ProteinIdentificationVisualizer Class Reference

Class that displays all meta information for ProteinIdentification objects. More...

#include <OpenMS/VISUAL/VISUALIZER/ProteinIdentificationVisualizer.h>

Inheritance diagram for ProteinIdentificationVisualizer:

Collaboration diagram for ProteinIdentificationVisualizer:

Public Slots
void	store () override
Public Slots inherited from BaseVisualizerGUI
virtual void	store ()=0
	Saves the changes made in the GUI to the object.

Public Member Functions
	ProteinIdentificationVisualizer (bool editable=false, QWidget *parent=0, MetaDataBrowser *caller=nullptr)
	Constructor.
void	load (ProteinIdentification &s, int tree_item_id)
	Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.
Public Member Functions inherited from BaseVisualizerGUI
	BaseVisualizerGUI (bool editable=false, QWidget *parent=nullptr)
	Constructor.
bool	isEditable () const
	Returns if the values are editable.
Public Member Functions inherited from BaseVisualizer< ProteinIdentification >
void	load (ProteinIdentification &o)
	Loads the object that is to be edited.
virtual	~BaseVisualizer ()

Protected Slots
void	updateTree_ ()
	Updates the tree by calling MetaDataBrowser::updateProteinHits()
void	undo_ ()
	Undo the changes made in the GUI.

Protected Attributes
MetaDataBrowser *	pidv_caller_
	Pointer to MetaDataBrowser.
int	tree_id_
	The id of the item in the tree.
Edit fields and buttons
QLineEdit *	engine_
QLineEdit *	engine_version_
QLineEdit *	identification_date_
QLineEdit *	identification_threshold_
QLineEdit *	identifier_
QLineEdit *	score_type_
QComboBox *	higher_better_
QLineEdit *	db_
QLineEdit *	db_version_
QLineEdit *	taxonomy_
QLineEdit *	charges_
QLineEdit *	missed_cleavages_
QLineEdit *	peak_tolerance_
QLineEdit *	precursor_tolerance_
QComboBox *	mass_type_
QLineEdit *	enzyme_
QLineEdit *	filter_threshold_
	Threshold for filtering by score.
Protected Attributes inherited from BaseVisualizerGUI
QPushButton *	undo_button_
	Undo button.
QGridLayout *	mainlayout_
	The main layout.
UInt	row_
	Counter for the current grid row.
bool	editable_
	Edit flag.
Protected Attributes inherited from BaseVisualizer< ProteinIdentification >
ProteinIdentification *	ptr_
	Pointer to the object that is currently edited.
ProteinIdentification	temp_
	Copy of current object used to restore the original values.

Additional Inherited Members
Signals inherited from BaseVisualizerGUI
void	sendStatus (std::string status)
	Sends a status message, if date is not in proper format.
Protected Member Functions inherited from BaseVisualizerGUI
void	addLabel_ (const QString &label)
	Adds a label to the grid layout.
void	addLabel_ (const QString &label, UInt row)
	Adds a label to a certain row.
void	addLineEdit_ (QLineEdit *&ptr, QString label)
	Adds a line edit field with label to the grid layout.
void	addIntLineEdit_ (QLineEdit *&ptr, QString label)
	Adds a line edit field to the grid layout including a int validator.
void	addDoubleLineEdit_ (QLineEdit *&ptr, QString label)
	Adds a line edit field to the grid layout including a double validator.
void	addLineEditButton_ (const QString &label, QLineEdit *&ptr1, QPushButton *&ptr2, const QString &buttonlabel)
	Adds a line edit field with label and button to the next free position in the grid.
void	addListView_ (QListWidget *&ptr, QString label)
	Adds a list edit field to the grid layout.
void	addTextEdit_ (QTextEdit *&ptr, QString label)
	Adds a text edit field to the grid layout.
void	addComboBox_ (QComboBox *&ptr, QString label)
	Adds a drop-down field to the grid layout.
void	addBooleanComboBox_ (QComboBox *&ptr, QString label)
	Adds a boolean drop-down field to the grid layout ( 'true'=1, 'false'=0 ).
void	fillComboBox_ (QComboBox *&ptr, const std::string *items, int item_count)
	Fills a combo box with string items (the number of strings is determined by item_count).
void	addVSpacer_ ()
	Adds vertical spacer.
void	addButton_ (QPushButton *&ptr, const QString &label)
	Adds a button to the next free position in the grid.
void	add2Buttons_ (QPushButton *&ptr1, const QString &label1, QPushButton *&ptr2, const QString &label2)
	Adds two buttons in a row.
void	addSeparator_ ()
	Adds a horizontal line as a separator.
void	finishAdding_ ()
	Adds buttons common to all visualizers.
Protected Member Functions inherited from BaseVisualizer< ProteinIdentification >
virtual void	update_ ()
	Updates the GUI from the temp_ variable.

Detailed Description

Class that displays all meta information for ProteinIdentification objects.

This class provides all functionality to view the meta information of an object of type Identification.

Constructor & Destructor Documentation

ProteinIdentificationVisualizer()

ProteinIdentificationVisualizer	(	bool	editable = false,
		QWidget *	parent = 0,
		MetaDataBrowser *	caller = nullptr
	)

Constructor.

Member Function Documentation

load()

void load	(	ProteinIdentification &	s,
		int	tree_item_id
	)

Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.

store

void store ( )

overrideslot

undo_

void undo_ ( )

protectedslot

Undo the changes made in the GUI.

updateTree_

void updateTree_ ( )

protectedslot

Updates the tree by calling MetaDataBrowser::updateProteinHits()

Calls MetaDataBrowser::updateProteinHits().
Updates the tree depending of the protein significance threshold.
Only ProteinHits with a score superior or equal to the current threshold will be displayed.

Member Data Documentation

charges_

QLineEdit* charges_

protected

db_

QLineEdit* db_

protected

db_version_

QLineEdit* db_version_

protected

engine_

QLineEdit* engine_

protected

engine_version_

QLineEdit* engine_version_

protected

enzyme_

QLineEdit* enzyme_

protected

filter_threshold_

QLineEdit* filter_threshold_

protected

Threshold for filtering by score.

higher_better_

QComboBox* higher_better_

protected

identification_date_

QLineEdit* identification_date_

protected

identification_threshold_

QLineEdit* identification_threshold_

protected

identifier_

QLineEdit* identifier_

protected

mass_type_

QComboBox* mass_type_

protected

missed_cleavages_

QLineEdit* missed_cleavages_

protected

peak_tolerance_

QLineEdit* peak_tolerance_

protected

pidv_caller_

MetaDataBrowser* pidv_caller_

protected

Pointer to MetaDataBrowser.

precursor_tolerance_

QLineEdit* precursor_tolerance_

protected

score_type_

QLineEdit* score_type_

protected

taxonomy_

QLineEdit* taxonomy_

protected

tree_id_

int tree_id_

protected

The id of the item in the tree.