FLASHDeconvFeatureFile Class Reference

FLASHDeconv feature level output *.tsv, *.ms1ft (for Promex), *.feature (for TopPIC) file formats. More...

#include <OpenMS/FORMAT/FLASHDeconvFeatureFile.h>

Static Public Member Functions
static void	writeHeader (std::ostream &os, bool report_decoy=false)
	write header line for regular file output More...
static void	writeTopFDFeatureHeader (std::ostream &os, uint ms_level)
	write header line for topFD feature file More...
static void	writeFeatures (const std::vector< FLASHHelperClasses::MassFeature > &mass_features, const String &file_name, std::ostream &os, bool report_decoy=false)
	write the features in regular file output More...
static void	writeTopFDFeatures (std::vector< DeconvolvedSpectrum > &deconvolved_spectra, const std::vector< FLASHHelperClasses::MassFeature > &mass_features, const std::map< int, double > &scan_rt_map, const String &file_name, std::ostream &os, uint ms_level)
	Find mass features and write features in TopFD format files. More...

Detailed Description

FLASHDeconv feature level output *.tsv, *.ms1ft (for Promex), *.feature (for TopPIC) file formats.

Member Function Documentation

writeFeatures()

static void writeFeatures ( const std::vector< FLASHHelperClasses::MassFeature > &  mass_features, const String &  file_name, std::ostream &  os, bool  report_decoy = false  )

static

write the features in regular file output

Referenced by TOPPFLASHDeconv::main_().

writeHeader()

static void writeHeader ( std::ostream &  os, bool  report_decoy = false  )

static

write header line for regular file output

Referenced by TOPPFLASHDeconv::main_().

writeTopFDFeatureHeader()

static void writeTopFDFeatureHeader ( std::ostream &  os, uint  ms_level  )

static

write header line for topFD feature file

Referenced by TOPPFLASHDeconv::main_().

writeTopFDFeatures()

static void writeTopFDFeatures ( std::vector< DeconvolvedSpectrum > &  deconvolved_spectra, const std::vector< FLASHHelperClasses::MassFeature > &  mass_features, const std::map< int, double > &  scan_rt_map, const String &  file_name, std::ostream &  os, uint  ms_level  )

static

Find mass features and write features in TopFD format files.

Parameters

deconvolved_spectra	deconvolved spectra - feature indices are updated only for TopFD and TopPIC outputs
mass_features	mass features to be written
scan_rt_map	scan number to retention time map
file_name	input spectrum file name
os	output stream
ms_level	ms level

Referenced by TOPPFLASHDeconv::main_().