BALL::VIEW::PeptideDialog Class Reference

#include <BALL/VIEW/DIALOGS/peptideDialog.h>

Inheritance diagram for BALL::VIEW::PeptideDialog:

Public Slots
void	ala_pressed ()
void	arg_pressed ()
void	asn_pressed ()
void	asp_pressed ()
void	cys_pressed ()
void	gln_pressed ()
void	glu_pressed ()
void	gly_pressed ()
void	his_pressed ()
void	ile_pressed ()
void	leu_pressed ()
void	lys_pressed ()
void	met_pressed ()
void	phe_pressed ()
void	pro_pressed ()
void	ser_pressed ()
void	thr_pressed ()
void	trp_pressed ()
void	tyr_pressed ()
void	val_pressed ()
void	back_pressed ()
void	close_pressed ()
void	angle_changed ()
void	insert_seq ()
void	prolineActivated ()
void	prolineDeactivated ()
virtual bool	eventFilter (QObject *object, QEvent *event)

Public Member Functions
	PeptideDialog (QWidget *parent=0, const char *name="PeptideDialog", Qt::WFlags fl=0)
	Constructor. More...
	~PeptideDialog ()
	Destructor. More...
String	getSequence ()
Protein *	getProtein ()
Public Member Functions inherited from BALL::Peptides::PeptideBuilder
	PeptideBuilder ()
	PeptideBuilder (const std::vector< AminoAcidDescriptor > &sequence)
	PeptideBuilder (const String &sequence, const Angle &phi=Angle(-47., false), const Angle &psi=Angle(-58., false), const Angle &omega=Angle(180., false))
	PeptideBuilder (const PeptideBuilder &pc)
virtual	~PeptideBuilder ()
void	addAminoAcid (const String &type, const Angle &phi=Angle(-47., false), const Angle &psi=Angle(-58., false), const Angle &omega=Angle(180., false))
void	addAminoAcid (const AminoAcidDescriptor &aad)
void	setChainName (const String &name)
const String &	getChainName () const
void	setProteinName (const String &name)
const String &	getProteinName () const
Protein *	construct ()
void	setFragmentDB (const FragmentDB *db)
const FragmentDB *	getFragmentDB () const

Protected Member Functions
void	insert_ (char a)
void	truncString_ (String &data)
bool	isAminoAcid_ (char a) const
Protected Member Functions inherited from BALL::Peptides::PeptideBuilder
Residue *	createResidue_ (const String &type, const int id)
void	insert_ (Residue &resnew, Residue &resold)
void	transform_ (const Angle &phi, const Angle &psi, Residue &resold, Residue &resnew)
void	peptide_ (Residue &resold, Residue &resnew)
void	setOmega_ (Residue &resold, Residue &residue, const Angle &omega)
PDBAtom *	getAtomByName_ (Residue &res, const String &name)

Protected Attributes
Protein *	protein_
Protected Attributes inherited from BALL::Peptides::PeptideBuilder
std::vector< AminoAcidDescriptor >	sequence_
String	chainname_
String	proteinname_
bool	is_proline_
	The proline flag. More...
FragmentDB *	fragment_db_

Static Protected Attributes
static String	all_amino_acids_

Detailed Description

Dialog for building peptides

Definition at line 25 of file peptideDialog.h.

Constructor & Destructor Documentation

BALL::VIEW::PeptideDialog::PeptideDialog	(	QWidget *	parent = 0,
		const char *	name = "PeptideDialog",
		Qt::WFlags	fl = 0
	)

Constructor.

BALL::VIEW::PeptideDialog::~PeptideDialog ( )

inline

Destructor.

Definition at line 38 of file peptideDialog.h.

Member Function Documentation

void BALL::VIEW::PeptideDialog::ala_pressed ( )

inlineslot

Definition at line 49 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::angle_changed ( )

slot

void BALL::VIEW::PeptideDialog::arg_pressed ( )

inlineslot

Definition at line 52 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::asn_pressed ( )

inlineslot

Definition at line 55 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::asp_pressed ( )

inlineslot

Definition at line 58 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::back_pressed ( )

slot

void BALL::VIEW::PeptideDialog::close_pressed ( )

slot

void BALL::VIEW::PeptideDialog::cys_pressed ( )

inlineslot

Definition at line 61 of file peptideDialog.h.

virtual bool BALL::VIEW::PeptideDialog::eventFilter ( QObject *  object, QEvent *  event  )

virtualslot

Protein* BALL::VIEW::PeptideDialog::getProtein ( )

inline

Definition at line 44 of file peptideDialog.h.

String BALL::VIEW::PeptideDialog::getSequence

(

)

void BALL::VIEW::PeptideDialog::gln_pressed ( )

inlineslot

Definition at line 64 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::glu_pressed ( )

inlineslot

Definition at line 67 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::gly_pressed ( )

inlineslot

Definition at line 70 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::his_pressed ( )

inlineslot

Definition at line 73 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::ile_pressed ( )

inlineslot

Definition at line 76 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::insert_ ( char  a )

protected

void BALL::VIEW::PeptideDialog::insert_seq ( )

slot

bool BALL::VIEW::PeptideDialog::isAminoAcid_ ( char  a ) const

protected

void BALL::VIEW::PeptideDialog::leu_pressed ( )

inlineslot

Definition at line 79 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::lys_pressed ( )

inlineslot

Definition at line 82 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::met_pressed ( )

inlineslot

Definition at line 85 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::phe_pressed ( )

inlineslot

Definition at line 88 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::pro_pressed ( )

inlineslot

Definition at line 91 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::prolineActivated ( )

slot

void BALL::VIEW::PeptideDialog::prolineDeactivated ( )

slot

void BALL::VIEW::PeptideDialog::ser_pressed ( )

inlineslot

Definition at line 94 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::thr_pressed ( )

inlineslot

Definition at line 97 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::trp_pressed ( )

inlineslot

Definition at line 100 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::truncString_ ( String &  data )

protected

void BALL::VIEW::PeptideDialog::tyr_pressed ( )

inlineslot

Definition at line 103 of file peptideDialog.h.

void BALL::VIEW::PeptideDialog::val_pressed ( )

inlineslot

Definition at line 106 of file peptideDialog.h.

Member Data Documentation

String BALL::VIEW::PeptideDialog::all_amino_acids_

staticprotected

Definition at line 138 of file peptideDialog.h.

Protein* BALL::VIEW::PeptideDialog::protein_

protected

Definition at line 137 of file peptideDialog.h.