OpenMS
MapAlignmentEvaluationAlgorithm Class Referenceabstract

Base class for all Caap evaluation algorithms. More...

#include <OpenMS/ANALYSIS/MAPMATCHING/MapAlignmentEvaluationAlgorithm.h>

Inheritance diagram for MapAlignmentEvaluationAlgorithm:
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Public Member Functions

 MapAlignmentEvaluationAlgorithm ()
 Default constructor. More...
 
virtual ~MapAlignmentEvaluationAlgorithm ()
 Destructor. More...
 
virtual void evaluate (const ConsensusMap &conensus_map_in, const ConsensusMap &consensus_map_gt, const double &rt_dev, const double &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge, double &out)=0
 Applies the algorithm. The input consensus map is compared to the ground truth. More...
 
bool isSameHandle (const FeatureHandle &lhs, const FeatureHandle &rhs, const double &rt_dev, const double &mz_dev, const Peak2D::IntensityType &int_dev, const bool use_charge)
 Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity. More...
 

Protected Types

typedef ConsensusFeature::HandleSetType::const_iterator HandleIterator
 

Private Member Functions

 MapAlignmentEvaluationAlgorithm (const MapAlignmentEvaluationAlgorithm &)
 Copy constructor is not implemented -> private. More...
 
MapAlignmentEvaluationAlgorithmoperator= (const MapAlignmentEvaluationAlgorithm &)
 Assignment operator is not implemented -> private. More...
 

Detailed Description

Base class for all Caap evaluation algorithms.

These algorithms evaluates alignment results against a ground truth.

Member Typedef Documentation

◆ HandleIterator

typedef ConsensusFeature::HandleSetType::const_iterator HandleIterator
protected

Constructor & Destructor Documentation

◆ MapAlignmentEvaluationAlgorithm() [1/2]

Default constructor.

◆ ~MapAlignmentEvaluationAlgorithm()

virtual ~MapAlignmentEvaluationAlgorithm ( )
virtual

Destructor.

◆ MapAlignmentEvaluationAlgorithm() [2/2]

Copy constructor is not implemented -> private.

Member Function Documentation

◆ evaluate()

virtual void evaluate ( const ConsensusMap conensus_map_in,
const ConsensusMap consensus_map_gt,
const double &  rt_dev,
const double &  mz_dev,
const Peak2D::IntensityType int_dev,
const bool  use_charge,
double &  out 
)
pure virtual

Applies the algorithm. The input consensus map is compared to the ground truth.

Implemented in MapAlignmentEvaluationAlgorithmRecall, and MapAlignmentEvaluationAlgorithmPrecision.

◆ isSameHandle()

bool isSameHandle ( const FeatureHandle lhs,
const FeatureHandle rhs,
const double &  rt_dev,
const double &  mz_dev,
const Peak2D::IntensityType int_dev,
const bool  use_charge 
)

Decides if two features are the same, based on maximum allowed deviations for retention time, m/z and intensity.

◆ operator=()

Assignment operator is not implemented -> private.