| atom_pairwise_ | BALL::ScoringComponent | protected |
| base_function_ | BALL::ScoringComponent | protected |
| clear() | BALL::PLP | virtual |
| coefficient_ | BALL::ScoringComponent | protected |
| disable() | BALL::ScoringComponent | |
| enable() | BALL::ScoringComponent | |
| energy_ | BALL::ForceFieldComponent | protected |
| es_energy_ | BALL::PLP | protected |
| force_field_ | BALL::ForceFieldComponent | protected |
| ForceFieldComponent() | BALL::ForceFieldComponent | |
| ForceFieldComponent(ForceField &force_field) | BALL::ForceFieldComponent | |
| ForceFieldComponent(const ForceFieldComponent &force_field_component) | BALL::ForceFieldComponent | |
| getAtomType(const Atom *atom) | BALL::PLP | static |
| getCoefficient() | BALL::ScoringComponent | |
| getEnergy() const | BALL::ForceFieldComponent | virtual |
| getESEnergy() const | BALL::PLP | |
| getForceField() const | BALL::ForceFieldComponent | |
| getName() const | BALL::ForceFieldComponent | |
| getNormalizationParameters(double &stddev, double &mean) | BALL::ScoringComponent | |
| getRawScore() const | BALL::ScoringComponent | |
| getScaledScore() const | BALL::ScoringComponent | |
| getScoringFunction() const | BALL::ScoringComponent | |
| getTypeName() | BALL::ScoringComponent | |
| getVDWEnergy() const | BALL::PLP | |
| gridable_ | BALL::ScoringComponent | protected |
| isAtomPairwise() | BALL::ScoringComponent | |
| isEnabled() const | BALL::ForceFieldComponent | inline |
| BALL::ScoringComponent::isEnabled() | BALL::ScoringComponent | |
| isGridable() | BALL::ScoringComponent | |
| isLigandIntraMolecular() | BALL::ScoringComponent | |
| isNSp3(const Atom *at) | BALL::PLP | protectedstatic |
| isSp3(const Atom *at) | BALL::PLP | protectedstatic |
| ligand_intra_molecular_ | BALL::ScoringComponent | protected |
| mean_ | BALL::ScoringComponent | protected |
| operator=(const PLP &anb) | BALL::PLP | |
| operator==(const PLP &anb) | BALL::PLP | |
| PLP() | BALL::PLP | |
| PLP(ForceField &force_field) | BALL::PLP | |
| PLP(const PLP &MMFF94_non_bonded) | BALL::PLP | |
| scaleScore(double score) const | BALL::ScoringComponent | protected |
| score_ | BALL::ScoringComponent | protected |
| scoring_function_ | BALL::ScoringComponent | protected |
| ScoringComponent() | BALL::ScoringComponent | |
| ScoringComponent(const ScoringComponent &sc) | BALL::ScoringComponent | |
| ScoringComponent(ScoringFunction &sf) | BALL::ScoringComponent | |
| selectBaseFunction(String function) | BALL::ScoringComponent | |
| setCoefficient(const double &coeff) | BALL::ScoringComponent | |
| setEnabled(bool state) | BALL::ForceFieldComponent | inline |
| setForceField(ForceField &force_field) | BALL::ForceFieldComponent | |
| setLigandIntraMolecular(bool b) | BALL::ScoringComponent | virtual |
| setName(const String &name) | BALL::ForceFieldComponent | |
| setNormalizationParameters(double stddev, double mean) | BALL::ScoringComponent | |
| setRotatableBonds(std::vector< Bond * > &bonds) | BALL::PLP | |
| setScoringFunction(ScoringFunction &sf) | BALL::ScoringComponent | |
| setup(Options &options) | BALL::PLP | |
| BALL::ForceFieldComponent::setup() | BALL::ForceFieldComponent | virtual |
| setupLigand() | BALL::ScoringComponent | virtual |
| stddev_ | BALL::ScoringComponent | protected |
| type_name_ | BALL::ScoringComponent | protected |
| update(const std::vector< std::pair< Atom *, Atom * > > &atom_vector) | BALL::PLP | virtual |
| update() | BALL::PLP | virtual |
| updateEnergy() | BALL::PLP | virtual |
| updateForces() | BALL::PLP | virtual |
| updateScore() | BALL::ForceFieldComponent | virtual |
| vdw_energy_ | BALL::PLP | protected |
| ~ForceFieldComponent() | BALL::ForceFieldComponent | virtual |
| ~PLP() | BALL::PLP | virtual |
| ~ScoringComponent() | BALL::ScoringComponent | virtual |
1.8.7