BALL  1.4.79
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BALL::Bond Member List

This is the complete list of members for BALL::Bond, including all inherited members.

AncestorConstIterator typedefBALL::Composite
AncestorIterator typedefBALL::Composite
appendChild(Composite &composite)BALL::Composite
apply(UnaryProcessor< T > &processor)BALL::Composite
apply(ConstUnaryProcessor< T > &processor) const BALL::Composite
apply(UnaryProcessor< T > &processor)BALL::Composite
apply(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyAncestor(UnaryProcessor< T > &processor)BALL::Composite
applyAncestor(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyChild(UnaryProcessor< T > &processor)BALL::Composite
applyChild(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyDescendant(UnaryProcessor< T > &processor)BALL::Composite
applyDescendant(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyDescendantPostorder(UnaryProcessor< T > &processor)BALL::Composite
applyDescendantPostorder(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyDescendantPreorder(UnaryProcessor< T > &processor)BALL::Composite
applyDescendantPreorder(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyLevel(UnaryProcessor< T > &processor, long level)BALL::Composite
applyLevel(ConstUnaryProcessor< T > &processor, long level) const BALL::Composite
applyPostorder(UnaryProcessor< T > &processor)BALL::Composite
applyPostorder(ConstUnaryProcessor< T > &processor) const BALL::Composite
applyPreorder(UnaryProcessor< T > &processor)BALL::Composite
applyPreorder(ConstUnaryProcessor< T > &processor) const BALL::Composite
Atom classBALL::Bondfriend
AutoDeletable()BALL::AutoDeletableprotected
AutoDeletable(const AutoDeletable &auto_deletable, bool deep=false)BALL::AutoDeletableprotected
beginAncestor()BALL::Compositeinline
beginAncestor() const BALL::Compositeinline
beginChildComposite()BALL::Compositeinline
beginChildComposite() const BALL::Compositeinline
beginComposite()BALL::Compositeinline
beginComposite() const BALL::Compositeinline
beginNamedProperty()BALL::PropertyManager
Bond()BALL::Bond
Bond(const Bond &bond, bool deep=true)BALL::Bond
Bond(const String &name, Atom &first, Atom &second, Order order=BALL_BOND_DEFAULT_ORDER, Type type=BALL_BOND_DEFAULT_TYPE)BALL::Bond
bond_order_BALL::Bondprotected
bond_type_BALL::Bondprotected
BondOrder enum nameBALL::Bond
BondType enum nameBALL::Bond
BOTH enum valueBALL::Composite
ChildCompositeConstIterator typedefBALL::Composite
ChildCompositeConstReverseIterator typedefBALL::Composite
ChildCompositeIterator typedefBALL::Composite
ChildCompositeReverseIterator typedefBALL::Composite
clear()BALL::Bondvirtual
clearLastPtr()BALL::AutoDeletableinlinestatic
clearProperty(Property property)BALL::PropertyManager
clearProperty(const std::string &name)BALL::PropertyManager
clone(Composite &root) const BALL::Composite
compare(const Object &object) const BALL::Object
Composite()BALL::Composite
Composite(const Composite &composite, bool deep=true)BALL::Composite
CompositeConstIterator typedefBALL::Composite
CompositeConstReverseIterator typedefBALL::Composite
CompositeIterator typedefBALL::Composite
CompositeReverseIterator typedefBALL::Composite
containsSelection() const BALL::Composite
count(const KernelPredicateType &predicate) const BALL::Composite
countDescendants() const BALL::Composite
countNamedProperties() const BALL::PropertyManager
countProperties() const BALL::PropertyManager
createBond(Bond &bond, Atom &first, Atom &second)BALL::Bondstatic
DEFAULT_PROCESSORBALL::Compositestatic
DEFAULT_UNARY_PREDICATEBALL::Compositestatic
deleteChildrenList_(std::list< Composite * > &composites)BALL::Composite
deselect()BALL::Compositevirtual
