| A_ | BALL::StructureMapper | protected |
| argument_pointer typedef | BALL::UnaryFunctor< Atom, Processor::Result > | |
| argument_reference typedef | BALL::UnaryFunctor< Atom, Processor::Result > | |
| argument_type typedef | BALL::UnaryFunctor< Atom, Processor::Result > | |
| B_ | BALL::StructureMapper | protected |
| bijection_ | BALL::StructureMapper | protected |
| calculateDefaultBijection(bool limit_to_selection=false) | BALL::StructureMapper | |
| calculateFragmentBijection(const vector< Fragment * > &A, const vector< Fragment * > &B) | BALL::StructureMapper | |
| calculateRMSD() | BALL::StructureMapper | |
| calculateRMSD(const AtomBijection &new_bijection) | BALL::StructureMapper | |
| calculateTransformation() | BALL::StructureMapper | |
| const_argument_pointer typedef | BALL::UnaryFunctor< Atom, Processor::Result > | |
| const_argument_reference typedef | BALL::UnaryFunctor< Atom, Processor::Result > | |
| countFragments_(const AtomContainer &ac) const | BALL::StructureMapper | protected |
| finish() | BALL::UnaryProcessor< Atom > | inlinevirtual |
| getBijection() const | BALL::StructureMapper | inline |
| getTransformation() const | BALL::TransformationProcessor | |
| mapFragments(const vector< Fragment * > &A, const vector< Fragment * > &B, Matrix4x4 *transformation, double upper_bound=8.0, double lower_bound=2.5) | BALL::StructureMapper | |
| mapProteins(Protein &P1, Protein &P2, std::map< String, Size > &type_map, Size &no_matched_ca, double &rmsd, double upper_bound=8.0, double lower_bound=4.0, double tolerance=0.6) | BALL::StructureMapper | |
| mapResiduesByBackbone(const list< Residue * > &l1, const list< Residue * > &l2) | BALL::StructureMapper | |
| matchBackboneAtoms(const Residue &r1, const Residue &r2) | BALL::StructureMapper | static |
| matchPoints(const Vector3 &w1, const Vector3 &w2, const Vector3 &w3, const Vector3 &v1, const Vector3 &v2, const Vector3 &v3) | BALL::StructureMapper | static |
| operator()(Atom &atom) | BALL::TransformationProcessor | virtual |
| result_type typedef | BALL::UnaryFunctor< Atom, Processor::Result > | |
| rmsd_ | BALL::StructureMapper | protected |
| searchPattern(vector< Fragment * > &pattern, AtomContainer &composite, double max_rmsd=4.0, double max_center_tolerance=2.0, double upper_bound=8.0, double lower_bound=4.0) | BALL::StructureMapper | |
| set(AtomContainer &A, AtomContainer &B) | BALL::StructureMapper | |
| setTransformation(const Matrix4x4 &transformation) | BALL::TransformationProcessor | |
| start() | BALL::UnaryProcessor< Atom > | inlinevirtual |
| StructureMapper() | BALL::StructureMapper | |
| StructureMapper(AtomContainer &A, AtomContainer &B) | BALL::StructureMapper | |
| transformation_ | BALL::TransformationProcessor | protected |
| TransformationProcessor() | BALL::TransformationProcessor | |
| TransformationProcessor(const Matrix4x4 &transformation) | BALL::TransformationProcessor | |
| UnaryProcessor() | BALL::UnaryProcessor< Atom > | inline |
| UnaryProcessor(const UnaryProcessor &) | BALL::UnaryProcessor< Atom > | inline |
| ~StructureMapper() | BALL::StructureMapper | virtual |
| ~UnaryProcessor() | BALL::UnaryProcessor< Atom > | inlinevirtual |
1.8.7