Model Processors
[Visualisation]

Classes
class	VIEW::AtomBondModelBaseProcessor
	AtomBondModelBaseProcessor class. More...
class	VIEW::AddBackboneModel
	AddBackboneModel class. More...
class	VIEW::AddBallAndStickModel
	AddBallAndStickModel class. More...
class	VIEW::AddCartoonModel
	AddCartoonModel class. More...
class	VIEW::ColorProcessor
	Calculating colors for given GeometricObject instances. More...
class	VIEW::InterpolateColorProcessor
	Base class for ColorProcessors, that interpolate between two values. More...
class	VIEW::FieldLineCreator
	FieldLineCreator class. More...
class	VIEW::ForceModel
	ForceModel class. More...
class	VIEW::HBondModelProcessor
	HBondModelProcessor class. More...
class	VIEW::LabelModel
	LabelModel class. More...
class	VIEW::AddLineModel
	AddLineModel class. More...
class	VIEW::ModelProcessor
	Base class for all model processors. More...
class	VIEW::ElementColorProcessor
	ElementColorProcessor class. More...
class	VIEW::ResidueNumberColorProcessor
	ColorProcessor for coloring by the numbers of the Residue 's. More...
class	VIEW::ResidueNameColorProcessor
	ResidueNameColorProcessor is derived from the class ColorProcessor. More...
class	VIEW::AtomChargeColorProcessor
	AtomChargeColorProcessor class. More...
class	VIEW::AtomDistanceColorProcessor
	AtomDistanceColorProcessor class. More...
class	VIEW::CustomColorProcessor
	CustomColorProcessor colorizes every GeometricObject with the default color. More...
class	VIEW::TemperatureFactorColorProcessor
	Coloring by the temperature factor of atoms from a PDBFile. More...
class	VIEW::OccupancyColorProcessor
	Coloring by the occupancy of atoms from a PDBFile. More...
class	VIEW::ForceColorProcessor
	Coloring by the forces, acting on atoms. More...
class	VIEW::SecondaryStructureColorProcessor
	Coloring by the secondary structure, a Composite is in. More...
class	VIEW::ResidueTypeColorProcessor
	Coloring by the type of a Residue. More...
class	VIEW::AddSurfaceModel
	AddSurfaceModel class. More...
class	VIEW::AddVanDerWaalsModel
	AddVanDerWaalsModel class. More...

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Detailed Description

Molecular Models

There are several model types to visualise molecular structures in VIEW:

• Line
• Stick / BallandStick
• Surfaces
• Backbone
• Cartoon
• VanDerWaals
• ...

Every model is implemeted in a class derived from ModelProcessor, which operates on Kernel objects (Atoms , Bonds , ...).

If you want to add a new model, you have to do four things:

• Create a new derived ModelProcessor class
• Add a new entry in the enum VIEW::ModelType (see VIEW/KERNEL/common.h)
• Insert the name for the new model in getModelName() (see VIEW/KERNEL/common.h)
• Modify VIEW::DisplayProperties::createRepresentation_()
  In general ModelProcessor 's are members in Representations .

The new model will be automaticaly added to the DisplayProperties dialog.

Coloring Methods

There are also several methods to colorize the molecular models and every method is implemented in a class derived from ColorProcessor . Every instance of Representation can have a pointer to an object of ColorProcessor , which it calls to get the color for the GeometricObjects .