destroy()BALL::Bondvirtual
BALL::Composite::destroy(bool virtual_destroy)BALL::Composite
dump(std::ostream &s=std::cout, Size depth=0) const BALL::Bondvirtual
BALL::PersistentObject::dump(::std::ostream &s=std::cout, Size depth=0) const BALL::Objectvirtual
BALL::Selectable::dump(::std::ostream &s=std::cout, Size depth=0) const BALL::Selectablevirtual
endAncestor()BALL::Compositeinline
endAncestor() const BALL::Compositeinline
endChildComposite()BALL::Compositeinline
endChildComposite() const BALL::Compositeinline
endComposite()BALL::Compositeinline
endComposite() const BALL::Compositeinline
endNamedProperty()BALL::PropertyManager
finalize()BALL::Bondvirtual
first_BALL::Bondprotected
BALL::get(Composite &composite, bool deep=true) const BALL::Composite
BALL::Selectable::get(Selectable &selectable, bool deep=true) const BALL::Selectable
BALL::PropertyManager::get(PropertyManager &property_manager) const BALL::PropertyManager
getAncestor(const T &)BALL::Composite
getAncestor(const T &) const BALL::Composite
getAncestor(const T &)BALL::Composite
getAncestor(const T &) const BALL::Composite
getBitVector()BALL::PropertyManager
getBitVector() const BALL::PropertyManager
getBoundAtom(const Atom &atom) const BALL::Bond
getBoundAtom(const Atom &atom)BALL::Bond
getChild(Index index)BALL::Composite
getChild(Index index) const BALL::Composite
getDegree() const BALL::Composite
getDepth() const BALL::Composite
getFirstAtom() const BALL::Bond
getFirstAtom()BALL::Bond
getFirstChild()BALL::Composite
getFirstChild() const BALL::Composite
getHandle() const BALL::Object
getHeight() const BALL::Composite
getLastChild()BALL::Composite
getLastChild() const BALL::Composite
getLength() const BALL::Bond
getLowestCommonAncestor(const Composite &composite)BALL::Composite
getLowestCommonAncestor(const Composite &composite) const BALL::Composite
getModificationTime() const BALL::Composite
getName() const BALL::Bond
getNamedProperty(Position index) const BALL::PropertyManager
getNamedProperty(Position index)BALL::PropertyManager
getNewHandle()BALL::Objectstatic
getNext(const T &)BALL::Composite
getNext(const T &dummy) const BALL::Composite
getNext(const T &)BALL::Composite
getNext(const T &dummy) const BALL::Composite
getNextHandle()BALL::Objectstatic
getOrder() const BALL::Bond
getParent()BALL::Composite
getParent() const BALL::Composite
getPartner(const Atom &atom) const BALL::Bond
getPathLength(const Composite &composite) const BALL::Composite
getPrevious(const T &)BALL::Composite
getPrevious(const T &dummy) const BALL::Composite
getPrevious(const T &)BALL::Composite
getPrevious(const T &dummy) const BALL::Composite
getProperty(const std::string &name) const BALL::PropertyManager
getRoot()BALL::Composite
getRoot() const BALL::Composite
getSecondAtom() const BALL::Bond
getSecondAtom()BALL::Bond
getSelectionTime() const BALL::Composite
getSibling(Index index)BALL::Composite
getSibling(Index index) const BALL::Composite
getType() const BALL::Bond
hasAncestor(const T &dummy) const BALL::Composite
hasAncestor(const T &dummy) const BALL::Composite
hasChild() const BALL::Composite
hasNextSibling() const BALL::Composite
hasParent() const BALL::Composite
hasPreviousSibling() const BALL::Composite
hasProperty(Property property) const BALL::PropertyManager
hasProperty(const std::string &name) const BALL::PropertyManager
hasSibling() const BALL::Composite
host(Visitor< Composite > &visitor)BALL::Composite
insertAfter(Composite &composite)BALL::Composite
insertBefore(Composite &composite)BALL::Composite
insertParent(Composite &parent, Composite &first, Composite &last, bool destroy_parent=true)BALL::Compositestatic
IS_AROMATIC enum valueBALL::Bond
isAncestorOf(const Composite &composite) const BALL::Composite
