| abop | BALL::PartialBondOrderAssignment | |
| bond_orders | BALL::PartialBondOrderAssignment | |
| clear() | BALL::PartialBondOrderAssignment | |
| coarsePenalty(float atom_type_penalty, float bond_length_penalty) const | BALL::PartialBondOrderAssignment | |
| coarsePenalty() const | BALL::PartialBondOrderAssignment | |
| convertToFullAssignment() | BALL::PartialBondOrderAssignment | |
| estimateAtomTypePenalty_(Atom *atom, Index atom_index, int fixed_valence, int fixed_virtual_order, int num_free_bonds, HEURISTIC_INDEX heuristic_index) | BALL::PartialBondOrderAssignment | |
| estimateBondLengthPenalty_(Index atom_index, const vector< Bond * > &free_bonds, int fixed_virtual_order, int fixed_valence, int num_free_bonds) | BALL::PartialBondOrderAssignment | |
| estimated_atom_type_penalty | BALL::PartialBondOrderAssignment | |
| estimated_bond_length_penalty | BALL::PartialBondOrderAssignment | |
| estimatePenalty_(bool include_heuristic_term=true, HEURISTIC_INDEX heuristic_index=SIMPLE) | BALL::PartialBondOrderAssignment | |
| finePenalty() const | BALL::PartialBondOrderAssignment | inline |
| getAtomTypePenalty(bool include_heuristic_term=true, HEURISTIC_INDEX heuristic_index=SIMPLE) | BALL::PartialBondOrderAssignment | |
| HEURISTIC_INDEX enum name | BALL::PartialBondOrderAssignment | |
| last_bond | BALL::PartialBondOrderAssignment | |
| MEDIUM enum value | BALL::PartialBondOrderAssignment | |
| operator<(const PartialBondOrderAssignment &b) const | BALL::PartialBondOrderAssignment | |
| PartialBondOrderAssignment(AssignBondOrderProcessor *parent) | BALL::PartialBondOrderAssignment | |
| SIMPLE enum value | BALL::PartialBondOrderAssignment | |
| TIGHT enum value | BALL::PartialBondOrderAssignment | |
| ~PartialBondOrderAssignment() | BALL::PartialBondOrderAssignment | |