DigestionEnzymeDataProvider< EnzymeType > Class Template Reference

Abstract interface for providing digestion enzyme data. More...

#include <OpenMS/CHEMISTRY/DigestionEnzymeDataProvider.h>

Inheritance diagram for DigestionEnzymeDataProvider< EnzymeType >:

Public Member Functions
virtual	~DigestionEnzymeDataProvider ()=default
virtual std::vector< std::unique_ptr< EnzymeType > >	loadEnzymes ()=0
	Load enzyme definitions. Ownership is transferred to the caller.

Detailed Description

template<typename EnzymeType>
class OpenMS::DigestionEnzymeDataProvider< EnzymeType >

Abstract interface for providing digestion enzyme data.

Implementations of this interface supply enzyme definitions to DigestionEnzymeDB subclasses. This decouples data sourcing (file I/O, built-in definitions, etc.) from the database indexing logic.

Template parameter EnzymeType should be a subclass of DigestionEnzyme (e.g. DigestionEnzymeProtein, DigestionEnzymeRNA).

Constructor & Destructor Documentation

~DigestionEnzymeDataProvider()

template<typename EnzymeType >

virtual ~DigestionEnzymeDataProvider ( )

virtualdefault

Member Function Documentation

loadEnzymes()

template<typename EnzymeType >

virtual std::vector< std::unique_ptr< EnzymeType > > loadEnzymes ( )

pure virtual

Load enzyme definitions. Ownership is transferred to the caller.

Note

Providers may only support a single call. Callers should invoke loadEnzymes() exactly once per provider instance.

Implemented in BuiltInProteaseDataProvider, InMemoryDigestionEnzymeDataProvider< EnzymeType >, and EnzymeXMLDataProvider< EnzymeType >.