isAromatic() const BALL::Bond
isAtom() const BALL::Compositeinlinevirtual
isAutoDeletable() const BALL::AutoDeletable
isBondOf(const Atom &atom) const BALL::Bond
isBound() const BALL::Bond
isChain() const BALL::Compositeinlinevirtual
isChildOf(const Composite &composite) const BALL::Composite
isDescendantOf(const Composite &composite) const BALL::Composite
isEmpty() const BALL::Composite
isFirstChild() const BALL::Composite
isFirstChildOf(const Composite &composite) const BALL::Composite
isFragment() const BALL::Compositeinlinevirtual
isHomomorph(const Composite &composite) const BALL::Composite
isInterBond() const BALL::Bond
isInterBondOf(const AtomContainer &atom_container) const BALL::Bond
isInterior() const BALL::Composite
isIntraBond() const BALL::Bond
isIntraBondOf(const AtomContainer &atom_container) const BALL::Bond
isLastChild() const BALL::Composite
isLastChildOf(const Composite &composite) const BALL::Composite
isMolecule() const BALL::Compositeinlinevirtual
isNextSiblingOf(const Composite &composite) const BALL::Composite
isParentOf(const Composite &composite) const BALL::Composite
isPreviousSiblingOf(const Composite &composite) const BALL::Composite
isProtein() const BALL::Compositeinlinevirtual
isRelatedWith(const Composite &composite) const BALL::Composite
isResidue() const BALL::Compositeinlinevirtual
isRoot() const BALL::Composite
isRootOf(const Composite &composite) const BALL::Composite
isSelected() const BALL::Selectable
isSiblingOf(const Composite &composite) const BALL::Composite
isValid() const BALL::Bondvirtual
KernelPredicateType typedefBALL::Composite
MODIFICATION enum valueBALL::Composite
name_BALL::Bondprotected
NUMBER_OF_BOND_ORDERS enum valueBALL::Bond
NUMBER_OF_BOND_TYPES enum valueBALL::Bond
NUMBER_OF_PROPERTIES enum valueBALL::Bond
Object()BALL::Object
Object(const Object &object)BALL::Object
operator BitVector &()BALL::PropertyManager
operator delete(void *ptr)BALL::AutoDeletable
operator delete(void *ptr, void *)BALL::AutoDeletable
operator new(size_t size)BALL::AutoDeletable
operator new(size_t size, void *ptr)BALL::AutoDeletable
operator!=(const Bond &bond) const BALL::Bond
BALL::Composite::operator!=(const Composite &composite) const BALL::Composite
BALL::PersistentObject::operator!=(const Object &object) const BALL::Object
BALL::Selectable::operator!=(const Selectable &selectable) const BALL::Selectable
BALL::PropertyManager::operator!=(const PropertyManager &pm) const BALL::PropertyManager
operator<(const Object &object) const BALL::Object
operator<=(const Object &object) const BALL::Object
operator=(const Bond &bond)BALL::Bond
BALL::Composite::operator=(const Composite &composite)BALL::Composite
BALL::PersistentObject::operator=(const Object &)BALL::Object
BALL::Selectable::operator=(const Selectable &selectable)BALL::Selectable
BALL::PropertyManager::operator=(const PropertyManager &property_manager)BALL::PropertyManager
operator==(const Bond &bond) const BALL::Bond
BALL::Composite::operator==(const Composite &composite) const BALL::Composite
BALL::PersistentObject::operator==(const Object &object) const BALL::Object
BALL::Selectable::operator==(const Selectable &selectable) const BALL::Selectable
BALL::PropertyManager::operator==(const PropertyManager &pm) const BALL::PropertyManager
operator>(const Object &object) const BALL::Object
operator>=(const Object &object) const BALL::Object
operator>>(PersistenceManager &pm) const BALL::PersistentObject
Order typedefBALL::Bond
ORDER__ANY enum valueBALL::Bond
ORDER__AROMATIC enum valueBALL::Bond
ORDER__DOUBLE enum valueBALL::Bond
ORDER__QUADRUPLE enum valueBALL::Bond
ORDER__SINGLE enum valueBALL::Bond
ORDER__TRIPLE enum valueBALL::Bond
ORDER__UNKNOWN enum valueBALL::Bond
