BALL::SmilesParser Class Reference

#include <BALL/STRUCTURE/smilesParser.h>

Classes
class	SPAtom
class	SPBond
struct	State

Public Types
enum	ZEIsomerType { NONE, Z, E }
enum	ChiralClass {   NONCHIRAL, TH, AL, SP,   TB, OH }
enum	{ MAX_CONNECTIONS = 100 }
typedef std::pair< ChiralClass, Position >	ChiralDef
typedef std::list< Position >	ConnectionList

Public Member Functions
Constructors and Destructors
	SmilesParser ()
	SmilesParser (const SmilesParser &parser)
virtual	~SmilesParser ()
Parsing
void	parse (const String &s) throw (Exception::ParseError)
const System &	getSystem () const
Methods required by the underlying YACC parser
SPAtom *	createAtom (const String &symbol, bool in_bracket=false)
void	createBonds (SPAtom *atom, const ConnectionList *list)
void	createBond (SPAtom *left, SPAtom *right, Index order)
void	addMissingHydrogens ()

Static Public Attributes
static State	state

Protected Attributes
System	system_
std::vector< SPAtom * >	connections_
std::vector< SPAtom * >	all_atoms_

Static Protected Attributes
static SmilesParser *	current_parser_

Detailed Description

Definition at line 36 of file smilesParser.h.

Member Typedef Documentation

typedef std::pair<ChiralClass, Position> BALL::SmilesParser::ChiralDef

Definition at line 61 of file smilesParser.h.

typedef std::list<Position> BALL::SmilesParser::ConnectionList

Definition at line 112 of file smilesParser.h.

Member Enumeration Documentation

anonymous enum

Enumerator
MAX_CONNECTIONS

Definition at line 56 of file smilesParser.h.

enum BALL::SmilesParser::ChiralClass

Enumerator
NONCHIRAL
TH
AL
SP
TB
OH

Definition at line 46 of file smilesParser.h.

enum BALL::SmilesParser::ZEIsomerType

Enumerator
NONE
Z
E

Definition at line 39 of file smilesParser.h.

Constructor & Destructor Documentation

BALL::SmilesParser::SmilesParser

(

)

BALL::SmilesParser::SmilesParser

(

const SmilesParser &

parser

)

virtual BALL::SmilesParser::~SmilesParser ( )

virtual

Member Function Documentation

void BALL::SmilesParser::addMissingHydrogens

(

)

SPAtom* BALL::SmilesParser::createAtom	(	const String &	symbol,
		bool	in_bracket = false
	)

void BALL::SmilesParser::createBond	(	SPAtom *	left,
		SPAtom *	right,
		Index	order
	)

void BALL::SmilesParser::createBonds	(	SPAtom *	atom,
		const ConnectionList *	list
	)

const System& BALL::SmilesParser::getSystem

(

)

const

Return the parsed system

void BALL::SmilesParser::parse	(	const String &	s	)
throw	(	Exception::ParseError
	)

Parse a SMILES string.

Member Data Documentation

std::vector<SPAtom*> BALL::SmilesParser::all_atoms_

protected

Definition at line 170 of file smilesParser.h.

std::vector<SPAtom*> BALL::SmilesParser::connections_

protected

Definition at line 169 of file smilesParser.h.

SmilesParser* BALL::SmilesParser::current_parser_

staticprotected

Definition at line 171 of file smilesParser.h.

State BALL::SmilesParser::state

static

Definition at line 165 of file smilesParser.h.

System BALL::SmilesParser::system_

protected

Definition at line 168 of file smilesParser.h.