BALL  1.4.79
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BALL::SDFile Member List

This is the complete list of members for BALL::SDFile, including all inherited members.

atom_format_BALL::MOLFileprotectedstatic
bond_format_BALL::MOLFileprotectedstatic
clear()BALL::LineBasedFilevirtual
close()BALL::GenericMolFilevirtual
col_buffer_BALL::LineBasedFileprotected
compress_output_BALL::GenericMolFileprotected
copy(String source_name, String destination_name, Size buffer_size=4096)BALL::Filestatic
copyTo(const String &destination_name, Size buffer_size=4096)BALL::File
counts_format_BALL::MOLFileprotectedstatic
created_temp_filenames_BALL::Fileprotectedstatic
createTemporaryFilename(String &temporary, const String &suffix=".TMP")BALL::Filestatic
defineInputAsTemporary(bool b=true)BALL::GenericMolFile
disableAtoms()BALL::SDFile
disableTransformation(Transformation transformation)BALL::Filestatic
enableAtoms()BALL::SDFile
enableOutputCompression(String zipped_filename)BALL::GenericMolFile
enableTransformation(Transformation transformation)BALL::Filestatic
enableTrimWhitespaces(bool state)BALL::LineBasedFile
File()BALL::File
File(const String &name, OpenMode open_mode=std::ios::in)BALL::File
GenericMolFile()BALL::GenericMolFile
GenericMolFile(const String &filename, File::OpenMode open_mode=std::ios::in)BALL::GenericMolFile
getField(Index pos=0, const String &quotes="", const String &delimiters=String::CHARACTER_CLASS__WHITESPACE) const BALL::LineBasedFile
getFileStream()BALL::File
getLine() const BALL::LineBasedFile
getLine()BALL::LineBasedFile
getLineNumber() const BALL::LineBasedFile
getName() const BALL::File
getOpenMode() const BALL::File
getOriginalName() const BALL::File
getSize()BALL::File
getSize(String name)BALL::Filestatic
getTransformationManager()BALL::File
getTransformationManager() const BALL::File
getType(String name, bool trace_link)BALL::Filestatic
getType(bool trace_link) const BALL::File
gmf_is_closed_BALL::GenericMolFileprotected
gotoLine(Position line_number)BALL::LineBasedFile
has(const String &text) const BALL::LineBasedFile
initRead_()BALL::GenericMolFileprotectedvirtual
initWrite_()BALL::GenericMolFileprotectedvirtual
input_is_temporary_BALL::GenericMolFileprotected
is_open_BALL::Fileprotected
is_temporary_BALL::Fileprotected
isAccessible(String name)BALL::Filestatic
isAccessible() const BALL::File
isCanonized() const BALL::File
isClosed() const BALL::File
isCompressedFile()BALL::GenericMolFile
isExecutable(String name)BALL::Filestatic
isExecutable() const BALL::File
isOpen() const BALL::File
isReadable(String name)BALL::Filestatic
isReadable() const BALL::File
isTransformationEnabled(Transformation transformation)BALL::Filestatic
isValid() const BALL::File
isWritable(String name)BALL::Filestatic
isWritable() const BALL::File
line_BALL::LineBasedFileprotected
line_number_BALL::LineBasedFileprotected
LineBasedFile()BALL::LineBasedFile
LineBasedFile(const String &filename, File::OpenMode open_mode=std::ios::in, bool trim_whitespaces=false)BALL::LineBasedFile
MODE_APPBALL::Filestatic
MODE_ATEBALL::Filestatic
MODE_BINARYBALL::Filestatic
MODE_INBALL::Filestatic
MODE_OUTBALL::Filestatic
MODE_TRUNCBALL::Filestatic
MOLFile()BALL::MOLFile
MOLFile(const String &filename, File::OpenMode open_mode=std::ios::in)BALL::MOLFile
move(const String &source_name, const String &destination_name)BALL::Filestatic
moveTo(const String &destination_name)BALL::File
name_BALL::Fileprotected
open(const String &name, File::OpenMode open_mode=std::ios::in)BALL::File
open_mode_BALL::Fileprotected
OpenMode typedefBALL::File
operator!=(const LineBasedFile &f)BALL::LineBasedFile
BALL::File::operator!=(const File &file) const BALL::File