PersistentObject()BALL::PersistentObjectinline
persistentRead(PersistenceManager &pm)BALL::Bondvirtual
persistentWrite(PersistenceManager &pm, const char *name=0) const BALL::Bondvirtual
prependChild(Composite &composite)BALL::Composite
Property enum nameBALL::Bond
PropertyManager()BALL::PropertyManager
PropertyManager(const PropertyManager &property_manager)BALL::PropertyManager
rbeginChildComposite()BALL::Compositeinline
rbeginChildComposite() const BALL::Compositeinline
rbeginComposite()BALL::Compositeinline
rbeginComposite() const BALL::Compositeinline
BALL::read(PersistenceManager &pm)BALL::Selectable
BALL::PropertyManager::read(PersistenceManager &pm)BALL::PropertyManager
removeChild(Composite &child)BALL::Composite
removeSelected()BALL::Composite
removeUnselected()BALL::Composite
rendChildComposite()BALL::Compositeinline
rendChildComposite() const BALL::Compositeinline
rendComposite()BALL::Compositeinline
rendComposite() const BALL::Compositeinline
replace(Composite &composite)BALL::Composite
second_BALL::Bondprotected
select()BALL::Compositevirtual
Selectable()BALL::Selectable
Selectable(const Selectable &selectable, bool deep=true)BALL::Selectable
selected_BALL::Selectableprotected
SELECTION enum valueBALL::Composite
BALL::set(const Composite &composite, bool deep=true)BALL::Composite
BALL::Selectable::set(const Selectable &selectable, bool deep=true)BALL::Selectable
BALL::PropertyManager::set(const PropertyManager &property_manager)BALL::PropertyManager
setAutoDeletable(bool enable)BALL::AutoDeletable
setFirstAtom(Atom *atom)BALL::Bond
setName(const String &name)BALL::Bond
setOrder(Order bond_order)BALL::Bond
setProperty(Property property)BALL::PropertyManager
setProperty(const NamedProperty &property)BALL::PropertyManager
setProperty(const std::string &name)BALL::PropertyManager
setProperty(const std::string &name, bool value)BALL::PropertyManager
setProperty(const std::string &name, int value)BALL::PropertyManager
setProperty(const std::string &name, unsigned int value)BALL::PropertyManager
setProperty(const std::string &name, float value)BALL::PropertyManager
setProperty(const std::string &name, double value)BALL::PropertyManager
setProperty(const std::string &name, const std::string &value)BALL::PropertyManager
setProperty(const std::string &name, const PersistentObject &value)BALL::PropertyManager
setSecondAtom(Atom *atom)BALL::Bond
setSelected(bool selected)BALL::Selectableinlinevirtual
setType(Type bond_type)BALL::Bond
splice(Composite &composite)BALL::Composite
spliceAfter(Composite &composite)BALL::Composite
spliceBefore(Composite &composite)BALL::Composite
stamp(StampType stamp=BOTH)BALL::Composite
StampType enum nameBALL::Composite
swap(Bond &bond)BALL::Bond
BALL::Composite::swap(Composite &composite)BALL::Composite
BALL::Selectable::swap(Selectable &selectable)BALL::Selectable
BALL::PropertyManager::swap(PropertyManager &property_manager)BALL::PropertyManager
toggleProperty(Property property)BALL::PropertyManager
Type typedefBALL::Bond
TYPE__COVALENT enum valueBALL::Bond
TYPE__DISULPHIDE_BRIDGE enum valueBALL::Bond
TYPE__HYDROGEN enum valueBALL::Bond
TYPE__PEPTIDE enum valueBALL::Bond
TYPE__SALT_BRIDGE enum valueBALL::Bond
TYPE__UNKNOWN enum valueBALL::Bond
BALL::write(PersistenceManager &pm) const BALL::Selectable
BALL::PropertyManager::write(PersistenceManager &pm) const BALL::PropertyManager
~AutoDeletable()BALL::AutoDeletablevirtual
~Bond()BALL::Bondvirtual
~Composite()BALL::Compositevirtual
~Object()BALL::Objectvirtual
~PersistentObject()BALL::PersistentObjectinlinevirtual
~PropertyManager()BALL::PropertyManagervirtual
~Selectable()BALL::Selectablevirtual
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