FeatureFinderAlgorithmMRM.h

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// Copyright (c) 2002-present, The OpenMS Team -- EKU Tuebingen, ETH Zurich, and FU Berlin
// SPDX-License-Identifier: BSD-3-Clause
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Andreas Bertsch $
// --------------------------------------------------------------------------
 
#pragma once
 
#include <OpenMS/FEATUREFINDER/FeatureFinderAlgorithm.h>
 
namespace OpenMS
{
  class InterpolationModel;
 
  class OPENMS_DLLAPI FeatureFinderAlgorithmMRM :
    public FeatureFinderAlgorithm,
    public FeatureFinderDefs
  {
public:
 
    typedef FeatureFinderAlgorithm::MapType MapType;
    typedef MapType::SpectrumType SpectrumType;
    typedef SpectrumType::FloatDataArrays FloatDataArrays;
 
    using FeatureFinderAlgorithm::param_;
    using FeatureFinderAlgorithm::features_;
    using FeatureFinderAlgorithm::defaults_;
    using FeatureFinderAlgorithm::map_;
 
public:
 
    enum
    {
      RT = Peak2D::RT,
      MZ = Peak2D::MZ
    };
 
    FeatureFinderAlgorithmMRM();
 
    void run() override;
 
    void run(PeakMap& input_map, FeatureMap& features, const Param& param, const FeatureMap& seeds);
    
protected:
 
    double fitRT_(std::vector<Peak1D>& rt_input_data, std::unique_ptr<InterpolationModel>& model) const;
 
    //Docu in base class
    void updateMembers_() override;
  };
 
} // namespace OpenMS