BALL  1.4.79
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BALL::SimpleBase Class Reference

#include <BALL/QSAR/simpleBase.h>

Inheritance diagram for BALL::SimpleBase:
BALL::Descriptor BALL::UnaryProcessor< AtomContainer > BALL::UnaryFunctor< AtomContainer, Processor::Result > BALL::AtomicPolarizabilities BALL::AtomInformationContent BALL::BondPolarizabilities BALL::FormalCharge BALL::MeanAtomInformationContent BALL::MolecularWeight BALL::NumberOfAromaticAtoms BALL::NumberOfAromaticBonds BALL::NumberOfAtoms BALL::NumberOfBonds BALL::NumberOfBoron BALL::NumberOfBromine BALL::NumberOfCarbon BALL::NumberOfChlorine BALL::NumberOfDoubleBonds BALL::NumberOfFlourine BALL::NumberOfHeavyAtoms BALL::NumberOfHeavyBonds BALL::NumberOfHydrogen BALL::NumberOfHydrogenBondAcceptors BALL::NumberOfHydrogenBondDonors BALL::NumberOfHydrophobicAtoms BALL::NumberOfIodine BALL::NumberOfNitrogen BALL::NumberOfOxygen BALL::NumberOfPhosphorus BALL::NumberOfRotatableBonds BALL::NumberOfRotatableSingleBonds BALL::NumberOfSingleBonds BALL::NumberOfSulfur BALL::NumberOfTripleBonds BALL::PrincipalMomentOfInertia BALL::PrincipalMomentOfInertiaX BALL::PrincipalMomentOfInertiaY BALL::PrincipalMomentOfInertiaZ BALL::RelNumberOfRotatableBonds BALL::RelNumberOfRotatableSingleBonds BALL::SizeOfSSSR BALL::VertexAdjacency BALL::VertexAdjacencyEquality

Public Member Functions

Constructors and Destructors
 SimpleBase ()
 
 SimpleBase (const SimpleBase &sb)
 
 SimpleBase (const String &name)
 
 SimpleBase (const String &name, const String &unit)
 
virtual ~SimpleBase ()
 
Assignment
virtual SimpleBaseoperator= (const SimpleBase &sb)
 
- Public Member Functions inherited from BALL::Descriptor
 Descriptor ()
 
 Descriptor (const Descriptor &descriptor)
 
 Descriptor (const String &name)
 
 Descriptor (const String &name, const String &unit)
 
virtual ~Descriptor ()
 
Descriptoroperator= (const Descriptor &descriptor)
 
Processor::Result operator() (AtomContainer &ac)
 
const StringgetName () const
 
void setName (const String &name)
 
void setUnit (const String &name)
 
const StringgetUnit () const
 
virtual double compute (AtomContainer &ac)
 
- Public Member Functions inherited from BALL::UnaryProcessor< AtomContainer >
 UnaryProcessor ()
 
 UnaryProcessor (const UnaryProcessor &)
 
virtual ~UnaryProcessor ()
 
virtual bool start ()
 
virtual bool finish ()
 

Accessors

void computeAllDescriptors (AtomContainer &ac)
 
void setDataFolder (const char *folder)
 
void calculate_ (AtomContainer &ac)
 

Predicates

bool isValid_ (AtomContainer &ac)
 

Additional Inherited Members

- Public Types inherited from BALL::UnaryFunctor< AtomContainer, Processor::Result >
typedef Processor::Result result_type
 
typedef AtomContainer argument_type
 
typedef AtomContainerargument_reference
 
typedef const AtomContainerconst_argument_reference
 
typedef AtomContainerargument_pointer
 
typedef const AtomContainerconst_argument_pointer
 
Predicates

Detailed Description

QSAR molecular simple descriptors base class, this class implements some methods to calculate simple descriptors. \

Definition at line 20 of file simpleBase.h.

Constructor & Destructor Documentation

BALL::SimpleBase::SimpleBase ( )

Default constructor

BALL::SimpleBase::SimpleBase ( const SimpleBase sb)

Copy constructor

BALL::SimpleBase::SimpleBase ( const String name)

Named constructor

BALL::SimpleBase::SimpleBase ( const String name,
const String unit 
)

Named unit constructor

virtual BALL::SimpleBase::~SimpleBase ( )
virtual

Destructor

Member Function Documentation

void BALL::SimpleBase::calculate_ ( AtomContainer ac)
protectedvirtual

Reimplemented from BALL::Descriptor.

void BALL::SimpleBase::computeAllDescriptors ( AtomContainer ac)
bool BALL::SimpleBase::isValid_ ( AtomContainer ac)
protectedvirtual

Reimplemented from BALL::Descriptor.

virtual SimpleBase& BALL::SimpleBase::operator= ( const SimpleBase sb)
virtual

Assignment operator

void BALL::SimpleBase::setDataFolder ( const char *  folder)

allows to set the data-folder without using BALL_DATA_PATH enviroment variable, which is useful for standalone applications