | |
| CTFFT1D | |
| CTFFT2D | |
| CTFFT3D | |
| CTimer | |
| CTimeStamp | |
| CTLine3 | |
| CTMatrix4x4 | Default Type |
| CTMutex | |
| CTMutex< QMutex > | |
| CTMutexLocker | |
| CTotalNegativePartialCharge | |
| CTotalPositivePartialCharge | |
| CTPlane3 | |
| CTQuaternion | |
| CTrajectoryFile | |
| CTrajectoryFileFactory | |
| CTransformationManager | |
| CTransformationProcessor | |
| CTranslationProcessor | |
| CTReadLocker | |
| CTReadWriteLock | |
| CTReadWriteLock< QReadWriteLock > | |
| ►CTreeWidth | |
| CBagContentWriter | |
| CComponentFilter_ | |
| ►CTreeWidthImplementation | |
| CFillInHeuristic | |
| CGeneralLowerBoundAlgorithm | Generic lower bound algorithm on graphs |
| CGreedyX | |
| CMinorMinWidthCriterion | |
| CMinorMinWidthReducer | |
| ►CQuickBB | |
| CQuickBBState | |
| CTreeDecompositionBuilder | |
| ►CTRegularData1D | |
| CBlockValueType | The block data type for reading and writing binary data |
| ►CTRegularData2D | |
| CBlockValueType | The block data type for reading and writing binary data |
| CIndexType | The index type used to refer to a specific element in the grid (x-, and y-index) |
| ►CTRegularData3D | |
| CBlockValueType | The block data type for reading and writing binary data |
| CIndexType | The index type used to refer to a specific element in the grid (x-, y-, and z-index) |
| CTriangle | |
| CTriangleEdge | |
| CTrianglePoint | |
| CTriangulatedSAS | |
| CTriangulatedSES | |
| ►CTriangulatedSphere | |
| CFace | |
| CTriangulatedSurface | |
| CTriple | |
| CTripleBondsPredicate | |
| ►CTRRFile | |
| CTRRHeader | |
| CTruePredicate | |
| CTSimpleBox3 | |
| CTSimpleMolecularGraph | |
| CTSphere3 | |
| ►CTSurface | |
| CTriangle | |
| CTVector2 | |
| CTVector3 | |
| CTVector4 | |
| CTWriteLocker | |
| CTypenameRuleProcessor | |
| CTypeRuleProcessor | |
| CUCK | |
| ►CUhligCavFreeEnergyProcessor | |
| CDefault | |
| COption | |
| CUnaryFunctor | |
| CUnaryPredicate | |
| CUnaryProcessor | |
| CVanDerWaals | |
| ►CVanDerWaalsSlick | |
| CDefault | |
| COption | |
| CVdWSurface | |
| CVdWVolume | |
| CVertexAdjacency | |
| CVertexAdjacencyEquality | |
| CVisitor | |
| CXDRPersistenceManager | |
| CXYZFile | |
| CZagrebIndex | |
| ►Nboost | |
| Chash< BALL::Quadruple< T1, T2, T3, T4 > > | |
| Chash< BALL::SortedPosition2 > | |
| Chash< BALL::SortedPosition3 > | |
| Chash< BALL::String > | |
| Chash< BALL::Triple< T1, T2, T3 > > | |
| ►Chash< RTpieCpp::InstanceHandle > | |
| Cconv | |
| ►Chash< RTpieCpp::MeshHandle > | |
| Cconv | |
| CMolecularGraphBase | |
| CMutexLockerType | |
| CQAbstractListModel | |
| CQAbstractTableModel | |
| CQCanvasRectangle | |
| CQCanvasView | |
| CQDialog | |
| CQDockWidget | |
| CQEvent | |
| CQGLWidget | |
| CQItemDelegate | |
| CQLineEdit | |
| CQMainWindow | |
| CQMouseEvent | |
| CQObject | |
| CQPaintDevice | |
| CQPlainTextEdit | |
| CQPushButton | |
| CQSyntaxHighlighter | |
| CQTableView | |
| CQTableWidget | |
| CQTextBrowser | |
| CQThread | |
| CQTreeWidget | |
| CQTreeWidgetItem | |
| CQValidator | |
| CQWebView | |
| CQWidget | |
| CReadLockerType | |
| CWriteLockerType | |
1.8.7