operator<<(const System &system)BALL::GenericMolFilevirtual
operator<<(const Molecule &molecule)BALL::GenericMolFilevirtual
operator=(const SDFile &file)BALL::SDFile
BALL::MOLFile::operator=(const MOLFile &file)BALL::MOLFile
BALL::GenericMolFile::operator=(const GenericMolFile &rhs)BALL::GenericMolFile
BALL::LineBasedFile::operator=(const LineBasedFile &file)BALL::LineBasedFile
operator==(const LineBasedFile &f)BALL::LineBasedFile
BALL::File::operator==(const File &file) const BALL::File
operator>>(System &system)BALL::GenericMolFilevirtual
operator>>(Molecule &molecule)BALL::GenericMolFilevirtual
original_name_BALL::Fileprotected
parseColumnFormat(const char *format, Position index, Size length, void *arg)BALL::LineBasedFile
read(System &system)BALL::SDFilevirtual
read()BALL::SDFilevirtual
read_atoms_BALL::SDFileprotected
readAtomLine_(AtomStruct &atom)BALL::MOLFileprotected
readBondLine_(BondStruct &bond)BALL::MOLFileprotected
readCountsLine_(CountsStruct &counts)BALL::MOLFileprotected
readCTAB_(std::vector< Atom * > &atom_map)BALL::MOLFileprotected
readLine()BALL::LineBasedFile
readPropertyBlock_(Molecule &molecule)BALL::SDFileprotected
registerTransformation(const String &pattern, const String &exec)BALL::Filestatic
remove(String name)BALL::Filestatic
remove()BALL::File
rename(String old_path, String new_path)BALL::Filestatic
renameTo(const String &new_path)BALL::File
reopen()BALL::File
reopen(File::OpenMode open_mode)BALL::File
rewind()BALL::LineBasedFile
SDFile()BALL::SDFile
SDFile(const String &filename, File::OpenMode open_mode=std::ios::in)BALL::SDFile
search(const String &text, bool return_to_start=false)BALL::LineBasedFile
search(const String &text, const String &stop, bool return_to_start=false)BALL::LineBasedFile
setName(const String &name)BALL::File
skipLines(Size number=1)BALL::LineBasedFile
startsWith(const String &text) const BALL::LineBasedFile
switchString(const std::vector< String > &data) const BALL::LineBasedFile
test(const char *file, int line, bool condition, const String &msg) const BALL::LineBasedFile
Transformation enum nameBALL::File
TRANSFORMATION__EXEC enum valueBALL::File
TRANSFORMATION__FILTER enum valueBALL::File
TRANSFORMATION__URL enum valueBALL::File
TRANSFORMATION_EXEC_PREFIXBALL::Filestatic
TRANSFORMATION_FILE_PREFIXBALL::Filestatic
TRANSFORMATION_FTP_PREFIXBALL::Filestatic
TRANSFORMATION_HTTP_PREFIXBALL::Filestatic
transformation_manager_BALL::Fileprotectedstatic
transformation_methods_BALL::Fileprotectedstatic
trim_whitespaces_BALL::LineBasedFileprotected
trimWhiteSpacesEnabled() const BALL::LineBasedFile
truncate(String path, Size size=0)BALL::Filestatic
truncate(Size size=0)BALL::File
Type enum nameBALL::File
TYPE__BLOCK_SPECIAL_FILE enum valueBALL::File
TYPE__CHAR_SPECIAL_FILE enum valueBALL::File
TYPE__DIRECTORY enum valueBALL::File
TYPE__FIFO_SPECIAL_FILE enum valueBALL::File
TYPE__REGULAR_FILE enum valueBALL::File
TYPE__SOCKET enum valueBALL::File
TYPE__SYMBOLIC_LINK enum valueBALL::File
TYPE__UNKNOWN enum valueBALL::File
unregisterTransformation(const String &pattern)BALL::Filestatic
write(const System &system)BALL::SDFilevirtual
write(const Molecule &molecule)BALL::SDFilevirtual
writeAtomLine_(const AtomStruct &atom)BALL::MOLFileprotected
writeBondLine_(const BondStruct &bond)BALL::MOLFileprotected
writeCountsLine_(const CountsStruct &counts)BALL::MOLFileprotected
writePropertyBlock_(const Molecule &molecule)BALL::SDFileprotected
zipped_filename_BALL::GenericMolFileprotected
~File()BALL::Filevirtual
~GenericMolFile()BALL::GenericMolFilevirtual
~MOLFile()BALL::MOLFilevirtual
~SDFile()BALL::SDFilevirtual
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